rna742, rna742 (mRNA) Nannochloropsis gaditana

Overview
Namerna742
Unique Namerna742
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1440
Alignment locationCM002456.1:305140..306416 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100661g1.3411.mrna
Orig protein idgnl|cribi|Naga_100661g1.3411
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:305140..306416 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100661g1gene711Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna742rna742-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29930.1cds742Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna742 ID=rna742|Name=rna742|organism=Nannochloropsis gaditana|type=mRNA|length=1440bp
ATGAGCTCTTGTCGTGCCCTTTTTGTTGCCACGCAGCTCCTTACTACCAC
CAGTACGCTTGCATTTCGTCCAGCACTCTTTGCTCCTGTCATTTCGCGTC
CCCGTGTCAGCATCAACGGTTTCAGAACTTGCAAGACCCTCACAATGGCC
ACAAAAGCTCCTGCAAAGGAACCTACCAAGTGGACGACAAAGGATTACAG
GCGCCCCCTGCATTGGGTCTTCAAAGTAGGCGACCTGGCCAAGACCCTGG
CTTTTTACGAGGAAGGTTTCGGCATGCACGTGCACCGTCACGAGGAGTTT
GCCTCGGGGTGTGAGGCCACCTGCAACGGCCCCTACGGCGGGTGTTGGAG
CAAAACCATGGTCGGCTGGGGTAAGGAGGACGAGCAATTCGCCCTGGAAT
TGACCTGCAACTACGGCATCGACTCGTACAAGGCAGGAAACGATTTCCGT
CACATTGCTGTGGACGCCAAGGCCTGGCGGGGTCCTGCGTCGCAGGTAAA
GGTGGAGGACGGGAGGCGTTATGTAAAGTCCCCGGACGGCTACAGCTACC
TTCTGGTCGACACGGGCAGCGCCAGCGTACCGTCGGAACCCTTCCTTTTC
GTCTCCATCCACGTCGCGGACGTGCCACGCAGCCAGCAGTACTACGTGGA
CGTGTTGGGGGCCACGGTCCGCCCCGGGGGCCCGGGAGCCGAGACCGGGG
CGCAGAGTGTGATGGTGGGCTTCGACCAGGCGGGTACCGGTGTGTGCTTG
GAACTCGTCCAGCTCCCAGGCGGCGGGCAGGTGGACCACGCCCTGGCGTC
GGGACGCTTTGCCACCGAAACCGAGGACGGTGCTCCCGACAAGGTGGGGG
CGCGGGTCCAGGAGGCAGGGGGGGACGTGCTGCATGGCCCCTTGAAATTG
CAACCGCACGGGGAGGAAGTGGTGATCGTCGCGGACCCAGACGGGTACGA
ATTCTGTTTTGTGGACGCACGGGGCTATACCAATTGCATCAATGTCCGCG
ATTCGGCGGAGGGCACGACAGTGGACTGGCCCTACCGGGAGCGCTTGGAG
AAAGCTGCCCGGAGTAAGGAGAACCCGAAGCTGGAGGTGGCCAAGGTCTT
GGCGGGGGACTATGATGTGAAGCGAATCTGTGGCATGCTGGACGGGTGGG
TGGAGCGTCACCCGGTGGTTGTCTTTGCGCAGGTGACGTGTCCGTTTTGC
AAGAAGGCGAAGGAGCTTCTGAGCGAAGTAGGGGCCAAGTATGAGGTAGT
GGAGGTGGATGCGATGGAGGGGAAGGACGGCTTCGCCATACGCGTGGAGC
TGGACAAGGTCACGGGGAGAAGCACGGTCCCAAACATTTTCATTGGAGGC
AAGCCCGTGGGCGGTTTCTCCGACGGCGTGGAGGAGTTGCACAAAAATGG
GAAGCTGGTCCCCTTACTCAAGGAAGCAGGAGCTCTTTAA
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protein sequence of rna742

>rna742-protein ID=rna742-protein|Name=rna742|organism=Nannochloropsis gaditana|type=polypeptide|length=237bp
MDSVGAAAAAAINDKKASMPEEEEGKRLGRTILDMLRQPSAHASLAASVA
SSSCTLQPPLVPSGSEEAGREDKGAGGVRWETRSLPEIEEQARSRWAAVA
LALEEGSILLEDGSRVPVIRLPLGEDSPSTPCPSPPIACRSAPSIGLVDA
REVFTTSSSEEEGREGSWVESVQRWRRGGTFFGRDRQDGCRGGRGGKKRG
GRGWKGGRWKEEGKGQSEEGKGRDRQGNGTQSIACRA
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mRNA from alignment at CM002456.1:305140..306416+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna742 ID=rna742|Name=rna742|organism=Nannochloropsis gaditana|type=mRNA|length=1277bp|location=Sequence derived from alignment at CM002456.1:305140..306416+ (Nannochloropsis gaditana)
atggacaGCGTGGGGGCGGCCGCAGCGGCAGCCATAAATGACAAGAAAGC
TTCCAtgccagaagaggaggaagggaagcgcTTGGGTCGCACCATCCTCG
ACATGCTCCGACAGCCCTCTGCCCATGcttccctcgctgcctccgtcgct
tcctcctcctgcacgctcCAGCCACCTTTGGTCCCTTCAGGCtccgagga
agcggggagggaggacaagggggcgggcggtgtCCGATGGGAgacccgct
ccctccccgagaTCGAAGAGCAGGCCCGGTCTAGATGGGCCGCCGTCGCT
CTcgccctggaagagggatcCATACTGCTGGAGGACGGCAGCAGGGTTCC
TGTCATCCGCTTGCCCCTTGGCGAGGATAGTCCCTCGactccctgtcctt
ctcctcccattgCGTGTCGGTCGGCTCCGTCAATTGGGTTAGTAGATGCG
AGGGAGGTATTTACGACTTCCTcaagtgaggaggagggaagggagggaag
ttgGGTGGAGAGTGTGCAGAGATGGAGACGCGGCGGTACCTTCTTCGGTC
GAGATAGGCAGGACggatgcagaggagggagggggggaaaaaaacgagga
gggcgaggatggaaaggaggacgatggaaggaagaggggaaagggcagtc
agaagagggaaaaggaagagacagacaGGGCAATGGAACCCAGAGCATTG
CGTGTCGGGCGTAGTAAGGTCTCGACGTGATGGTCGGTGAAAGGGGTGAG
GGACGGTATGGTGCgacaagggcgaggaggagcaagcggTGGTTATGTGA
CCTTCTGCATACTGCCGCGCTACGGCCACAAGAATGTGGGCGCAGGAATA
CATATCATGGGTCTGCTCGTATACGACCGGCTGGTTGGAAGACACACACA
GGTGTGATGACTTTCTGGGGGAACTTATTGATACGATGAGAAGGTCTTGC
CAGCCGAGGCCACAGAAGTATCAAGGGGAGCAGATTTCCTATGGGGGTTA
CACATGCATGTTAGGCTAACACAAAGCAATAAAGGAGCAAAGGGAGAGTA
ACAAAAGCAGAACACAACGaatggagaggggaggtatATTTGTGTATCAG
TGCTTAGGGAGGACCGTATAAAACGCATTCGTTGCGGTGACCGCCCATCA
CTTATGTTGATAGAGAATAAAGCACAGTCCAAAGTCAAGCACAATTTAAA
GTCAAGCAATCGTTATAAGAAAAATCCTCTGTAGATGGCATATCGAAAGA
AAATCCTTTCTGGTGTATCAGGCAAAC
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Coding sequence (CDS) from alignment at CM002456.1:305140..306416+

>rna742 ID=rna742|Name=rna742|organism=Nannochloropsis gaditana|type=CDS|length=714bp|location=Sequence derived from alignment at CM002456.1:305140..306416+ (Nannochloropsis gaditana)
atggacaGCGTGGGGGCGGCCGCAGCGGCAGCCATAAATGACAAGAAAGC
TTCCAtgccagaagaggaggaagggaagcgcTTGGGTCGCACCATCCTCG
ACATGCTCCGACAGCCCTCTGCCCATGcttccctcgctgcctccgtcgct
tcctcctcctgcacgctcCAGCCACCTTTGGTCCCTTCAGGCtccgagga
agcggggagggaggacaagggggcgggcggtgtCCGATGGGAgacccgct
ccctccccgagaTCGAAGAGCAGGCCCGGTCTAGATGGGCCGCCGTCGCT
CTcgccctggaagagggatcCATACTGCTGGAGGACGGCAGCAGGGTTCC
TGTCATCCGCTTGCCCCTTGGCGAGGATAGTCCCTCGactccctgtcctt
ctcctcccattgCGTGTCGGTCGGCTCCGTCAATTGGGTTAGTAGATGCG
AGGGAGGTATTTACGACTTCCTcaagtgaggaggagggaagggagggaag
ttgGGTGGAGAGTGTGCAGAGATGGAGACGCGGCGGTACCTTCTTCGGTC
GAGATAGGCAGGACggatgcagaggagggagggggggaaaaaaacgagga
gggcgaggatggaaaggaggacgatggaaggaagaggggaaagggcagtc
agaagagggaaaaggaagagacagacaGGGCAATGGAACCCAGAGCATTG
CGTGTCGGGCGTAG
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Synonyms
Publications