rna7409, rna7409 (mRNA) Nannochloropsis gaditana

Overview
Namerna7409
Unique Namerna7409
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1171
Alignment locationCM002471.1:513976..515849 +

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Properties
Property NameValue
Producttranscriptional regulator
Orig transcript idgnl|cribi|Naga_100181g6.3852.mrna
Orig protein idgnl|cribi|Naga_100181g6.3852
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:513976..515849 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100181g6gene7168Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7409rna7409-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23277.1cds7392Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7409 ID=rna7409|Name=rna7409|organism=Nannochloropsis gaditana|type=mRNA|length=1171bp
AGGGCGAGCGGGAGGGTGGGAAGGAAGGAAACAGGGAGAAAGATAAAGTG
TCGCTCCCTGAGGCGTTGGTCAAGAGGCTGCTGGGAAAGGGATGGGGCCC
TAGAGGGCCGATAATCTGGAGGGAGGTGGACGAGATCCTGGGCGGGTGGG
GGGAAGGCGGGAGGGAGGAGGGGAGGGAGGGAGGAAGGGAGGAAGGAAAG
GCGCTCCCCGGGGGGAGAACGGTCCTCCTCGTCTTTCAAGCTTAGCAATC
TCGACAGGTATAGAGTGCAAAAAGCGTGGCGGGTCTGGTGGAGGAAAGAG
CAGAAACGTCATACGGACCACGCCTGGAGGCCGCCCTACCCCCTTCCTCC
CCCCCTTCCTCACCCCGTCCTGCCTCCCCCCCTGGAGAGCCTCAGAATAG
ACATGGGAGGCATCTTGGCGGATGGGGGTATCTTTCCTGACTGTTATATT
GCCTGCGAAGCCAATGGGGGAAGGGAAGGAGGGAAAGAGGGAGGGCGGGA
AGGAGGGAGCGTCGCATGTGCCGCGCATCGAAGCATTTTGGCAGCGAGGT
CAGAACGGATGGCGGCTCACTTTCGTTTTGCGGAGATGGGAGAGGGCGAG
AAGGAGGGGACGCCCACGTTCGTATTCCCGTCGCTCTCTGCAAGCACGCT
CAAACCCTTCTTGACATATCTATACACGGGGCGCCTGCCGGAGTTGGAGG
AGGGGAGGGAGGAGGGAGGGGAGAAGTCGGGGAGGTGGAGGACAGAGACG
CTGATGGAGCTCGCTGTGGTGGCGGATGAATTTTTGCTCCCTGGCCTCGT
TCGCGAGTGCGAGTGGGAGCTCTGTTTAAGTCAGGACTACATTAAGGGGG
AGGGTACAGAAGAGACAGGGGCCGACGCAGAGGTGGAAGCGGCGGCGCGT
CTCTTTAAACTCACAAACTTGTTGCCAGGAATGAGCTTGTTGAGAGCTCA
ATCGGCTTTGAGACTTGTCAAGGGGTGTAAGTATGTGTTGCAGGGAATGG
GGGAAGGAGGATGTCAAGATGGGGAAGACGAGGGCGAGGTATTGCTCAAA
GAGGCCATTGACTGTTTGATGGACAAATAAGCGCGAGGGCACCCAGAAAT
TACCAACTGTGTAAATTATAATGTAACGAATAATTTTAAGAGTAAGGAAA
GCATTAATTTGAAACTTTTCC
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protein sequence of rna7409

>rna7409-protein ID=rna7409-protein|Name=rna7409|organism=Nannochloropsis gaditana|type=polypeptide|length=500bp
MRLYAHVARRLMEERGSLGEDEKERSQAEGTAATSFPTSSPPSFPPYLQK
WLETYASTEFEASALATESLLDSEVEKEKVKRRNNRRKKHHEGQGKGGKE
DEKEEEEEEEEEEEEEEEEEEERRLFALYGEAMELEYAFFAEQWQESQEW
RGLDPSVLITDFDGTCTLADTTHLLARAAGHFQSPASTAEQWRRLEEGYL
SQLSGVLDPLLTGLPPSVPPSLPPSQPEAKDLGGAAAFLAPLDAFDIKAV
AAVSDSRILKGIDLSLLPALLTSSSPMPSFSPPPSSLPSSFAAALALRPY
CATTLRYAADRSSSPSSSSLFHVLSVSWSSFLITAATGLSPAKVTCNHLV
EEVGSDGRLLTTGAIEVKVGGPGGKLGHFQRLLQGAEAGPEGGGQKGRGR
SSPSVFIGDSVTDVLALMAADVGIVVGESGTLRRMLRRFGWKIRGLVAFP
VKKEERGKASRVVYAAEDWAEIAAFLYGTDLVKKMVEEGRRNKGNTYCGE
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mRNA from alignment at CM002471.1:513976..515849+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7409 ID=rna7409|Name=rna7409|organism=Nannochloropsis gaditana|type=mRNA|length=1874bp|location=Sequence derived from alignment at CM002471.1:513976..515849+ (Nannochloropsis gaditana)
ATGCGCCTTTACGCCCATGTTGCCCGTCgattgatggaggagagaggctc
cctcggcgaggacgagaaggaacgATCGCAGGCTGAGGGCACCGCGGcga
cttccttccctacctcttccccgccctccttccctccctacctgcaaAAA
TGGCTGGAAACGTACGCAAGCACCGAATTTGAGGCAAGTGCTCTGGCAAC
AGAATCGCTATTGGATTCCGAAgttgaaaaggagaaggtaaagaggagga
ataatcgaagaaagaagcaccatgaagggcaagggaagggagggaaggag
gacgagaaggaggaagaggaggaggaggaggaggaggaggaggaggagga
ggaggaggaggaggaacggcgTTTATTCGCCCTGTACGGAGAAGCCATGG
AGCTGGAATACGCCTTTTTTGCGGAGCAATGGCAGGAATCGCAGGAGTGG
CGCGGCCTCGAtccttccgtcctcatcacGGACTTCGACGGCACCTGCAC
CCTGGCAGACACCACGCACCTTCTGGCGCGCGCCGCGGGGCACTTCCAGA
GCCCTGCTTCCACGGCAGAGCAGTGGAGGCGGTTGGAAGAGGGCTACCTC
TCTCAGCTCTCCGGCGTCCTTGACCCCCTCCTGacgggtcttcctccctc
cgtccctccctccctgcctccctcccagcccgaGGCGAAGGACCTGGGTG
GGGCCGCTGCCTTCTTGGCCCCCCTGGATGCCTTCGATATCAAGGCAGTG
GCGGCGGTCAGTGACTCCCGGATTCTCAAGGGGATCgacctctctctcct
tcccgccctcctcacctcgtcctccccaatgccttctttttcgccccccc
cctcctcccttccttcctcctttgctgctgccctcgccctccgtccttaC
TGCGCCACCACCCTTCGCTACGCCGCCGACCGCTCctcgtcgccttcttc
ctcctctctcttccacgtcctctccGTCTCGTGGTCGTCATTCCTCATCA
CTGCCGCCACCGGGCTCAGCCCCGCCAAGGTCACTTGCAACCAcctcgtg
gaggaggtaggatCAGACGGCCGCCTTCTTACCACCGGGGCAATCGAGGT
GAAGGTAGGAGGTCCGGGGGGGAAACTCGGCCATTTCCAGCGTTTGCTGC
AAGGCGCGGAGGCTGGacccgagggaggagggcagaaagggcGTGGACGG
TCGTCCCCGTCGGTGTTTATCGGAGATTCGGTTACGGATGTGTTGGCGTT
GATGGCAGCAGATGTAGGGATTGTGGTGGGTGAATCTGGGACTTTGAGAC
GGATGCTGCGAAGATTTGGATGGAAGATTCGGGGGCTAGTCGCATTTCCt
gtcaagaaagaggaaaggggcaaaGCCAGCCGGGTCGTCTACGCGGCCGA
GGATTGGGCGGAAATTGCAGCTTTTTTGTATGGGACGGATTTAGTGAaga
agatggtggaggagggaagaaggaataAGGGCAATACTTATTGCGGAGAA
TGAGTGGAGTCATCTCACGGTAGACACGGGATCAATGGGAGAAATGCCGC
ATGTGTTACTCGTGACTAATCGTACCAAAAAAAGTATTTTAAAAACAGCC
TGTGAATTATTTTTCTGGGTATGTTTTTTCTTATGCTGTCTGCAGTATGT
TTTAAAATATGTATGATTACATCTTTACATGCCTTTTTGTGCTGTGTCGC
ATTTTACCTTAAAAGCTTGTAGTAGCTTCCAAAATTAACCTCCCGCCCGG
CCGCGTTTTTTCAGTTACCCTCTTGTACGGTGCTGCCGCTTGTCCCCGTG
ATGAGCGTTGGAAAACGTGTTTAAAAGGCCTACAGTGTCTGGTTGTATAC
GGCGTGATGCTTGCAACGATGCGG
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Coding sequence (CDS) from alignment at CM002471.1:513976..515849+

>rna7409 ID=rna7409|Name=rna7409|organism=Nannochloropsis gaditana|type=CDS|length=1503bp|location=Sequence derived from alignment at CM002471.1:513976..515849+ (Nannochloropsis gaditana)
ATGCGCCTTTACGCCCATGTTGCCCGTCgattgatggaggagagaggctc
cctcggcgaggacgagaaggaacgATCGCAGGCTGAGGGCACCGCGGcga
cttccttccctacctcttccccgccctccttccctccctacctgcaaAAA
TGGCTGGAAACGTACGCAAGCACCGAATTTGAGGCAAGTGCTCTGGCAAC
AGAATCGCTATTGGATTCCGAAgttgaaaaggagaaggtaaagaggagga
ataatcgaagaaagaagcaccatgaagggcaagggaagggagggaaggag
gacgagaaggaggaagaggaggaggaggaggaggaggaggaggaggagga
ggaggaggaggaggaacggcgTTTATTCGCCCTGTACGGAGAAGCCATGG
AGCTGGAATACGCCTTTTTTGCGGAGCAATGGCAGGAATCGCAGGAGTGG
CGCGGCCTCGAtccttccgtcctcatcacGGACTTCGACGGCACCTGCAC
CCTGGCAGACACCACGCACCTTCTGGCGCGCGCCGCGGGGCACTTCCAGA
GCCCTGCTTCCACGGCAGAGCAGTGGAGGCGGTTGGAAGAGGGCTACCTC
TCTCAGCTCTCCGGCGTCCTTGACCCCCTCCTGacgggtcttcctccctc
cgtccctccctccctgcctccctcccagcccgaGGCGAAGGACCTGGGTG
GGGCCGCTGCCTTCTTGGCCCCCCTGGATGCCTTCGATATCAAGGCAGTG
GCGGCGGTCAGTGACTCCCGGATTCTCAAGGGGATCgacctctctctcct
tcccgccctcctcacctcgtcctccccaatgccttctttttcgccccccc
cctcctcccttccttcctcctttgctgctgccctcgccctccgtccttaC
TGCGCCACCACCCTTCGCTACGCCGCCGACCGCTCctcgtcgccttcttc
ctcctctctcttccacgtcctctccGTCTCGTGGTCGTCATTCCTCATCA
CTGCCGCCACCGGGCTCAGCCCCGCCAAGGTCACTTGCAACCAcctcgtg
gaggaggtaggatCAGACGGCCGCCTTCTTACCACCGGGGCAATCGAGGT
GAAGGTAGGAGGTCCGGGGGGGAAACTCGGCCATTTCCAGCGTTTGCTGC
AAGGCGCGGAGGCTGGacccgagggaggagggcagaaagggcGTGGACGG
TCGTCCCCGTCGGTGTTTATCGGAGATTCGGTTACGGATGTGTTGGCGTT
GATGGCAGCAGATGTAGGGATTGTGGTGGGTGAATCTGGGACTTTGAGAC
GGATGCTGCGAAGATTTGGATGGAAGATTCGGGGGCTAGTCGCATTTCCt
gtcaagaaagaggaaaggggcaaaGCCAGCCGGGTCGTCTACGCGGCCGA
GGATTGGGCGGAAATTGCAGCTTTTTTGTATGGGACGGATTTAGTGAaga
agatggtggaggagggaagaaggaataAGGGCAATACTTATTGCGGAGAA
TGA
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Synonyms
Publications