rna7418, rna7418 (mRNA) Nannochloropsis gaditana

Overview
Namerna7418
Unique Namerna7418
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length517
Alignment locationCM002471.1:549028..549389 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101654g1.176.mrna
Orig protein idgnl|cribi|Naga_101654g1.176
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:549028..549389 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101654g1gene7177Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7418rna7418-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23271.1cds7401Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7418 ID=rna7418|Name=rna7418|organism=Nannochloropsis gaditana|type=mRNA|length=517bp
ACTGCTCGCGAATGTGCTTGGAACTCGCGTTGTCAGGGCGTGGCATCCTT
TTCCTTATCCTTTTCCTGCCTTCAGTCCCCTCAGAGATGGCAACAGAGAT
GGCAAGAAGTCCTGCCTTGCACCCACCGTCGCCGCCGCCACTGCCCCAAC
AGTGTCGACAGCAACAGCAACGGCAAGAACCGGAATATTTTCGTTCACGT
GTCTCATACGGCAGAATGATACGAAGGACATGGCAGCCTGCCTGGCAAAG
CGCCCCTAATAGTTGGAGTCGGCCATGCCTGTTGATTGCCTCCGGCTTTT
GTACGGCCTTGGGAGTTGGTTATCAAGCCGTGGCCATTGCTGGCTGGTTA
CAGTATTATCTCCTCCTACGATTCTTGGACCGTGGCCGTCGGCGGTTGCG
CCTGTGGGTACTGGCATGGTTGGTGCATGCGGCAGGATGGACCCTGGCGA
TGGCGGTAGGTAGGTAGGGAGGGAGGGAGAGGGGAGGGAGGGTAGAAAAG
GGTGAAGGTGGGAAGGA
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protein sequence of rna7418

>rna7418-protein ID=rna7418-protein|Name=rna7418|organism=Nannochloropsis gaditana|type=polypeptide|length=109bp
PHPPSLFTFADSPSFPPPSRLPSPGHGPSASAPPHPLSLGGFRLRLAVSG
GDVGLPHRPAWSRRQGPSGGGKPVSKRSGKGGCGQSGDGSLASAPTAVNS
KAQNAISNM
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mRNA from alignment at CM002471.1:549028..549389+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7418 ID=rna7418|Name=rna7418|organism=Nannochloropsis gaditana|type=mRNA|length=362bp|location=Sequence derived from alignment at CM002471.1:549028..549389+ (Nannochloropsis gaditana)
ccccaccctccctccctcttcaccttCGCtgactctccctccttcccccc
cccttcccgcctcccctccccaggtCACGGTCCCTCGGCCTCAGCACCGC
CCCACCCTCTATCCCTGGGCGGGTTTCGTCTTCGGCTGGCTGTGTCTGGC
GGTGACGTTGGGCTACCTCATCGTCCTGCTTGGTCCCGGCGCCAAGGCCC
TTCGGGAGGCGGCAAGCCGGTTTCGAAGAggagtgggaagggagggtgcg
gTCAAAGTGGAGACGGAAGCCTTGCTTCAGCACCGACAGCGGTAAATTCC
AAGGCACAGAATGCAATAAGTAATATGTAGTATGTAATAAGTAATGTACG
CTTGGATGTCAT
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Coding sequence (CDS) from alignment at CM002471.1:549028..549389+

>rna7418 ID=rna7418|Name=rna7418|organism=Nannochloropsis gaditana|type=CDS|length=330bp|location=Sequence derived from alignment at CM002471.1:549028..549389+ (Nannochloropsis gaditana)
ccccaccctccctccctcttcaccttCGCtgactctccctccttcccccc
cccttcccgcctcccctccccaggtCACGGTCCCTCGGCCTCAGCACCGC
CCCACCCTCTATCCCTGGGCGGGTTTCGTCTTCGGCTGGCTGTGTCTGGC
GGTGACGTTGGGCTACCTCATCGTCCTGCTTGGTCCCGGCGCCAAGGCCC
TTCGGGAGGCGGCAAGCCGGTTTCGAAGAggagtgggaagggagggtgcg
gTCAAAGTGGAGACGGAAGCCTTGCTTCAGCACCGACAGCGGTAAATTCC
AAGGCACAGAATGCAATAAGTAATATGTAG
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Synonyms
Publications