rna7398, rna7398 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7398
Unique Name	rna7398
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3418
Alignment location	CM002471.1:484219..485913 +

Link to JBrowse

Properties


Property Name	Value
Product	branched-chain amino acid aminotransferase
Orig transcript id	gnl\|cribi\|Naga_100158g12.7778.mrna
Orig protein id	gnl\|cribi\|Naga_100158g12.7778
Gene	BCAT1
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:484219..485913 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
BCAT1	gene7157	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7398	rna7398-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23282.1	cds7381	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:484219..485913+
coding sequence from alignment at CM002471.1:484219..485913+

mRNA sequence

>rna7398 ID=rna7398|Name=rna7398|organism=Nannochloropsis gaditana|type=mRNA|length=3418bp
CGTGTACGTGTTGACCAGGTGCTGGTGGGAGTTAGCCGGCATGTCTGTGC
ATTGCATGCACGGGAGCACGTGTGACTCGTCGCCGTGGGATTTTCGTGTG
TCCATTGAGATTGTGAGATCGTGCTGTGCCGGGGCAAATCTGTGCTCTGC
AATTCAGCCCTCAAGTTCAGCCCTCTCAGGACGTGTCTGCTCGCTTTCTG
ATCGCACGCATTATGATAAAACAGGCACTCCTGCATCATAGAAAAGGACG
CAGCGTGAACGGCGGGAAAGCAGCAGTGCAGGTGGGCCTTTGTTGTCCTG
GAAAAAAGGGTAGCCCGAGCATTGGATCGGAGGGAGCGCATGCTATAAGC
TTTTGGCTTCTCAGTGTCGCTTTCCGTCGAAGTGCACGGTGCTCCGCCTC
TTGGTAGTAGCGTCCATTCTTCCACACAAGTTGCAAGCGCCGTCGTGCAA
TGAGAGGGCAGTTTGAGGGGCTAAAAAAGACGCCAGTATCACCATCCGTC
ATTGACTGTCCTTGCCCGTCTCGTACTTGCACCTCTAGCACCAAGGCCAG
CCGGAGCAGTAGCAGCCGCTACCGGTCAAATTATTTCTGTGCATTAGTCC
TTTTTGTTTGCATAAACGTCATCGGCGCGACCCCTGTGGCTCCCCCCCCC
TCGTTCTGGCCAGTCCGAGGTGGCGCTACGACCTCTCTGACCTCCGCCAA
GACGGTTGCCAGCAGTCCCAGCCCAGGCACGGGGAGCAGCAACATAAATA
CATCGAACAAGAGTAGGCGACCGCCAGCGTCCGCCATCTCCACCACCAGC
ATGCTTGAGACTGACGAAAGCCCCTCCTTGCTCTCCGCGCCTCCAAAGCC
GGGCCCTTCACCCTCCACGGCGGCCAACAGCACCACTGCCGCCTCCTCGG
GGCCCATCCTCTTCGGCGACCGCATCCTCCTATCTCCCAGTCGAAGGAGA
GAGACCGCATCTGCCTCCGGTGGGGCCATGCCTGCCTCGTTTTCGCGCGT
CCCTACCGGCACCGGCCGCCCCGGTCGATCCCCGAAACCCCCCAGTTCGC
CCCTCCCGCCCCCAGCCTCCGCCCCCTCTCCCCCTTCCAGCACAGTCGCG
TCTCCTTCCCACTCTCTGCACCACTCGCATCGGAAGCATGTGCCTGTTGG
AGAAGAGGAAGAGGGATCCGTCACTGCCTTGGACCTGGCGATGGCGGACA
TCCAGAAGCCGACGCCCGTCTTGCTGGCGGAGGGCCCGGCCTTTGTCTTC
GAATTCATCTCACAGTGCGAGCTGCCCACCGACCGAGGTCTCTTCCACCT
CCGCGCCTACCGGTACACGCACAAGACGGGTCGCCGGCAAGTGGTGGAGC
CCGTGGTCCTCTTCCAAGGAGAGCACCGGGGGGGGAAGCAGGTCTGGGTG
CGTGTCCATGACCAGTGCCTGACCTCGGAGGTGTTGGGGTCGCGCCGGTG
CGATTGCAAGGAGCAGCTTGAAATGGCGCTGGACCGCATTGTCGGGAACG
GGTCGGAGGGCGGGCTGGTGATTTATTTGCCACAGGAGGGGCGCGGGATC
GGCCTGGCCAACAAGGTGGCGGCTTACGCGCTGCAAGAACAAGGTCTGGA
CACGGTGGATGCGAACTTGTTCCTGGGTTTTGGGGACGACGAACGCACCT
ACGACTACGTCTCCTTCATCCTGCAAGACCTGGGGATCGAGTCCATCCGC
TTGGCCACCAACAACCCTTTCAAGACGAGGTCCCTCAGGGCTGCTGGGGT
CCAGGTCGACGGCGTGGATGGTCTGCAGCCCTCCGCCAACCGGCACAATC
TACACTACCTCCGGACGAAAATTCTGAAAATGGAGCACGCCATGGAGCTG
AGGCTGGGAGGGGGGGAAGGCCGGGAGGGCGAGAGGGAGGAAGGTGGTAG
CCTGGATGGTACCGAGGCGGCCACGACGCCGGAGGTATTGACCGAATCGG
ATCGGAATTCCTTGAGTTCCGAGAAGGAGAGGATTTTGGACCAGGAGGGA
TTGGAGGAGGAGCTGGAGGAGGAGAGGGAGGAAGGAGGACGGAGAGGGAA
TGGGGAGGGATCGGTGGAGGACAAGGTTGGCGCGGGGGTGTCGGCGGGGA
CCCTGGCGAGGTCGGAGGGCCCACAGACCGGCGAAGCAGGAGAGAAGGCA
GCGAAAGCTGCCGCGGCAGCCGCGGCAGCAGCAGCGGAGGCGGAAAAGAA
GCTTCAAGCGCCGGGATATTGTTTTGGGAAAGCCACGGTGGAGGCGGCCA
TCAATGCGGTGGCGGCGGGGAAGATGGTAGTGGTGGTGGACGACGAGGAC
CGGGAGAACGAGGGGGATATCATTATGGCGGCCGACAAGGTGACCACGGA
GGCGATGGCATTCATTGTCCGGCATTGCTCGGGCGTGGTCTGTGTCTCCT
TGGAAGGGGAGGACTTGGACCGGCTGGCCTTGCCCCCCATGATCGCGGAA
AACGAGGACCCCAAGCACACCGCCTTCACCGTCTCGGTCGACTACAAGCA
CAACACGACCACAGGCATCTCCGCACACGACCGGGCTGCCACCCTGCGCG
CCTTGGCGGACCCAGCCTCGCGCGCCTCTGATTTCACCCGGCCAGGGCAC
ATTTTCCCCTTGCGCTACTCCCCGGGGGGGGTCAGGAACCGCCGCGGACA
CACCGAGGCGGCCTTGGACCTCTCCAAGCTGGCGGGGAGGCGCCCTGTGG
GGGTCCTCTGCGAGATTTGCAGCGAGGATGGGAGCATGGCCCGGCTTCCC
GAGCTGAGGGAGTTCTGCGCCCGACACAATCTGGTCCTGACCAGCATTGC
CGATCTGGTGGCTTACCGGGTGGAACACGAAGGGAGCTGACGGGGATACA
GAGGGATCGACAGTAAATTTGTAGGGATAGATCAATGTTACAGCAGCCGC
GTTAGCACCATGGAGGTCGCTCCCGGGCCGGAAGGAAGAGGCCGCTCGAG
AGGGAAGGCGAAGAGTTTACAGAGAGCCTGGACGATCCATTTATGTGTGG
AAGACTGGGGTGTGGAGGCGGCCAGGGCCCCAAATGGATCCACACGAGAA
AATTTCACGTCCATGGCGCAGCCAGGGGGCCGAAGGGGGCTTTTGGAATG
GCCGAGTAACCAAGGCGGAGGCGTCTGGCATGCTTGTTGCTTGCTGCGTG
TGGGGGGCGAGTGTGGCGTGGGTGGGAAGGCAGGTGGGCCGGGCAAAGGC
CAGGAGACAGGGGGTAAGATGAGGAAGCCTGGTGGCCACGAGGTTATCGA
GGCCCATGCGCGGATCGAACACCTGTGGAGTGAGTCCAAGCGCCAAGCAA
ACGCGAGGCAGTGAGTGAGCCTCCAGGCGGGAAACGAGTAGCAGCAACAG
CGGCACGACGATGTGACGAAAATTCATTGGAAAGAAAAAGAAAGAATTCA
AATTGGATGGATCTTTCG

protein sequence of rna7398

>rna7398-protein ID=rna7398-protein|Name=rna7398|organism=Nannochloropsis gaditana|type=polypeptide|length=416bp
MARRRLHGPALHSSVFLLFSLLPTSSAFLTPCRPALQSQHQLSHPAALST
PSPFCDRQHDGRLPLSLSATTMAHRAPGTANLDWANLGFEFRQTRSHIKF
VWKNGEWSEGELVADPYVKVHIANTGLHYGQAIFEGLKAFAWQDGSIRIF
RPQENAKRLRMSAERLLMTAFPEDKFVEAVRRVVADNADYVPPFGTGGSL
YIRPLLFGSGPRIGLNPSDEYTLLIMPIPVGDYYKGGLSPVSALVIDDYD
RAAPRGVGHVKVAGNYAADLLPNLLGKKKGYPIGLYLDAKTNSFVEEFST
SNFVAIDSSGAFVTPRSPTVLPSITNKSLMDLARDEGLAVQERAIPITEV
KTLREVAACGTAVVVTPVNRVVYRDEVIKIGGEDGGTGPVTAKLYSRVRA
IQQGEAEDKFSWTVKV

mRNA from alignment at CM002471.1:484219..485913+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7398 ID=rna7398|Name=rna7398|organism=Nannochloropsis gaditana|type=mRNA|length=1695bp|location=Sequence derived from alignment at CM002471.1:484219..485913+ (Nannochloropsis gaditana)
TTCCTATGGCGTGGCCCGGCGACAGTCTAGCCAACAAACAAGGCCAAAGT
AAAACGAGTCATCCCGATTGTATTACCATAGTGTGGGTGGGGTCAGCGTG
TCATGTCGATGTTTTTTGGGGCAGTGTCTTGACTTCATGTTGCCATACTT
TACCCTTCTGGCCCTCATCGTTGGCTGGGCTCTACTTGGGATCAAGCTAG
GAgcctccagcctcccctcaACCCCTCTCTTGCTCTGACCTTGTGCGAAA
AAAAACATAAGGCAACACAGTACACCATGGCCAGAAGAAGATTACATGGA
CCTGCGCTGCATTCAAGTGTCTTCTTGCTgttttccctgcttcccacATC
TAGCGCGTTCCTCACCCCTTGCCGTCCGGCCCTCCAGTCCCAACACCAAC
TCTCCCACCCCGCAGCACTTTCCACACCGTCTCCCTTTTGTGACCGCCAA
CATGATGGACGGctacctctttctctttctgcGACTACGATGGCGCATCG
AGCTCCAGGGACTGCTAACTTAGATTGGGCCAACTTGGGCTTTGAATTCA
GGCAGACAAGGAGTCACATAAAGTTTGTTTGGAAAAATGGTGAATGGTCG
GAAGGTGAACTGGTGGCCGATCCGTACGTGAAAGTTCATATTGCTAACAC
AGGCTTACATTACGGGCAAGCTATCTTTGAAGGGCTGAAGGCATTTGCCT
GGCAAGACGGCTCCATTCGCATATTCCGTCCGCAGGAGAATGCCAAGCGC
CTCCGTATGTCAGCTGAGCGGCTCTTGATGACCGCCTTTCCCGAGGACAA
ATTCGTGGAAGCGGTCAGACGCGTGGTGGCAGATAATGCAGACTACGTTC
CCCCCTTTGGCACAGGGGGCTCACTCTAcatccgccccctcctctttggg
aGCGGGCCGCGCATCGGCCTCAATCCCTCCGACGAATACACCCTCTTGAT
CATGCCCATTCCCGTAGGCGACTACTACAAGGGCGGTCTGTCCCCCGTCT
CGGCCCTGGTCATCGACGATTACGACAGGGCAGCTCCCCGGGGCGTCGGC
CACGTGAAGGTGGCGGGAAACTATGCGGCAGACCTGCTCCCGAATTTgct
ggggaagaagaagggctaCCCCATCGGCTTGTACCTCGATGCTAAGACGA
ACAGCTTTGTGGAGGAgttttccacctccaacTTCGTTGCCATCGACTCG
TCAGGCGCCTTTGTCACGCCTCGATCTCCCACGGTCCTACCCTCCATCAC
GAACAAATCGCTCATGGACTTGGCGCGCGATGAGGGGCTGGCGGTGCAGG
AGAGAGCGATACCCATAACAGAGGTGAAGACCCTGCGCGAGGTAGCCGCA
TGTGGGACTGCCGTGGTGGTGACGCCTGTAAACCGGGTCGTCTACAGGGA
TGAGGTAATTAAAatcgggggagaagacgggggaACGGGGCCGGTCACAG
CGAAGCTCTACAGTAGGGTGCGTGCCATAcagcaaggggaagcggaagaT
AAGTTCAGTTGGACGGTAAAGGTGTGAGGGCCTCCCGCGAACGGTATGAA
AACGCAGTCGAGGGTCATCCTCATGTTTGAGGGGGAGtaggggccaggga
gagtcatggagggagagcgttAATGGAATTGTCGAGCTTTTATATTAATG
AGAGGGATGACAAAGTATGATAAAGGCGATTTCAGAATGGTTTGT

Coding sequence (CDS) from alignment at CM002471.1:484219..485913+

>rna7398 ID=rna7398|Name=rna7398|organism=Nannochloropsis gaditana|type=CDS|length=1251bp|location=Sequence derived from alignment at CM002471.1:484219..485913+ (Nannochloropsis gaditana)
ATGGCCAGAAGAAGATTACATGGACCTGCGCTGCATTCAAGTGTCTTCTT
GCTgttttccctgcttcccacATCTAGCGCGTTCCTCACCCCTTGCCGTC
CGGCCCTCCAGTCCCAACACCAACTCTCCCACCCCGCAGCACTTTCCACA
CCGTCTCCCTTTTGTGACCGCCAACATGATGGACGGctacctctttctct
ttctgcGACTACGATGGCGCATCGAGCTCCAGGGACTGCTAACTTAGATT
GGGCCAACTTGGGCTTTGAATTCAGGCAGACAAGGAGTCACATAAAGTTT
GTTTGGAAAAATGGTGAATGGTCGGAAGGTGAACTGGTGGCCGATCCGTA
CGTGAAAGTTCATATTGCTAACACAGGCTTACATTACGGGCAAGCTATCT
TTGAAGGGCTGAAGGCATTTGCCTGGCAAGACGGCTCCATTCGCATATTC
CGTCCGCAGGAGAATGCCAAGCGCCTCCGTATGTCAGCTGAGCGGCTCTT
GATGACCGCCTTTCCCGAGGACAAATTCGTGGAAGCGGTCAGACGCGTGG
TGGCAGATAATGCAGACTACGTTCCCCCCTTTGGCACAGGGGGCTCACTC
TAcatccgccccctcctctttgggaGCGGGCCGCGCATCGGCCTCAATCC
CTCCGACGAATACACCCTCTTGATCATGCCCATTCCCGTAGGCGACTACT
ACAAGGGCGGTCTGTCCCCCGTCTCGGCCCTGGTCATCGACGATTACGAC
AGGGCAGCTCCCCGGGGCGTCGGCCACGTGAAGGTGGCGGGAAACTATGC
GGCAGACCTGCTCCCGAATTTgctggggaagaagaagggctaCCCCATCG
GCTTGTACCTCGATGCTAAGACGAACAGCTTTGTGGAGGAgttttccacc
tccaacTTCGTTGCCATCGACTCGTCAGGCGCCTTTGTCACGCCTCGATC
TCCCACGGTCCTACCCTCCATCACGAACAAATCGCTCATGGACTTGGCGC
GCGATGAGGGGCTGGCGGTGCAGGAGAGAGCGATACCCATAACAGAGGTG
AAGACCCTGCGCGAGGTAGCCGCATGTGGGACTGCCGTGGTGGTGACGCC
TGTAAACCGGGTCGTCTACAGGGATGAGGTAATTAAAatcgggggagaag
acgggggaACGGGGCCGGTCACAGCGAAGCTCTACAGTAGGGTGCGTGCC
ATAcagcaaggggaagcggaagaTAAGTTCAGTTGGACGGTAAAGGTGTG
A

Synonyms

Publications