rna7405, rna7405 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7405
Unique Name	rna7405
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	318
Alignment location	CM002471.1:499548..501203 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100158g4.7782.mrna
Orig protein id	gnl\|cribi\|Naga_100158g4.7782
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:499548..501203 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100158g4	gene7164	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7405	rna7405-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23286.1	cds7388	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:499548..501203+
coding sequence from alignment at CM002471.1:499548..501203+

mRNA sequence

>rna7405 ID=rna7405|Name=rna7405|organism=Nannochloropsis gaditana|type=mRNA|length=318bp
ATGAGGGTACTTGTCACATGGAGCATAAAACACAGCTTAAGACTACTTAG
CCATGCGGGCCCATCCTGTCACAAAATATACCATGCATATGAAAAAAATG
ATATTCAAGAATACAAAGATAGAAAAATAATCTTTTTGAAAGTGCTCCAG
GAATCGCCACTGTGCGGGGCTCACTTCTTACAAACTGATGACACGATTAC
AACCGACGTCGGAGAAATTGATGAGAGGTATCGGATGAATCGCCCTAATT
TTGACAAATCGGTCGGGCGTGTGATGTACATATACAATACGAAAAGTCGT
AAACTCAATAAAGGATGA

protein sequence of rna7405

>rna7405-protein ID=rna7405-protein|Name=rna7405|organism=Nannochloropsis gaditana|type=polypeptide|length=551bp
MHRVAFGAMALASLSAYTSAGSVEECLAPATFSASKDYFPSAAGATVDEA
RKFTIEYDQGYKVVTNKAGKRQYVLYRCGAPEPDVSALTLPAGYERRILS
VPAQKAVTAETVSYDFLNLLQNDKTDMGVTDRLISLSPYSVDACAQKALT
CSNNVMSPGLNAAVPGWGAKPEEYDALMNEANVYFDFSESYKGTGATDKT
VIFSATSETSLLGRGEWLKFAAAFFNLDGVAEQKFDRTREKYYELSDAAK
ANPSRPKVSFVNVDTYGDSTVDYFMIDVAGYKRSAVLDAGGYIANVEDFV
GAPNVSFPSTMRAARWAVPKEAGAEREAAIKAFAANLKDTDILIDERYSP
SVLSRDESLAAYGLSGNDMEYPFIAHGKLYREDRTGSATGSAWFESGVSR
PDIVLMDFIKVIQPSTPAVASHERVFLRDLAQGETKQVVTAAECERGYPV
CGLSLADKAAAICPSDQFKTCSDGSKVFLTPSSDCTRFQACPMRSMSDYT
GLPASSNIILAVFMSFVGLVLIAAGFYFGRKKARTTSPGGLTPNGNAATL
H

mRNA from alignment at CM002471.1:499548..501203+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7405 ID=rna7405|Name=rna7405|organism=Nannochloropsis gaditana|type=mRNA|length=1656bp|location=Sequence derived from alignment at CM002471.1:499548..501203+ (Nannochloropsis gaditana)
ATGCATCGTGTTGCCTTCGGCGCAATGGCCTTGGCGAGCCTATCCGCCTA
CACAAGTGCAGGATCCGTGGAGGAGTGCCTCGCACCCGCGACATTCAGTG
CATCCAAAGACTATTTCCCTTCCGCGGCCGGTGCCACCGTCGATGAAGCC
CGTAAGTTTACTATTGAATACGATCAGGGGTACAAAGTGGTGACCAACAA
GGCAGGCAAGCGACAGTACGTGCTCTATCGGTGCGGAGCCCCCGAGCCGG
ATGTCAGCGCTCTGACCCTCCCTGCCGGCTATGAGCGCCGCATCCTTTCC
GTGCCCGCCCAGAAAGCTGTAACGGCTGAAACTGTCAGCTACGACTTTCT
GAACCTCCTTCAGAACGACAAGACGGACATGGGCGTGACCGATCGTCTCA
TCTCGCTTTCTCCGTACTCCGTGGATGCCTGTGCTCAAAAAGCTCTGACC
TGCAGCAACAATGTCATGTCCCCTGGTTTGAATGCAGCGGTGCCCGGCTG
GGGCGCCAAACCGGAAGAATATGATGCCCTGATGAACGAGGCCAATGTCT
ACTTCGATTTCTCGGAGTCTTACAAGGGGACGGGTGCCACGGATAAAACA
GTCATCTTCTCTGCCACCTCAGAGACCAGCTTGTTGGGGCGCGGGGAGTG
GCTCAAGTTTGCAGCTGCTTTTTTCAACCTGGACGGCGTGGCAGAGCAGA
AGTTTGATCGGACCCGGGAGAAGTACTACGAGCTCTCGGATGCCGCCAAG
GCCAATCCGAGCCGCCCCAAAGTGTCTTTCGTGAACGTCGACACGTACGG
TGACAGTACCGTGGATTACTTTATGATCGATGTGGCTGGCTACAAAAGAA
GCGCGGTCCTGGATGCCGGTGGATACATTGCCAATGTGGAAGACTTTGTG
GGCGCCCCTAATGTGAGCTTCCCGAGCACCATGCGGGCCGCCAGATGGGC
CGTGCCGAAGGAAGCcggggcagagagggaggcggccatcaAGGCCTTCG
CCGCCAACCTGAAAGACACGGACATCCTGATCGACGAACGCTActcccct
tccgtcctcTCGCGCGACGAGTCCCTGGCCGCCTACGGTCTCTCTGGTAA
CGACATGGAGTACCCATTCATCGCGCACGGGAAACTCTACCGCGAGGACC
GAACCGGCTCGGCCACAGGCAGCGCCTGGTTCGAATCGGGCGTCTCGCGT
CCCGACATTGTCCTGATGGATTTCATCAAGGTCATCCAGCCTTCCACGCC
TGCCGTTGCCAGCCACGAGCGAGTCTTTCTGCGCGACTTGGCACAGGGAG
AGACCAAGCAGGTTGTGACGGCGGCGGAATGCGAGCGGGGCTACCCCGTA
TGCGGCTTGTCTTTGGCAGACAAGGCTGCCGCCATTTGTCCCAGTGACCA
ATTTAAGACCTGCTCGGACGGCAGCAAGGTCTTTTTgaccccctcctcgg
acTGCACGCGCTTCCAGGCCTGTCCCATGCGCAGCATGAGCGACTACACC
GGGCTCCCCGCTTCGTCCAACATCATCTTGGCCGTGTTTATGTCTTTCGT
CGGCCTCGTTCTGATTGCGGCAGGCTTCTACtttggaaggaaaaaggcac
GCACCACGAGCCCCGGAGGCTTGACTCCCAATGGGAATGCTGCCACCTTG
CATTAG

Coding sequence (CDS) from alignment at CM002471.1:499548..501203+

>rna7405 ID=rna7405|Name=rna7405|organism=Nannochloropsis gaditana|type=CDS|length=1656bp|location=Sequence derived from alignment at CM002471.1:499548..501203+ (Nannochloropsis gaditana)
ATGCATCGTGTTGCCTTCGGCGCAATGGCCTTGGCGAGCCTATCCGCCTA
CACAAGTGCAGGATCCGTGGAGGAGTGCCTCGCACCCGCGACATTCAGTG
CATCCAAAGACTATTTCCCTTCCGCGGCCGGTGCCACCGTCGATGAAGCC
CGTAAGTTTACTATTGAATACGATCAGGGGTACAAAGTGGTGACCAACAA
GGCAGGCAAGCGACAGTACGTGCTCTATCGGTGCGGAGCCCCCGAGCCGG
ATGTCAGCGCTCTGACCCTCCCTGCCGGCTATGAGCGCCGCATCCTTTCC
GTGCCCGCCCAGAAAGCTGTAACGGCTGAAACTGTCAGCTACGACTTTCT
GAACCTCCTTCAGAACGACAAGACGGACATGGGCGTGACCGATCGTCTCA
TCTCGCTTTCTCCGTACTCCGTGGATGCCTGTGCTCAAAAAGCTCTGACC
TGCAGCAACAATGTCATGTCCCCTGGTTTGAATGCAGCGGTGCCCGGCTG
GGGCGCCAAACCGGAAGAATATGATGCCCTGATGAACGAGGCCAATGTCT
ACTTCGATTTCTCGGAGTCTTACAAGGGGACGGGTGCCACGGATAAAACA
GTCATCTTCTCTGCCACCTCAGAGACCAGCTTGTTGGGGCGCGGGGAGTG
GCTCAAGTTTGCAGCTGCTTTTTTCAACCTGGACGGCGTGGCAGAGCAGA
AGTTTGATCGGACCCGGGAGAAGTACTACGAGCTCTCGGATGCCGCCAAG
GCCAATCCGAGCCGCCCCAAAGTGTCTTTCGTGAACGTCGACACGTACGG
TGACAGTACCGTGGATTACTTTATGATCGATGTGGCTGGCTACAAAAGAA
GCGCGGTCCTGGATGCCGGTGGATACATTGCCAATGTGGAAGACTTTGTG
GGCGCCCCTAATGTGAGCTTCCCGAGCACCATGCGGGCCGCCAGATGGGC
CGTGCCGAAGGAAGCcggggcagagagggaggcggccatcaAGGCCTTCG
CCGCCAACCTGAAAGACACGGACATCCTGATCGACGAACGCTActcccct
tccgtcctcTCGCGCGACGAGTCCCTGGCCGCCTACGGTCTCTCTGGTAA
CGACATGGAGTACCCATTCATCGCGCACGGGAAACTCTACCGCGAGGACC
GAACCGGCTCGGCCACAGGCAGCGCCTGGTTCGAATCGGGCGTCTCGCGT
CCCGACATTGTCCTGATGGATTTCATCAAGGTCATCCAGCCTTCCACGCC
TGCCGTTGCCAGCCACGAGCGAGTCTTTCTGCGCGACTTGGCACAGGGAG
AGACCAAGCAGGTTGTGACGGCGGCGGAATGCGAGCGGGGCTACCCCGTA
TGCGGCTTGTCTTTGGCAGACAAGGCTGCCGCCATTTGTCCCAGTGACCA
ATTTAAGACCTGCTCGGACGGCAGCAAGGTCTTTTTgaccccctcctcgg
acTGCACGCGCTTCCAGGCCTGTCCCATGCGCAGCATGAGCGACTACACC
GGGCTCCCCGCTTCGTCCAACATCATCTTGGCCGTGTTTATGTCTTTCGT
CGGCCTCGTTCTGATTGCGGCAGGCTTCTACtttggaaggaaaaaggcac
GCACCACGAGCCCCGGAGGCTTGACTCCCAATGGGAATGCTGCCACCTTG
CATTAG

Synonyms

Publications