rna7428, rna7428 (mRNA) Nannochloropsis gaditana

Overview
Namerna7428
Unique Namerna7428
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length798
Alignment locationCM002471.1:564901..565883 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102237g1.8318.mrna
Orig protein idgnl|cribi|Naga_102237g1.8318
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:564901..565883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102237g1gene7187Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7428rna7428-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23263.1cds7410Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7428 ID=rna7428|Name=rna7428|organism=Nannochloropsis gaditana|type=mRNA|length=798bp
CTGCGTGCCACGATCCAGTGCTTGCGTTCCTCTGACGGCTTTCTCCTTTC
CTTCCTTCCCCTCCCTCCCTCCCTCCCTCCCCCCCCTCCCTCCCCCCTCT
CTCTAGCCCCTCTTCCCCTTGCGCGATGCGGCGACCAAGACCATCGTCAC
GTCGGGGGCCGAGCTGGCAGAGGAAGCGAGGAGGAGGAAGGGGTAGAGGG
AAGGAGGGATGGGGGTTGGAGGGAAGGAGGGAGGGAGGGAGGGAGGGAGG
GGGACGCCCTCACCCTTTTTCTCTTGGTGACCTCGGGGGGAAGGTTTTTC
CTTTCTGATTTTGCATTAGGATACAGCGTAGCAGCTTCTTACATACATGC
GCATACATAGCGAAGAGGTGGTGGGTGGTGTCGATTGTGGCTTACAAAGT
TCAGGGTGATAACGACGCGAGATGTTCCTGCCCGTGGGACCCTCGCCTCC
TCCGGGTAGCTTTCCCCAGTCCCCTGGCTTGTGGGCGGGGCTCGACGGCG
TCGAGGATGGCGTCGGCCCGATCCCTGGCTTCGATTGCTCGCTTCGATTG
CTCGGTGCGCCATGTAGGACCGGGTGGTGGTGAGGGAGAGAGATCTCCTT
GATTCCTGGGCGGCACCGGACATGGAGAGCAAGAGCGAGGCAGCGATGGG
ATGGGAGGGCAATGACGGGGGGACGGGTTTGGGTACCTAAACCATCACAG
AGAGAAAGAAATAGCGAGGCAGCGATCGGGGGAAGGACGGACTCTTCGTG
TTTTCTTCCGTGACGCCACCTCATCCCTTCATCTCTGACATGGCCTCA
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protein sequence of rna7428

>rna7428-protein ID=rna7428-protein|Name=rna7428|organism=Nannochloropsis gaditana|type=polypeptide|length=198bp
GRYPAPTLPGRQHLAPLPPSLQSWRYTQTRVPGTSSALTWSTAMLPAGEW
LYLVGVAGKGIDATQVPSLPPSLPSFLPFLLTPFSPLGFHRCWPAFRSPP
SSLPPPFPPPLPPPLPPPRPPPRPPLTPSTPRPWKSGYIPLLPPPLPPPL
PLPHPPAGSRSRPTWPQALPPLLPLLPSLPTSSPPSFHRVPWESPRLA
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mRNA from alignment at CM002471.1:564901..565883+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7428 ID=rna7428|Name=rna7428|organism=Nannochloropsis gaditana|type=mRNA|length=983bp|location=Sequence derived from alignment at CM002471.1:564901..565883+ (Nannochloropsis gaditana)
GGACGTTACCCAGCTCCAACCTTACCGGGAAGGCAACAtcttgctcccct
ccctccctccctccagtcctGGCGCTACACCCAAACCCGCGTCCCGGGCA
CCTCCTCTGCTCTCACCTGGTCTACGGCTATGCTCCCTGCGGGGGAATGG
CTCTACCTCGTTGGAGTAGCGGGCAAAGGCATCGACGCCACCCAggttcc
ttccctccctccctccctcccttccttccttcctttcctgctcaccccct
tttcccccctcggtTTCCATAGGTGCTGGCCCGCCttccgctctcctccc
tcctcccttcctcctccctttcctcctccccttcctcctccccttcctcc
tccccgtcctcctccccgtcctccccttacGCCTTCAACGCCTCGTCCAT
GGAAGTCTGGGTacattcccctccttcctcccccccttcctcctcccctc
cctctcccccaccctcccgctGGATCCCGCTCCAGACCTACCTGGCcgca
agccctccctcctcttctccctctcctcccctccctccctacgtcctcac
ccccctctttccaccgGGTACCCTGGGAGTCACCGAGGCTGGCTTGATCT
TCCACGAGCGCCTGAATCGCTACTTGATGGTCACCCTCCCGGCTTTCGCC
AACAAggtgtcttcctccctttcctccctccctcccttcctccctccctc
ccttcctccctccctccctcccttcctcccttcctcctgcccatgtggcc
ttccctctcacccacTGGTCTCCACGCTCTAATGGTCACCCCACCATGTC
cggccctcgcctccctccctccctccctccctccctccctccctccctcc
ctccctcccgcggtAGCTCTACATGTGGACGAGCCCCTCTCTGACAGGGC
CTTGGGTGGCGACAGAGCTattggacgtggaggagttTGAGAAAGAATTT
CAGACGTTGAAGGTTCGGACGAGGGTctggcgg
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Coding sequence (CDS) from alignment at CM002471.1:564901..565883+

>rna7428 ID=rna7428|Name=rna7428|organism=Nannochloropsis gaditana|type=CDS|length=597bp|location=Sequence derived from alignment at CM002471.1:564901..565883+ (Nannochloropsis gaditana)
GGACGTTACCCAGCTCCAACCTTACCGGGAAGGCAACAtcttgctcccct
ccctccctccctccagtcctGGCGCTACACCCAAACCCGCGTCCCGGGCA
CCTCCTCTGCTCTCACCTGGTCTACGGCTATGCTCCCTGCGGGGGAATGG
CTCTACCTCGTTGGAGTAGCGGGCAAAGGCATCGACGCCACCCAggttcc
ttccctccctccctccctcccttccttccttcctttcctgctcaccccct
tttcccccctcggtTTCCATAGGTGCTGGCCCGCCttccgctctcctccc
tcctcccttcctcctccctttcctcctccccttcctcctccccttcctcc
tccccgtcctcctccccgtcctccccttacGCCTTCAACGCCTCGTCCAT
GGAAGTCTGGGTacattcccctccttcctcccccccttcctcctcccctc
cctctcccccaccctcccgctGGATCCCGCTCCAGACCTACCTGGCcgca
agccctccctcctcttctccctctcctcccctccctccctacgtcctcac
ccccctctttccaccgGGTACCCTGGGAGTCACCGAGGCTGGCTTGA
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Synonyms
Publications