rna7397, rna7397 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7397
Unique Name	rna7397
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	818
Alignment location	CM002471.1:480542..483959 -

Link to JBrowse

Properties


Property Name	Value
Product	gtp cyclohydrolase
Orig transcript id	gnl\|cribi\|Naga_100158g13.7784.mrna
Orig protein id	gnl\|cribi\|Naga_100158g13.7784
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:480542..483959 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100158g13	gene7156	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23288.1	cds7380	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7397	rna7397-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:480542..483959-
coding sequence from alignment at CM002471.1:480542..483959-

mRNA sequence

>rna7397 ID=rna7397|Name=rna7397|organism=Nannochloropsis gaditana|type=mRNA|length=818bp
CGTCAACAAATCTTATTTCAAGCGCAGTCCTCATTACAGGCATCACAACA
GCCTCGTTCACCAGCGCTTTGGAGGTGAACCCTTCGGTGACAAATTTTGG
CTGAAACCCGACGCGGCGGGAGGGGTTCCCACACGCAGGGCTTGCGGGTT
CAGATATATATTGCGGCGCACAAGAAAGCAGGCATCATTCGCTCTGGTAG
CAGCTTTGTTGGTTGAGGATTGTTGAATACACATCATTACCCACATGCCC
AAGTCTTGTAAGGAAGCTGCCTATGCCCTATTGGCCTGCATGCAGCAGCA
GCCCTGTATGAAGACGGGAGGTTCCCTGACCGAATGCCTGAAAAGCGAGG
ACGTGGATGCTTGCTCGGTGCAACGCAATGCGTATTTCCTCTGCAAACGC
TCGCAGCTGGACATGCGAACTCGTATAAGAGGCACGCGCGTCTACTAGAG
GCACCCGCGTCTACTTGGTCGCTCGACAAGCCAGTCTCCAGCCCTCTAAT
CGATAAGTGAGGTTGAAAAAGGAGGGTTGTTTACGAAAGGAAAAAGCTTT
GGAAAGGGGAAAGAAAAGTACGGCTGTCCGACGTTCAGAGATACCTCTCT
TTTCCTGCGAAAGATCCATCCAATTTGAATTCTTTCTTTTTCTTTCCAAT
GAATTTTCGTCACATCGTCGTGCCGCTGTTGCTGCTACTCGTTTCCCGCC
TGGAGGCTCACTCACTGCCTCGCGTTTGCTTGGCGCTTGGACTCACTCCA
CAGGTGTTCGATCCGCGCATGGGCCTCGATAACCTCGTGGCCACCAGGCT
TCCTCATCTTACCCCCTG

protein sequence of rna7397

>rna7397-protein ID=rna7397-protein|Name=rna7397|organism=Nannochloropsis gaditana|type=polypeptide|length=796bp
MRGQFEGLKKTPVSPSVIDCPCPSRTCTSSTKASRSSSSRYRSNYFCALV
LFVCINVIGATPVAPPPSFWPVRGGATTSLTSAKTVASSPSPGTGSSNIN
TSNKSRRPPASAISTTSMLETDESPSLLSAPPKPGPSPSTAANSTTAASS
GPILFGDRILLSPSRRRETASASGGAMPASFSRVPTGTGRPGRSPKPPSS
PLPPPASAPSPPSSTVASPSHSLHHSHRKHVPVGEEEEGSVTALDLAMAD
IQKPTPVLLAEGPAFVFEFISQCELPTDRGLFHLRAYRYTHKTGRRQVVE
PVVLFQGEHRGGKQVWVRVHDQCLTSEVLGSRRCDCKEQLEMALDRIVGN
GSEGGLVIYLPQEGRGIGLANKVAAYALQEQGLDTVDANLFLGFGDDERT
YDYVSFILQDLGIESIRLATNNPFKTRSLRAAGVQVDGVDGLQPSANRHN
LHYLRTKILKMEHAMELRLGGGEGREGEREEGGSLDGTEAATTPEVLTES
DRNSLSSEKERILDQEGLEEELEEEREEGGRRGNGEGSVEDKVGAGVSAG
TLARSEGPQTGEAGEKAAKAAAAAAAAAAEAEKKLQAPGYCFGKATVEAA
INAVAAGKMVVVVDDEDRENEGDIIMAADKVTTEAMAFIVRHCSGVVCVS
LEGEDLDRLALPPMIAENEDPKHTAFTVSVDYKHNTTTGISAHDRAATLR
ALADPASRASDFTRPGHIFPLRYSPGGVRNRRGHTEAALDLSKLAGRRPV
GVLCEICSEDGSMARLPELREFCARHNLVLTSIADLVAYRVEHEGS

mRNA from alignment at CM002471.1:480542..483959-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7397 ID=rna7397|Name=rna7397|organism=Nannochloropsis gaditana|type=mRNA|length=3418bp|location=Sequence derived from alignment at CM002471.1:480542..483959- (Nannochloropsis gaditana)
CGTGTACGTGTTGACCAGGTGCTGGTGGGAGTTAGCCGGCATGTCTGTGC
ATTGCATGCACGGGAGCACGTGTGACTCGTCGCCGTGGGATTTTCGTGTG
TCCATTGAGATTGTGAGATCGTGCTGTGCCGGGGCAAATCTGTGCTCTGC
AATTCAGCCCTCAAGTTCAGCCCTCTCAGGACGTGTCTGCTCGCTTTCTG
ATCGCACGCATTATGATAAAACAGGCACTCCTGCATCATAGAAAAGGACG
CAGCGTGAACGGCGGGAAAGCAGCAGTGCAGGTGGGCCTTTGTTGTCCTG
GAAAAAAGGGTAGCCCGAGCATTGGATCGGAGGGAGCGCATGCTATAAGC
TTTTGGCTTCTCAGTGTCGCTTTCCGTCGAAGTGCACGGTGCTCCGCCTC
TTGGTAGTAGCGTCCATTCTTCCACACAAGTTGCAAGCGCCGTCGTGCAA
TGAGAGGGCAGTTTGAGGGGCTAAAAAAGACGCCAGTATCACCATCCGTC
ATTGACTGTCCTTGCCCGTCTCGTACTTGCACCTCTAGCACCAAGGCCAG
CCGGAGCAGTAGCAGCCGCTACCGGTCAAATTATTTCTGTGCATTAGTCC
TTTTTGTTTGCATAAACGTCATCGGCGCGACCCCTGTGGCTCCCCCCCCC
TCGTTCTGGCCAGTCCGAGGTGGCGCTACGACCTCTCTGACCTCCGCCAA
GACGGTTGCCAGCAGTCCCAGCCCAGGCACGGGGAGCAGCAACATAAATA
CATCGAACAAGAGTAGGCGACCGCCAGCGTCCGCCATCTCCACCACCAGC
ATGCTTGAGACTGACGAAAGCCCCTCCTTGCTCTCCGCGCCTCCAAAGCC
GGGCCCTTCACCCTCCACGGCGGCCAACAGCACCACTGCCGCCTCCTCGG
GGCCCATCCTCTTCGGCGACCGCATCCTCCTATCTCCCAGTCGAAGGAGA
GAGACCGCATCTGCCTCCGGTGGGGCCATGCCTGCCTCGTTTTCGCGCGT
CCCTACCGGCACCGGCCGCCCCGGTCGATCCCCGAAACCCCCCAGTTCGC
CCCTCCCGCCCCCAGCCTCCGCCCCCTCTCCCCCTTCCAGCACAGTCGCG
TCTCCTTCCCACTCTCTGCACCACTCGCATCGGAAGCATGTGCCTGTTGG
AGAAGAGGAAGAGGGATCCGTCACTGCCTTGGACCTGGCGATGGCGGACA
TCCAGAAGCCGACGCCCGTCTTGCTGGCGGAGGGCCCGGCCTTTGTCTTC
GAATTCATCTCACAGTGCGAGCTGCCCACCGACCGAGGTCTCTTCCACCT
CCGCGCCTACCGGTACACGCACAAGACGGGTCGCCGGCAAGTGGTGGAGC
CCGTGGTCCTCTTCCAAGGAGAGCACCGGGGGGGGAAGCAGGTCTGGGTG
CGTGTCCATGACCAGTGCCTGACCTCGGAGGTGTTGGGGTCGCGCCGGTG
CGATTGCAAGGAGCAGCTTGAAATGGCGCTGGACCGCATTGTCGGGAACG
GGTCGGAGGGCGGGCTGGTGATTTATTTGCCACAGGAGGGGCGCGGGATC
GGCCTGGCCAACAAGGTGGCGGCTTACGCGCTGCAAGAACAAGGTCTGGA
CACGGTGGATGCGAACTTGTTCCTGGGTTTTGGGGACGACGAACGCACCT
ACGACTACGTCTCCTTCATCCTGCAAGACCTGGGGATCGAGTCCATCCGC
TTGGCCACCAACAACCCTTTCAAGACGAGGTCCCTCAGGGCTGCTGGGGT
CCAGGTCGACGGCGTGGATGGTCTGCAGCCCTCCGCCAACCGGCACAATC
TACACTACCTCCGGACGAAAATTCTGAAAATGGAGCACGCCATGGAGCTG
AGGCTGGGAGGGGGGGAAGGCCGGGAGGGCGAGAGGGAGGAAGGTGGTAG
CCTGGATGGTACCGAGGCGGCCACGACGCCGGAGGTATTGACCGAATCGG
ATCGGAATTCCTTGAGTTCCGAGAAGGAGAGGATTTTGGACCAGGAGGGA
TTGGAGGAGGAGCTGGAGGAGGAGAGGGAGGAAGGAGGACGGAGAGGGAA
TGGGGAGGGATCGGTGGAGGACAAGGTTGGCGCGGGGGTGTCGGCGGGGA
CCCTGGCGAGGTCGGAGGGCCCACAGACCGGCGAAGCAGGAGAGAAGGCA
GCGAAAGCTGCCGCGGCAGCCGCGGCAGCAGCAGCGGAGGCGGAAAAGAA
GCTTCAAGCGCCGGGATATTGTTTTGGGAAAGCCACGGTGGAGGCGGCCA
TCAATGCGGTGGCGGCGGGGAAGATGGTAGTGGTGGTGGACGACGAGGAC
CGGGAGAACGAGGGGGATATCATTATGGCGGCCGACAAGGTGACCACGGA
GGCGATGGCATTCATTGTCCGGCATTGCTCGGGCGTGGTCTGTGTCTCCT
TGGAAGGGGAGGACTTGGACCGGCTGGCCTTGCCCCCCATGATCGCGGAA
AACGAGGACCCCAAGCACACCGCCTTCACCGTCTCGGTCGACTACAAGCA
CAACACGACCACAGGCATCTCCGCACACGACCGGGCTGCCACCCTGCGCG
CCTTGGCGGACCCAGCCTCGCGCGCCTCTGATTTCACCCGGCCAGGGCAC
ATTTTCCCCTTGCGCTACTCCCCGGGGGGGGTCAGGAACCGCCGCGGACA
CACCGAGGCGGCCTTGGACCTCTCCAAGCTGGCGGGGAGGCGCCCTGTGG
GGGTCCTCTGCGAGATTTGCAGCGAGGATGGGAGCATGGCCCGGCTTCCC
GAGCTGAGGGAGTTCTGCGCCCGACACAATCTGGTCCTGACCAGCATTGC
CGATCTGGTGGCTTACCGGGTGGAACACGAAGGGAGCTGACGGGGATACA
GAGGGATCGACAGTAAATTTGTAGGGATAGATCAATGTTACAGCAGCCGC
GTTAGCACCATGGAGGTCGCTCCCGGGCCGGAAGGAAGAGGCCGCTCGAG
AGGGAAGGCGAAGAGTTTACAGAGAGCCTGGACGATCCATTTATGTGTGG
AAGACTGGGGTGTGGAGGCGGCCAGGGCCCCAAATGGATCCACACGAGAA
AATTTCACGTCCATGGCGCAGCCAGGGGGCCGAAGGGGGCTTTTGGAATG
GCCGAGTAACCAAGGCGGAGGCGTCTGGCATGCTTGTTGCTTGCTGCGTG
TGGGGGGCGAGTGTGGCGTGGGTGGGAAGGCAGGTGGGCCGGGCAAAGGC
CAGGAGACAGGGGGTAAGATGAGGAAGCCTGGTGGCCACGAGGTTATCGA
GGCCCATGCGCGGATCGAACACCTGTGGAGTGAGTCCAAGCGCCAAGCAA
ACGCGAGGCAGTGAGTGAGCCTCCAGGCGGGAAACGAGTAGCAGCAACAG
CGGCACGACGATGTGACGAAAATTCATTGGAAAGAAAAAGAAAGAATTCA
AATTGGATGGATCTTTCG

Coding sequence (CDS) from alignment at CM002471.1:480542..483959-

>rna7397 ID=rna7397|Name=rna7397|organism=Nannochloropsis gaditana|type=CDS|length=2391bp|location=Sequence derived from alignment at CM002471.1:480542..483959- (Nannochloropsis gaditana)
ATGAGAGGGCAGTTTGAGGGGCTAAAAAAGACGCCAGTATCACCATCCGT
CATTGACTGTCCTTGCCCGTCTCGTACTTGCACCTCTAGCACCAAGGCCA
GCCGGAGCAGTAGCAGCCGCTACCGGTCAAATTATTTCTGTGCATTAGTC
CTTTTTGTTTGCATAAACGTCATCGGCGCGACCCCTGTGGCTCCCCCCCC
CTCGTTCTGGCCAGTCCGAGGTGGCGCTACGACCTCTCTGACCTCCGCCA
AGACGGTTGCCAGCAGTCCCAGCCCAGGCACGGGGAGCAGCAACATAAAT
ACATCGAACAAGAGTAGGCGACCGCCAGCGTCCGCCATCTCCACCACCAG
CATGCTTGAGACTGACGAAAGCCCCTCCTTGCTCTCCGCGCCTCCAAAGC
CGGGCCCTTCACCCTCCACGGCGGCCAACAGCACCACTGCCGCCTCCTCG
GGGCCCATCCTCTTCGGCGACCGCATCCTCCTATCTCCCAGTCGAAGGAG
AGAGACCGCATCTGCCTCCGGTGGGGCCATGCCTGCCTCGTTTTCGCGCG
TCCCTACCGGCACCGGCCGCCCCGGTCGATCCCCGAAACCCCCCAGTTCG
CCCCTCCCGCCCCCAGCCTCCGCCCCCTCTCCCCCTTCCAGCACAGTCGC
GTCTCCTTCCCACTCTCTGCACCACTCGCATCGGAAGCATGTGCCTGTTG
GAGAAGAGGAAGAGGGATCCGTCACTGCCTTGGACCTGGCGATGGCGGAC
ATCCAGAAGCCGACGCCCGTCTTGCTGGCGGAGGGCCCGGCCTTTGTCTT
CGAATTCATCTCACAGTGCGAGCTGCCCACCGACCGAGGTCTCTTCCACC
TCCGCGCCTACCGGTACACGCACAAGACGGGTCGCCGGCAAGTGGTGGAG
CCCGTGGTCCTCTTCCAAGGAGAGCACCGGGGGGGGAAGCAGGTCTGGGT
GCGTGTCCATGACCAGTGCCTGACCTCGGAGGTGTTGGGGTCGCGCCGGT
GCGATTGCAAGGAGCAGCTTGAAATGGCGCTGGACCGCATTGTCGGGAAC
GGGTCGGAGGGCGGGCTGGTGATTTATTTGCCACAGGAGGGGCGCGGGAT
CGGCCTGGCCAACAAGGTGGCGGCTTACGCGCTGCAAGAACAAGGTCTGG
ACACGGTGGATGCGAACTTGTTCCTGGGTTTTGGGGACGACGAACGCACC
TACGACTACGTCTCCTTCATCCTGCAAGACCTGGGGATCGAGTCCATCCG
CTTGGCCACCAACAACCCTTTCAAGACGAGGTCCCTCAGGGCTGCTGGGG
TCCAGGTCGACGGCGTGGATGGTCTGCAGCCCTCCGCCAACCGGCACAAT
CTACACTACCTCCGGACGAAAATTCTGAAAATGGAGCACGCCATGGAGCT
GAGGCTGGGAGGGGGGGAAGGCCGGGAGGGCGAGAGGGAGGAAGGTGGTA
GCCTGGATGGTACCGAGGCGGCCACGACGCCGGAGGTATTGACCGAATCG
GATCGGAATTCCTTGAGTTCCGAGAAGGAGAGGATTTTGGACCAGGAGGG
ATTGGAGGAGGAGCTGGAGGAGGAGAGGGAGGAAGGAGGACGGAGAGGGA
ATGGGGAGGGATCGGTGGAGGACAAGGTTGGCGCGGGGGTGTCGGCGGGG
ACCCTGGCGAGGTCGGAGGGCCCACAGACCGGCGAAGCAGGAGAGAAGGC
AGCGAAAGCTGCCGCGGCAGCCGCGGCAGCAGCAGCGGAGGCGGAAAAGA
AGCTTCAAGCGCCGGGATATTGTTTTGGGAAAGCCACGGTGGAGGCGGCC
ATCAATGCGGTGGCGGCGGGGAAGATGGTAGTGGTGGTGGACGACGAGGA
CCGGGAGAACGAGGGGGATATCATTATGGCGGCCGACAAGGTGACCACGG
AGGCGATGGCATTCATTGTCCGGCATTGCTCGGGCGTGGTCTGTGTCTCC
TTGGAAGGGGAGGACTTGGACCGGCTGGCCTTGCCCCCCATGATCGCGGA
AAACGAGGACCCCAAGCACACCGCCTTCACCGTCTCGGTCGACTACAAGC
ACAACACGACCACAGGCATCTCCGCACACGACCGGGCTGCCACCCTGCGC
GCCTTGGCGGACCCAGCCTCGCGCGCCTCTGATTTCACCCGGCCAGGGCA
CATTTTCCCCTTGCGCTACTCCCCGGGGGGGGTCAGGAACCGCCGCGGAC
ACACCGAGGCGGCCTTGGACCTCTCCAAGCTGGCGGGGAGGCGCCCTGTG
GGGGTCCTCTGCGAGATTTGCAGCGAGGATGGGAGCATGGCCCGGCTTCC
CGAGCTGAGGGAGTTCTGCGCCCGACACAATCTGGTCCTGACCAGCATTG
CCGATCTGGTGGCTTACCGGGTGGAACACGAAGGGAGCTGA

Synonyms

Publications