rna7419, rna7419 (mRNA) Nannochloropsis gaditana

Overview
Namerna7419
Unique Namerna7419
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length362
Alignment locationCM002471.1:550194..551027 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101654g2.177.mrna
Orig protein idgnl|cribi|Naga_101654g2.177
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:550194..551027 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101654g2gene7178Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7419rna7419-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23272.1cds7402Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7419 ID=rna7419|Name=rna7419|organism=Nannochloropsis gaditana|type=mRNA|length=362bp
CCCCACCCTCCCTCCCTCTTCACCTTCGCTGACTCTCCCTCCTTCCCCCC
CCCTTCCCGCCTCCCCTCCCCAGGTCACGGTCCCTCGGCCTCAGCACCGC
CCCACCCTCTATCCCTGGGCGGGTTTCGTCTTCGGCTGGCTGTGTCTGGC
GGTGACGTTGGGCTACCTCATCGTCCTGCTTGGTCCCGGCGCCAAGGCCC
TTCGGGAGGCGGCAAGCCGGTTTCGAAGAGGAGTGGGAAGGGAGGGTGCG
GTCAAAGTGGAGACGGAAGCCTTGCTTCAGCACCGACAGCGGTAAATTCC
AAGGCACAGAATGCAATAAGTAATATGTAGTATGTAATAAGTAATGTACG
CTTGGATGTCAT
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protein sequence of rna7419

>rna7419-protein ID=rna7419-protein|Name=rna7419|organism=Nannochloropsis gaditana|type=polypeptide|length=110bp
MFSLSVRRALRPYSVKMQPLRVLQLVVWLATTVVMAGAAGTTKNKTPERK
TAQLAALHKRTASHGVIHMTDDLYPHGPQVPVSAVPGHRAGIRYMRRQLL
PPLPGCILQL
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mRNA from alignment at CM002471.1:550194..551027+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7419 ID=rna7419|Name=rna7419|organism=Nannochloropsis gaditana|type=mRNA|length=834bp|location=Sequence derived from alignment at CM002471.1:550194..551027+ (Nannochloropsis gaditana)
ATGTTCTCTTTGTCCGTACGACGGGCTTTAAGGCCCTACAGCGTGAAGAT
GCAGCCACTACGAGTGCTTCAGCTGGTGGTTTGGCTCGCTACGACTGTGG
TCATGGCAGGAGCTGCAGGCACGACGAAAAACAAGGTACATTAATTAGAT
GAGAAGCAACAGAAAATATCGACGTTCCAGGCGGCGTGACCGGAGAAGGC
AATGAGGCCGTGCTCTGCCGCCGTCATCCATGACATTCAATTTATGTGGA
CAGAGGTTGGTTTCACTTGCGGCATGTACCTCTATGACGACCGAGatcct
ttctctgcctcgacccctccccctccctcgctcccgtgAATTTCCTCCAC
ACTGTTCCTTTTCAGACACCCGAGCGAAAAACCGCCCAACTGGCTGCTTT
GCACAAGCGGACTGCCTCCCATGGGGTCATTCACATGACCGATGATTTAT
ACCCGTATTATGCTTTGGAGCACCCGCGGCCGTACCACCTGATCGCCCTC
TTTACAGCCACGgtgcgtttcctccctcccgcacgtCTTCCCGAACTCGA
GGGTATCATGCCCATTTTAGGGATCTAGgtgctttttcttctgcGCGTTG
ATGTTCTCTTTGCCCTGTAAGGTCCGATTAAGTTCTTTTTCTACCGCAAG
CCCGACTTCATGTACGCTGCtgccaaccctccctccctccctccctcgct
cccatccattcctcctttccaatcTGACAGGACCCCAAGTACCGGTGTCT
GCAGTGCCTGGCCATCGAGCTGGAATTCGATATATGCGCCGACAATTACT
ACCGCCTCTACCCGGATGTATCCTCCAACtgtag
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Coding sequence (CDS) from alignment at CM002471.1:550194..551027+

>rna7419 ID=rna7419|Name=rna7419|organism=Nannochloropsis gaditana|type=CDS|length=1332bp|location=Sequence derived from alignment at CM002471.1:550194..551027+ (Nannochloropsis gaditana)
ATGTTCTCTTTGTCCGTACGACGGGCTTTAAGGCCCTACAGCGTGAAGAT
GCAGCCACTACGAGTGCTTCAGCTGGTGGTTTGGCTCGCTACGACTGTGG
TCATGGCAGGAGCTGCAGGCACGACGAAAAACAAGACACCCGAGCGAAAA
ACCGCCCAACTGGCTGCTTTGCACAAGCGGACTGCCTCCCATGGGGTCAT
TCACATGACCGATGATTTATACCCCCACGGACCCCAAGTACCGGTGTCTG
CAGTGCCTGGCCATCGAGCTGGAATTCGATATATGCGCCGACAATTACTA
CCGCCTCTACCCGGATGTATCCTCCAACtgtagATGTTCTCTTTGTCCGT
ACGACGGGCTTTAAGGCCCTACAGCGTGAAGATGCAGCCACTACGAGTGC
TTCAGCTGGTGGTTTGGCTCGCTACGACTGTGGTCATGGCAGGAGCTGCA
GGCACGACGAAAAACAAGACACCCGAGCGAAAAACCGCCCAACTGGCTGC
TTTGCACAAGCGGACTGCCTCCCATGGGGTCATTCACATGACCGATGATT
TATACCCCCACGGACCCCAAGTACCGGTGTCTGCAGTGCCTGGCCATCGA
GCTGGAATTCGATATATGCGCCGACAATTACTACCGCCTCTACCCGGATG
TATCCTCCAACtgtagATGTTCTCTTTGTCCGTACGACGGGCTTTAAGGC
CCTACAGCGTGAAGATGCAGCCACTACGAGTGCTTCAGCTGGTGGTTTGG
CTCGCTACGACTGTGGTCATGGCAGGAGCTGCAGGCACGACGAAAAACAA
GACACCCGAGCGAAAAACCGCCCAACTGGCTGCTTTGCACAAGCGGACTG
CCTCCCATGGGGTCATTCACATGACCGATGATTTATACCCCCACGGACCC
CAAGTACCGGTGTCTGCAGTGCCTGGCCATCGAGCTGGAATTCGATATAT
GCGCCGACAATTACTACCGCCTCTACCCGGATGTATCCTCCAACtgtagA
TGTTCTCTTTGTCCGTACGACGGGCTTTAAGGCCCTACAGCGTGAAGATG
CAGCCACTACGAGTGCTTCAGCTGGTGGTTTGGCTCGCTACGACTGTGGT
CATGGCAGGAGCTGCAGGCACGACGAAAAACAAGACACCCGAGCGAAAAA
CCGCCCAACTGGCTGCTTTGCACAAGCGGACTGCCTCCCATGGGGTCATT
CACATGACCGATGATTTATACCCCCACGGACCCCAAGTACCGGTGTCTGC
AGTGCCTGGCCATCGAGCTGGAATTCGATATATGCGCCGACAATTACTAC
CGCCTCTACCCGGATGTATCCTCCAACtgtag
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Synonyms
Publications