rna7392, rna7392 (mRNA) Nannochloropsis gaditana

Overview
Namerna7392
Unique Namerna7392
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2175
Alignment locationCM002471.1:475027..475303 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100158g19.7795.mrna
Orig protein idgnl|cribi|Naga_100158g19.7795
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:475027..475303 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100158g19gene7151Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7392rna7392-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23299.1cds7375Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7392 ID=rna7392|Name=rna7392|organism=Nannochloropsis gaditana|type=mRNA|length=2175bp
CAGCCTCTAACAAAAGGTCTTGTGACCTATCTCCTGGACCCGCCTTACCT
AGAAAGGATGCAGACATCACCGGCGCGTGTCGCCCGCGCTCGAGGACCCT
GTGACGATGCGCATGGGGAGTAAAAACTCTCAGTATCGAACGGATCCATC
TTCTGTGTCATTCACGAGGACAAGAAGGTGGGTGGGAGGGGCTCAGACAA
CAAAGTTCTTCTCATCTACGAGGCAACCCAGGCGGAGCCCGAGCAGACGC
AGAAATAGACCAGGTAAAACGGCGGTATGTTGATAAAATGCATCTTGGCC
ATCCTCAAGTACTAAGAAACTGGTTTGTACCGTTCATGTACTCCCCTTTC
GACGTCAACCTCGTGCACTCACCTCTCATCATGCGGTTCCAATTGCTGAC
AGTCTGAAGGAAGGACGCGCGCGCGATCCATCGATCACCTGTCATTTTTT
CACCATGCAACCCCTTCATCCCCGCGTACAAATGACTTCATGCCCATGCA
ATCGCCACTCGTGCGCCAAGTGGCATTTGATTTCGTGCCCTCCTTCCCGC
CCGTCGATCATTGGCAAGCAAAAAGGATCTGCAAGCATGAGAGAAAGAGG
GCTCAAGGCGTGCAGCCTCGATTCGGCTCCAAATTGGATAATTGCTACAT
GTCCTCTATTTCCAGGCTTTCAGAAAGGAATCCTTACCGCCATCAAGCCT
CGTCCATTCATGCTTGCCATACGTGACATCCCATGCAGCGTCATGCGAAG
CATCGACCGCGTGAAGGGGGGAGGTCATCGAATACGGATGCCGGAGTTCT
CCTGATGAGATCCTTGCTGGAGCGAATAAAACAATGTTATGTACATCGAG
CAAGCATGTTCACCCGGAATTTCGATGCGCATGCATCAGATACGACATCA
AAGTCCTCATGTGCACTTTTGATCAAGCAAAACAGCAGCACTTACGAAGC
GAATGTCTTTTTTTTTTAAAGTCACTACATACACGTCATATAGCAGCGCG
CTTCAATCACGCTTGCCTTCGCGCTTCTGTGATGAAAGTCTTCGTTTATG
TGTGCTTGAGGCATGGAATGGACATCTTGACAGTCATAGTCTTGACTCCA
GTTATAACTTCTGGCTTCGTGTTGTGACAGAACTTCTGTCATGCAATACG
CCATGGCACCGCCAGGATCGTCTCATACGCCTCCTCACTCCTCATTCGAT
TTTTCTCCCCTTAAATCCGAGTATAGATACGACAAAAAGCTCCCAAGATC
TATCTCTGCCGGAGAGCAAGCCCTTTTCGTGGCCCTTGGCGCCTGTCTGA
CCCACAGAGGGGCGCTCTCCACTCTACCTCCTTCAGAGGCCGTCCAGGAT
GCGCGGTCGAACCACCCCCCCACGCCCGGCGCCTCCACTGCTTTCCCCCC
TCCTCCTCTGCACATTTTTCTTCACACTCGTAGCCTCTTTCTCCATCCCT
CCGCATCGAATCGCCACACGCCCTTCGTTCGCCCCCCTGCCCCTTCCCCT
TCCCAAAAGCCCTCTGTGGGGCCCGAGCCCCTCCCTTCCCCCTCCCCTCC
CCTCCCCCTCTCCCCCCCCTTCGGCCTGCCCATCTACCCTCTTCGCAAAC
AGTCCTACCACAACCAATTACCCGTCCGAAGCCAAGTTCGGTGACCTTCC
CTACGCGCCTGGCCAGGTCAAGACGGGCACTTACCTGCGAGGGATGGACC
GTTACAAGTGGCGCACGTTACCGGACGTGTTCGAAACGGTCGCGTCCCTG
GCCCCCGAGGCGGTGGCGGTGGAGGACATGGTGCACACTCCGACGGCGAA
AATGACTTATGGAGAACTGAACCGGCAGATCGGAGCCTTGGCCGCCTTCT
TTCAGCACGAAGGCCTCAAGCCCGGGCAGTGCGTGAGTGTCTTCGCCGAG
AACAGCCATCGATGGCTGATCGCCGACCAGGCCATCCTAAAGGCGGGGGC
CTGCAACGCGGTCCGAGGCGTCAAGGCCCCCGTGGACGAGCTCCAGTACA
TCTACCAGAACAGTGAGAGCGTTGCCAGCGTGGTGGAGAGCGTGGAGCAA
ATCGAAGCCCTTATGCGAACCAACGGTGGCCTCACGGGCCGGTACGGCCC
CCCCCGCTTCATCCTCGTCCTCTTTCCCGGCGAAAGATCGGGCCAAGAGA
TCAGGGGTACGCAGGCTGGAGAGGG
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protein sequence of rna7392

>rna7392-protein ID=rna7392-protein|Name=rna7392|organism=Nannochloropsis gaditana|type=polypeptide|length=71bp
MKGLHGEKMTGDRWIARASFLQTVSNWNRMMRVLEDGQDAFYQHTAVLPG
LFLRLLGLRLGCLVDEKNFVV
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mRNA from alignment at CM002471.1:475027..475303+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7392 ID=rna7392|Name=rna7392|organism=Nannochloropsis gaditana|type=mRNA|length=277bp|location=Sequence derived from alignment at CM002471.1:475027..475303+ (Nannochloropsis gaditana)
ATGAAGGGGTTGCATGGTGAAAAAATGACAGGTGATCGATGGATCGCGCG
CGCGTCCTTCCTTCAGACTGTCAGCAATTGGAACCGCATGATGAGAGGTG
AGTGCACGAGGTTGACGTCGAAAGGGGAGTACATGAACGGTACAAACCAG
TTTCTTAGTACTTGAGGATGGCCAAGATGCATTTTATCAACATACCGCCG
TTTTACCTGGTCTATTTCTGCGTCTGCTCGGGCTCCGCCTGGGTTGCCTC
GTAGATGAGAAGAACTTTGTTGTCTga
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Coding sequence (CDS) from alignment at CM002471.1:475027..475303+

>rna7392 ID=rna7392|Name=rna7392|organism=Nannochloropsis gaditana|type=CDS|length=432bp|location=Sequence derived from alignment at CM002471.1:475027..475303+ (Nannochloropsis gaditana)
ATGAAGGGGTTGCATGGTGAAAAAATGACAGGTGATCGATGGATCGCGCG
CGCGTCCTTCCTTCAGACTGTCAGCAATTGGAACCGCATGATGAGAGTAC
TTGAGGATGGCCAAGATGCATTTTATCAACATACCGCCGTTTTACCTGGT
CTATTTCTGCGTCTGCTCGGGCTCCGCCTGGGTTGCCTCGTAGATGAGAA
GAACTTTGTTGTCTgaATGAAGGGGTTGCATGGTGAAAAAATGACAGGTG
ATCGATGGATCGCGCGCGCGTCCTTCCTTCAGACTGTCAGCAATTGGAAC
CGCATGATGAGAGTACTTGAGGATGGCCAAGATGCATTTTATCAACATAC
CGCCGTTTTACCTGGTCTATTTCTGCGTCTGCTCGGGCTCCGCCTGGGTT
GCCTCGTAGATGAGAAGAACTTTGTTGTCTga
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Synonyms
Publications