rna7427, rna7427 (mRNA) Nannochloropsis gaditana

Overview
Namerna7427
Unique Namerna7427
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length264
Alignment locationCM002471.1:560972..561769 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101163g2.4588.mrna
Orig protein idgnl|cribi|Naga_101163g2.4588
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:560972..561769 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101163g2gene7186Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7427rna7427-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23264.1cds7409Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7427 ID=rna7427|Name=rna7427|organism=Nannochloropsis gaditana|type=mRNA|length=264bp
ATGCTGGGGCGTGTGCACGGAGGGCCGCATTCCAGTCCACACCAATACAG
GTTGATTGGACAGGACTCACTCCGGTCGATGCTTCCCGAGACCATGCAGG
CGCATGCCGACGATGATGCCCGTCTAGATTCCGGAGCAAATCCATCTATC
ATGGTGGTCCCCCGCCTGCATTTACGACTGAAAACACCCACTCCAGACGC
GCATTCTGGGAGCATGCACCGCACCAGACATGGCTCACTGACACGACGTT
GCTGCGCTTCTTGA
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protein sequence of rna7427

>rna7427-protein ID=rna7427-protein|Name=rna7427|organism=Nannochloropsis gaditana|type=polypeptide|length=119bp
LRATIQCLRSSDGFLLSFLPLPPSLPPPPPSPLSLAPLPLARCGDQDHRH
VGGRAGRGSEEEEGVEGRRDGGWREGGREGGREGDALTLFLLVTSGGRFF
LSDFALGYSVAASYIHAHT
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mRNA from alignment at CM002471.1:560972..561769+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7427 ID=rna7427|Name=rna7427|organism=Nannochloropsis gaditana|type=mRNA|length=798bp|location=Sequence derived from alignment at CM002471.1:560972..561769+ (Nannochloropsis gaditana)
CTGCGTGCCACGATCCAGTGCTTGCGTTCCTCTGAcggctttctcctttc
cttccttcccctccctccctccctccctcccccccctccctcccccctct
ctctagcccctcttccccttgcgcGATGCGGCGACCAAGACCATCGTCAC
GTCGGGGGCCGAGCtggcagaggaagcgaggaggaggaaggggtagaggg
aaggagggatgggggttggagggaaggagggagggagggagggagggagg
gggacgccCTCACCCTTTTTCTCTTGGTGACCTCGGGGGGAAGGTTTTTC
CTTTCTGATTTTGCATTAGGATACAGCGTAGCAGCTTCTTACATACATGC
GCATACATAGCGAAGAGGTGGTGGGTGGTGTCGATTGTGGCTTACAAAGT
TCAGGGTGATAACGACGCGAGATGTTCCTGCCCGTGggaccctcgcctcc
tccgggtagctttccCCAGTCCCCTGGCTTGTGGGCGGGGCTCGACGGCG
TCGAGGATGGCGTCGGCCCGATCCCTGGCTTCGATTGCTCGCTTCGATTG
CTCGGTGCGCCATGTAGGaccgggtggtggtgagggagagagatcTCCTT
GATTCCTGGGCGGCACCGGACATGGAGAGCAAGAGCGAGGCAGCgatggg
atgggagggcAATGACGGGGGGACGGGTTTGGGTACCTAAACCATCACAG
AGAGAAAGAAATAGCGAGGCAGCGAtcgggggaaggacggactCTTCGTG
TTTTCTTCCGTGACGCCACCTCATCCCTTCATCTCTGACATGGCCTCA
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Coding sequence (CDS) from alignment at CM002471.1:560972..561769+

>rna7427 ID=rna7427|Name=rna7427|organism=Nannochloropsis gaditana|type=CDS|length=360bp|location=Sequence derived from alignment at CM002471.1:560972..561769+ (Nannochloropsis gaditana)
CTGCGTGCCACGATCCAGTGCTTGCGTTCCTCTGAcggctttctcctttc
cttccttcccctccctccctccctccctcccccccctccctcccccctct
ctctagcccctcttccccttgcgcGATGCGGCGACCAAGACCATCGTCAC
GTCGGGGGCCGAGCtggcagaggaagcgaggaggaggaaggggtagaggg
aaggagggatgggggttggagggaaggagggagggagggagggagggagg
gggacgccCTCACCCTTTTTCTCTTGGTGACCTCGGGGGGAAGGTTTTTC
CTTTCTGATTTTGCATTAGGATACAGCGTAGCAGCTTCTTACATACATGC
GCATACATAG
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Synonyms
Publications