rna7393, rna7393 (mRNA) Nannochloropsis gaditana

Overview
Namerna7393
Unique Namerna7393
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length216
Alignment locationCM002471.1:475429..475906 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100158g18.7787.mrna
Orig protein idgnl|cribi|Naga_100158g18.7787
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:475429..475906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100158g18gene7152Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7393rna7393-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23291.1cds7376Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7393 ID=rna7393|Name=rna7393|organism=Nannochloropsis gaditana|type=mRNA|length=216bp
ATGAAGGGGTTGCATGGTGAAAAAATGACAGGTGATCGATGGATCGCGCG
CGCGTCCTTCCTTCAGACTGTCAGCAATTGGAACCGCATGATGAGAGTAC
TTGAGGATGGCCAAGATGCATTTTATCAACATACCGCCGTTTTACCTGGT
CTATTTCTGCGTCTGCTCGGGCTCCGCCTGGGTTGCCTCGTAGATGAGAA
GAACTTTGTTGTCTGA
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protein sequence of rna7393

>rna7393-protein ID=rna7393-protein|Name=rna7393|organism=Nannochloropsis gaditana|type=polypeptide|length=95bp
MSASFLEKSDDSHIADSRCERIVLWHRSLSVRDHTASLQSSLIFFEETRY
AARFYDCPQLCQAFLEVLAQLWCQDGVKPRGTTPVIWSIALPNSV
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mRNA from alignment at CM002471.1:475429..475906+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7393 ID=rna7393|Name=rna7393|organism=Nannochloropsis gaditana|type=mRNA|length=478bp|location=Sequence derived from alignment at CM002471.1:475429..475906+ (Nannochloropsis gaditana)
ATGTCTGCATCCTTTCTAGGTAAGGCGGGTCCAGGAGATAGGTCACAAGA
CCTTTTGTTAGAGGCTGCGCTTTTCCTTTGTGATACCACGGTTTCCTCAG
CCTACTGCGTGCGTAGAGAAAAGTGATGACAGTCATATAGCTGACTCAAG
ATGTGAGAGAATTGTGCTGTGGCACAGGTCTCTCTCAGTGCGAGATCATA
CAGCTAGCCTTCAAAGTTCCCTGATTTTTTTCGAGGAGACGCGATACGTC
GATTGAATAACGTGGGTTTACATATGTGATCATGTCTGTGCCTCAAAGTG
TTAGCGACGTAACTTGTCATCTTCGTCTTACGTGGCACAGGCAGCGCGGT
TCTACGACTGTCCACAGCTTTGCCAAGCATTCTTGGAGGTATTGGCGCAG
CTATGGTGTCAAGATGGTGTTAAACCGCGTGGAACAACACCCGTAATCTG
GTCAATTGCTCTTCCGAACTCTGTATAA
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Coding sequence (CDS) from alignment at CM002471.1:475429..475906+

>rna7393 ID=rna7393|Name=rna7393|organism=Nannochloropsis gaditana|type=CDS|length=864bp|location=Sequence derived from alignment at CM002471.1:475429..475906+ (Nannochloropsis gaditana)
ATGTCTGCATCCTTTCTAGAGAAAAGTGATGACAGTCATATAGCTGACTC
AAGATGTGAGAGAATTGTGCTGTGGCACAGGTCTCTCTCAGTGCGAGATC
ATACAGCTAGCCTTCAAAGTTCCCTGATTTTTTTCGAGGAGACGCGATAC
GCAGCGCGGTTCTACGACTGTCCACAGCTTTGCCAAGCATTCTTGGAGGT
ATTGGCGCAGCTATGGTGTCAAGATGGTGTTAAACCGCGTGGAACAACAC
CCGTAATCTGGTCAATTGCTCTTCCGAACTCTGTATAAATGTCTGCATCC
TTTCTAGAGAAAAGTGATGACAGTCATATAGCTGACTCAAGATGTGAGAG
AATTGTGCTGTGGCACAGGTCTCTCTCAGTGCGAGATCATACAGCTAGCC
TTCAAAGTTCCCTGATTTTTTTCGAGGAGACGCGATACGCAGCGCGGTTC
TACGACTGTCCACAGCTTTGCCAAGCATTCTTGGAGGTATTGGCGCAGCT
ATGGTGTCAAGATGGTGTTAAACCGCGTGGAACAACACCCGTAATCTGGT
CAATTGCTCTTCCGAACTCTGTATAAATGTCTGCATCCTTTCTAGAGAAA
AGTGATGACAGTCATATAGCTGACTCAAGATGTGAGAGAATTGTGCTGTG
GCACAGGTCTCTCTCAGTGCGAGATCATACAGCTAGCCTTCAAAGTTCCC
TGATTTTTTTCGAGGAGACGCGATACGCAGCGCGGTTCTACGACTGTCCA
CAGCTTTGCCAAGCATTCTTGGAGGTATTGGCGCAGCTATGGTGTCAAGA
TGGTGTTAAACCGCGTGGAACAACACCCGTAATCTGGTCAATTGCTCTTC
CGAACTCTGTATAA
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Synonyms
Publications