rna7421, rna7421 (mRNA) Nannochloropsis gaditana

Overview
Namerna7421
Unique Namerna7421
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length357
Alignment locationCM002471.1:552000..552724 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100829g1.9008.mrna
Orig protein idgnl|cribi|Naga_100829g1.9008
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:552000..552724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100829g1gene7180Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7421rna7421-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23268.1cds7404Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7421 ID=rna7421|Name=rna7421|organism=Nannochloropsis gaditana|type=mRNA|length=357bp
ATGACGCTAACGGGCCTTTTCTCTCTCCCTCCTTCCTTCCCTCCCTCTCT
CCCTCCCTTCCTCTCGCCACAGCACATCGCCCACCTGCCCCCACAAGTTT
CCCATGCACGCGGGCTACGTGGACGCGGACGGCATCGCGTCATGGGTGAA
CACCAAGGCGGAAGTGAACATCAACATCTACAAATCGCCCTGGCCCGTCA
TTCTCTTCTCCCTCTTTTTCCTCCTCCTTATGGCCCTGGTCGCGCGGCCC
CTCCTCTCCTTCCTCCCAACTCTCCTCGTTTGGGCGCGCAACACCTACCT
CTGGATGTTTGTTTGCGCAGCTTTTTACATTTGTTCGATCAGCGGGCTGG
TTTTTGA
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protein sequence of rna7421

>rna7421-protein ID=rna7421-protein|Name=rna7421|organism=Nannochloropsis gaditana|type=polypeptide|length=107bp
MAMPRRISLLFLPSFQPLSDEEPVVYANLSVEMEGLSSEQILLCESKEVE
KTKCKSLRCCLFFLGIFFPLLGQVGSPYPHFARLRYVCCERHIGRGVSTQ
QVESSED
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mRNA from alignment at CM002471.1:552000..552724+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7421 ID=rna7421|Name=rna7421|organism=Nannochloropsis gaditana|type=mRNA|length=725bp|location=Sequence derived from alignment at CM002471.1:552000..552724+ (Nannochloropsis gaditana)
cccttgccccctccctcctttcttttccctgtCCTTGTCCGACGAACCCC
CTTTgcatttcctccgtcctctgtCATTCGTTTGCGTtcagccttccttc
tcatctcGTTTCTCCCTTTGCTCCCTacctcgcccctcttcttcccttct
cgtcttcctcagCCATCATCCTCGCTGAGCTCTCTTACTCCACTTCCAAA
CTCAAGACATCTCAGTGGAGGAAAACACTTGCATGGCTATGCCTCGTCGc
atttcccttctttttctacCAAGTTTTCAGCCTCTATCGGATGAAGAACC
AGTGGTATATGCGAATTTGAGCGTAGAAATGGAAGGGCTGTCTTCGGAGC
AGATACTTTTGTGCGAGTCGAAGGAAGTAGAAAAAACAAAATGCAAAAGT
TTAAGGTGTTGCTTGTTTTTTCTtgggatttttttccccctgttAGGTCA
AGTCGGTAGTCCTTATCCGCACTTTGCTCGGTTGCGATATGTGTGCTGCG
AACGGCACATTGGACGCGGTGTAAGTACTCAGCAAGTCGAGAGCTCAGAG
GATTGACAATCGTCTTTTGCGTAATCAAAGGGGAAATACTCAATCTTGCA
CAAATAAATCTGCCACGACGCCTGAAGAAAGCAGAGCGGGCATGAAGGGC
CCTCGACAAAAAGAAATGTGGATGCTGAGCGCATAATTAGATGTTTAAAT
CTTCCTCTTGTTCTTTGTTTATACT
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Coding sequence (CDS) from alignment at CM002471.1:552000..552724+

>rna7421 ID=rna7421|Name=rna7421|organism=Nannochloropsis gaditana|type=CDS|length=324bp|location=Sequence derived from alignment at CM002471.1:552000..552724+ (Nannochloropsis gaditana)
ATGGCTATGCCTCGTCGcatttcccttctttttctacCAAGTTTTCAGCC
TCTATCGGATGAAGAACCAGTGGTATATGCGAATTTGAGCGTAGAAATGG
AAGGGCTGTCTTCGGAGCAGATACTTTTGTGCGAGTCGAAGGAAGTAGAA
AAAACAAAATGCAAAAGTTTAAGGTGTTGCTTGTTTTTTCTtgggatttt
tttccccctgttAGGTCAAGTCGGTAGTCCTTATCCGCACTTTGCTCGGT
TGCGATATGTGTGCTGCGAACGGCACATTGGACGCGGTGTAAGTACTCAG
CAAGTCGAGAGCTCAGAGGATTGA
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Synonyms
Publications