rna7407, rna7407 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7407
Unique Name	rna7407
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	513
Alignment location	CM002471.1:501653..504197 -

Link to JBrowse

Properties


Property Name	Value
Product	Dymeclin
Orig transcript id	gnl\|cribi\|Naga_100158g2.7780.mrna
Orig protein id	gnl\|cribi\|Naga_100158g2.7780
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:501653..504197 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100158g2	gene7166	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23284.1	cds7390	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7407	rna7407-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:501653..504197-
coding sequence from alignment at CM002471.1:501653..504197-

mRNA sequence

>rna7407 ID=rna7407|Name=rna7407|organism=Nannochloropsis gaditana|type=mRNA|length=513bp
ATGGTAGAAAGCGAGAAGAGGAGGGGAAATCAAGAAGCACTGCTTTGCTC
TTGTAGCGGAGCAAGAGAAGGGTTTTCATGTCGTGTACATGCTTTTCCTT
GCAAGACGGATCACAAGGGACAGCTCGCGTTCAGCGCGAGTGACGAGTCG
TGTGAGACTACTTGTATTCCTTTCAAAACCCATGCTTTTCAAGAAAAAGA
TACGAACAAAGATAGGTCAGGTGGAAGTATATCCGAAGGGGGGGGCAGGG
CTGGTAATGGAGTGAGTTTTCGATCATATAAAAGAGGACAGAGCAGAGCT
TCGAATAATGAGAGAGAAAGAGAGGAAGAACGCCAATACTCTATACGATA
CACCAACTTTGATATGCTTTTCGTGCCTCATCCCTTGTGCCGTCCTTATT
TTCACCCAGGCCACCATCCTATCGCCCTGGCCTACTTGTCACTCCACACA
CAACACTCCACACGTTATACATTTCTACCTTCCAAAACAAAAGTTTCTCA
TTCTTTCCCCTAG

protein sequence of rna7407

>rna7407-protein ID=rna7407-protein|Name=rna7407|organism=Nannochloropsis gaditana|type=polypeptide|length=717bp
MWRSLYSLMRRESAVQAAPGGAREGDASRAASTRPPSSRSPSQAAPTPST
DSTPASLLTSSTGTGSSQSIASLSMAAAAAVASPAAWAGVRRESWQPKSE
PEEWARRGRQKRERSLLLLLLLAYQGREEQRVWNPYRALLETLQDERYQY
GEGEEEERPEGGREGGRGGGAPALLRLPFDRLFTAFGRLLPLGEPAPLLF
YTLLSSPNPLFLSTSLAQGDVESLLLPLLHQLYRPDRLPSLPPSPRPLYL
LLTILLLFSQDSAFNTALFRRHFLPSVPWYKERLLGRTSLGSLALLCLLR
ALLFALHPAPAPSLKPIPETPSTSPTTSSSSQESTSSLYLLQTSGAILLN
LAAQAEHLHDYAALRLTQVLLLLLRRYVRLVEGLLSSSCPPLPLPAAGAV
TAAAPSSFPPSSSTSLPSHHPPGHSAALSSYSPPSAASSDPNPSLTHALL
SSGLRTLLSFFSIALSPSLLPSNLALVHSLLYSRQHLEPLLAHPAVRALA
TASFPPSLPPFPSPSHPVQEGGGGGGLGLVPGVLEFFGRLFDETEGTLSV
EQAMQVLEKGAREWVGGREGGRAGGLGAGMAADPELKFTYEEETEADSFF
VPYIWETIYTITKEDLWWMPQYIQLFGPTPSPSLPPSAPPPRPPPSDAAP
SSQGMVRRLLAGTMSVIPTSLISLPPPSRAQNQLSRNGRTSTVDAGAEED
AGRPSITALPVVVTMNV

mRNA from alignment at CM002471.1:501653..504197-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7407 ID=rna7407|Name=rna7407|organism=Nannochloropsis gaditana|type=mRNA|length=2545bp|location=Sequence derived from alignment at CM002471.1:501653..504197- (Nannochloropsis gaditana)
CATGTGGCGTAGCCTCTACTCACTCATGCGAAGAGAGAGTGCGGTGCAAG
CAGCCCCGGGTGGTGCAAGGGAAGGAGACGCCTCGAGAGCAGCATCGACA
CGGCCCCCCTCTTCCAGGTCCCCCTCCCAGGCCGCCCCCACCCCCTCCAC
GGATTCCACCCCGGCGTCTCTGCTCACTTCCAGCACCGGCACAGGCAGTA
GTCAGAGCATTGCGAGCCTCTCCATGGCCGCCGCCGCTGCTGTAGCGTCT
CCTGCGGCCTGGGCTGGGGTGCGGCGAGAATCGTGGCAGCCAAAAAGCGA
GCCGGAGGAGTGGGCGCGTCGTGGGCGTCAGAAGCGGGAGCGAAGCCTCC
TGCTCTTACTCCTCCTTGCCTATCAGGGGCGCGAGGAGCAGCGGGTGTGG
AATCCCTACCGGGCACTTCTGGAGACCTTGCAAGATGAGCGGTATCAGTA
CGGAGAAGGGGAAGAGGAGGAAAGGCCCGAGGGAGGGAGGGAAGGAGGGC
GAGGTGGAGGGGCTCCGGCACTCCTACGGCTTCCCTTTGACCGGCTTTTC
ACGGCGTTCGGCCGCCTGCTCCCCCTGGGCGAGCCCGCCCCCCTCCTCTT
CTATACGCTCCTCTCCTCTCCCAATCCGCTCTTTCTCTCCACCAGCCTGG
CCCAAGGGGACGTGGAAAGCCTCCTCCTTCCCCTCCTCCATCAGCTCTAC
CGCCCCGACCGCCTCCCCTCCCTCCCTCCCTCCCCCCGGCCCCTCTACCT
CCTCCTCACCATCCTCCTCCTCTTCTCCCAGGACTCGGCCTTCAACACGG
CCCTCTTCCGCCGCCATTTCCTCCCCTCCGTCCCTTGGTATAAGGAGAGG
CTCCTGGGCCGCACTTCGCTCGGCTCCCTCGCCCTCCTCTGCCTCCTCCG
CGCTCTCCTATTCGCGCTCCACCCGGCCCCCGCGCCCTCGCTTAAACCCA
TCCCAGAGACGCCCAGCACAAGCCCCACGACCAGCAGCAGCAGCCAGGAA
AGCACCAGCTCCCTCTACCTGCTCCAGACCTCCGGGGCCATCCTCCTGAA
TCTGGCGGCCCAGGCCGAGCATCTCCATGACTACGCCGCCCTCCGCCTCA
CGCAGGTTCTCCTCCTCCTCCTCCGCCGCTACGTCCGCCTGGTCGAAGGT
CTTCTTTCCTCCTCCTGTCCTCCGTTGCCGCTCCCAGCCGCCGGTGCTGT
CACGGCCGCTGCCCCCTCCTCTTTCCCTCCCTCCTCCTCCACCTCCCTTC
CTTCACACCACCCTCCGGGCCACTCAGCCGCCCTTTCCTCCTACTCCCCT
CCCTCCGCAGCGTCCTCCGACCCCAACCCCTCCCTCACCCACGCCCTCCT
CTCCTCTGGCCTGCGCACCCTCCTCTCCTTCTTCTCCATTGCCCTTTCTC
CCTCCCTGCTTCCCTCCAACCTGGCCCTCGTTCACTCCCTTCTCTACTCC
CGCCAACACTTGGAACCCCTCCTCGCCCACCCGGCCGTGCGAGCTCTGGC
TACCGCCTCCTTCCCGCCCTCCCTCCCGCCCTTCCCCTCTCCCTCCCACC
CCGTGCAGGAGGGAGGGGGGGGGGGCGGATTGGGGCTCGTCCCGGGGGTC
CTCGAATTTTTCGGTCGCCTCTTCGACGAGACGGAAGGCACGCTCTCGGT
GGAGCAAGCGATGCAGGTGCTGGAAAAGGGGGCGCGGGAGTGGGTGGGAG
GGAGGGAGGGAGGGAGGGCGGGCGGGTTGGGTGCGGGAATGGCGGCGGAC
CCAGAGCTGAAGTTCACGTACGAGGAGGAAACCGAGGCAGATTCCTTTTT
TGTGCCCTACATTTGGGAGACCATCTATACCATCACCAAAGAAGACCTCT
GGTGGATGCCTCAGTATATTCAGCTCTTTGGCCCCACCCCGTCGCCTTCG
CTCCCTCCTTCGGCGCCTCCTCCCCGCCCTCCTCCCTCGGACGCTGCCCC
GTCCTCGCAGGGAATGGTGCGCAGGCTGCTGGCAGGAACCATGAGCGTGA
TTCCGACCTCCCTCATTTCTTTGCCTCCCCCCTCGCGGGCCCAGAATCAG
CTTTCTCGGAATGGGCGGACGAGTACGGTCGATGCGGGTGCTGAGGAGGA
CGCGGGCCGCCCTTCCATTACCGCGTTGCCTGTGGTGGTGACCATGAACG
TGTAGTAGGGTTCAAAAAGGATCCGCGAAGGACAAGGACAGGGATCTGGC
GGCGGACATGCGGGTGTGGAAGGGTGGAGAATGGTGGATGGACACGACTC
AGGTCGCGAAATTGTCGAGGGGGGAGGACTTCGTTGGATGGAAGCGAGGG
AACGCCGCGAGGACGGGAACGAGAGGGGTTGGGCACGCAGGGGGCAGCGA
TCCAGCTGTTGAAAGCGTGTTCTCTAGGGGAAAGAATGAGAAACTTTTGT
TTTGGAAGGTAGAAATGTATAACGTGTGGAGTGTTGTGTGTGGAGTGACA
AGTAGGCCAGGGCGATAGGATGGTGGCCTGGGTGAAAATAAGGACGGCAC
AAGGGATGAGGCACGAAAAGCATATCAAAGTTGGTGTATCGTATA

Coding sequence (CDS) from alignment at CM002471.1:501653..504197-

>rna7407 ID=rna7407|Name=rna7407|organism=Nannochloropsis gaditana|type=CDS|length=2154bp|location=Sequence derived from alignment at CM002471.1:501653..504197- (Nannochloropsis gaditana)
ATGTGGCGTAGCCTCTACTCACTCATGCGAAGAGAGAGTGCGGTGCAAGC
AGCCCCGGGTGGTGCAAGGGAAGGAGACGCCTCGAGAGCAGCATCGACAC
GGCCCCCCTCTTCCAGGTCCCCCTCCCAGGCCGCCCCCACCCCCTCCACG
GATTCCACCCCGGCGTCTCTGCTCACTTCCAGCACCGGCACAGGCAGTAG
TCAGAGCATTGCGAGCCTCTCCATGGCCGCCGCCGCTGCTGTAGCGTCTC
CTGCGGCCTGGGCTGGGGTGCGGCGAGAATCGTGGCAGCCAAAAAGCGAG
CCGGAGGAGTGGGCGCGTCGTGGGCGTCAGAAGCGGGAGCGAAGCCTCCT
GCTCTTACTCCTCCTTGCCTATCAGGGGCGCGAGGAGCAGCGGGTGTGGA
ATCCCTACCGGGCACTTCTGGAGACCTTGCAAGATGAGCGGTATCAGTAC
GGAGAAGGGGAAGAGGAGGAAAGGCCCGAGGGAGGGAGGGAAGGAGGGCG
AGGTGGAGGGGCTCCGGCACTCCTACGGCTTCCCTTTGACCGGCTTTTCA
CGGCGTTCGGCCGCCTGCTCCCCCTGGGCGAGCCCGCCCCCCTCCTCTTC
TATACGCTCCTCTCCTCTCCCAATCCGCTCTTTCTCTCCACCAGCCTGGC
CCAAGGGGACGTGGAAAGCCTCCTCCTTCCCCTCCTCCATCAGCTCTACC
GCCCCGACCGCCTCCCCTCCCTCCCTCCCTCCCCCCGGCCCCTCTACCTC
CTCCTCACCATCCTCCTCCTCTTCTCCCAGGACTCGGCCTTCAACACGGC
CCTCTTCCGCCGCCATTTCCTCCCCTCCGTCCCTTGGTATAAGGAGAGGC
TCCTGGGCCGCACTTCGCTCGGCTCCCTCGCCCTCCTCTGCCTCCTCCGC
GCTCTCCTATTCGCGCTCCACCCGGCCCCCGCGCCCTCGCTTAAACCCAT
CCCAGAGACGCCCAGCACAAGCCCCACGACCAGCAGCAGCAGCCAGGAAA
GCACCAGCTCCCTCTACCTGCTCCAGACCTCCGGGGCCATCCTCCTGAAT
CTGGCGGCCCAGGCCGAGCATCTCCATGACTACGCCGCCCTCCGCCTCAC
GCAGGTTCTCCTCCTCCTCCTCCGCCGCTACGTCCGCCTGGTCGAAGGTC
TTCTTTCCTCCTCCTGTCCTCCGTTGCCGCTCCCAGCCGCCGGTGCTGTC
ACGGCCGCTGCCCCCTCCTCTTTCCCTCCCTCCTCCTCCACCTCCCTTCC
TTCACACCACCCTCCGGGCCACTCAGCCGCCCTTTCCTCCTACTCCCCTC
CCTCCGCAGCGTCCTCCGACCCCAACCCCTCCCTCACCCACGCCCTCCTC
TCCTCTGGCCTGCGCACCCTCCTCTCCTTCTTCTCCATTGCCCTTTCTCC
CTCCCTGCTTCCCTCCAACCTGGCCCTCGTTCACTCCCTTCTCTACTCCC
GCCAACACTTGGAACCCCTCCTCGCCCACCCGGCCGTGCGAGCTCTGGCT
ACCGCCTCCTTCCCGCCCTCCCTCCCGCCCTTCCCCTCTCCCTCCCACCC
CGTGCAGGAGGGAGGGGGGGGGGGCGGATTGGGGCTCGTCCCGGGGGTCC
TCGAATTTTTCGGTCGCCTCTTCGACGAGACGGAAGGCACGCTCTCGGTG
GAGCAAGCGATGCAGGTGCTGGAAAAGGGGGCGCGGGAGTGGGTGGGAGG
GAGGGAGGGAGGGAGGGCGGGCGGGTTGGGTGCGGGAATGGCGGCGGACC
CAGAGCTGAAGTTCACGTACGAGGAGGAAACCGAGGCAGATTCCTTTTTT
GTGCCCTACATTTGGGAGACCATCTATACCATCACCAAAGAAGACCTCTG
GTGGATGCCTCAGTATATTCAGCTCTTTGGCCCCACCCCGTCGCCTTCGC
TCCCTCCTTCGGCGCCTCCTCCCCGCCCTCCTCCCTCGGACGCTGCCCCG
TCCTCGCAGGGAATGGTGCGCAGGCTGCTGGCAGGAACCATGAGCGTGAT
TCCGACCTCCCTCATTTCTTTGCCTCCCCCCTCGCGGGCCCAGAATCAGC
TTTCTCGGAATGGGCGGACGAGTACGGTCGATGCGGGTGCTGAGGAGGAC
GCGGGCCGCCCTTCCATTACCGCGTTGCCTGTGGTGGTGACCATGAACGT
GTAG

Synonyms

Publications