rna7384, rna7384 (mRNA) Nannochloropsis gaditana

Overview
Namerna7384
Unique Namerna7384
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1464
Alignment locationCM002471.1:459430..461651 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100053g37.5067.mrna
Orig protein idgnl|cribi|Naga_100053g37.5067
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:459430..461651 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100053g37gene7144Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23327.1cds7367Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7384rna7384-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7384 ID=rna7384|Name=rna7384|organism=Nannochloropsis gaditana|type=mRNA|length=1464bp
ATGCGGGCACGGCGCTGGTGGAGAGTTTCGTGTTGTGCGCTCTTCCTCCA
CGTCGCTTGCTCGAAAGCTTTCCTCCGGCCCTGCCCCGCCGTCTTCAACC
CCCCCCACAGCAAGCACCAGGACCCTCAAGTGCCGCGCCTGCCCGGTCAC
TGCCCACTAACTACACTTCCTGCAGCAACAACCGCCAATGCCCCTATTTC
AACCGCGCCCGTCGTGGCTGATCAAGCTTTGGGTACCCTGCTTGTGGAGG
CGGACACGGGGTGCGACAAACTCGACTTGAAGCGTGTTTTCGAGGCCCTG
ACTGCCCCGTCCTCTCCTTTTTTAGCCAAATACTGGCAACGCGCCCCATG
TTTCACGAGTACGTCTATCCCCTGCCTTGCTCAAGCGTGGACCATGGCGG
ACATGGAGGAGGCAATTGCCAAAGAGTTCTTGCTGGCGGGCCGCGGGTTC
TTCGAGGAGAATAGTGAGACAGGGGGTTGGAAAATGGCAGCCGTGGGGCT
AGCACGAGGCTCCTCGTTCGAGGAGGCCAAGCTCAGGCCCGAGGATGTCC
GGGCAGCACTGAAGCAGCGGAGCGGCACGGTCGTGTTCAACAGCGTGGGG
GGCTCGGTGGCGGCCCTGGCCGGGGTCTGCCTCGACGCGGTGGAGGCTTT
CCGTCTCCCCGTGGCGCTGAACTTGTACATGACAGCCCCCGGGCAGTCCA
CCTCGGCGCCCCCGCACACGGACAAGCAGGACGTGTTCGTCCTCCAGACC
CAAGGCCGGAAGCGGTGGCGGGTGCTGTACATGCCGGCGGGTTTCCCGCA
CACGACCGACACGGTGGTGGGCATGGCCGAGGAGAGGGACCCCTCCGTGC
ACCTGACCCTGGGGGTGGACACGCACATCTGGGGGCTCACGCACGCCGCC
CTCCGCGACTACTTCCTCTACCGCCTCCAGCCGGGCCCCACTGCCACGCT
TCCCCCACCGCCCCCGTCCACCCAGACCCTCCCCGAGGCCTTCGTCCGCT
TCCACGCCCAGCTCCCACTGGGCCTGAGGGAGGCGGCCGCGGCGGATGCG
GGGACGCGGTGGTCCGCGCTCAAGCAGGTCCTGGGCGCGGGGGTGGAGGC
GGAGTTCCAGGCCGTGATGCGGGAGATCGAGGACGAGCATGTCCTGCAGC
GGCTGGAGGAGGAGGGCGCGGCGGAGGTGCTGGGGGAGGTAGTGGCCCGC
CTCCTCGACCACCACCGGTCCCTGACCTCCGTCTTCAGGGCCATGTACAG
CGACGTCAAATACGGGCTCTCGGACGTGACTCGAGACCTTTCCTGCCTCC
GCTCCCAGCCCTACTACCAGAACCTGGAGACGACCATGCAGGCCCTGGTG
GACTGGGCGGCCCCGGCGCCTGCGGGGGGGAGGGAAAGGGAGAGGAAGAT
GCCGGGGGGGCAGCGCCGAGCAAAGGCGGCTTCGGGGGGGCCAAGGTCCT
CCGTACATTCGTAA
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protein sequence of rna7384

>rna7384-protein ID=rna7384-protein|Name=rna7384|organism=Nannochloropsis gaditana|type=polypeptide|length=482bp
MRLQQSTVVLCLLLGYILCYFGSPNTSGVMVSAAKALEEGEEKASARRSN
TRGAEAKRMRGMKVDVMGGLESEDDDNEVWAEDEDVDEEEYDDDDEEADE
EEEEGEIADDTDDELDDDEYDSIDDDEMLDDAGEEHVKNVQRKGKKKVKP
VVLDDVASKDGELRGSLILDEISSYMVEDFEAPGGTITYYKVVLHLSNAG
QRPLCGMTVAVPPKRGMEIEQLWTMEESEIEDVYDVLWTDYVPPKDPRHG
VRYFGLVTKGAAPNVTIDSLSPCLSDYEDDDEEDADLDDDEMESEEEGGA
EDAKHGPGRVAKRVVAGHPKPLARGRGVPDSLPRRGLQARQLPADAGLPM
PVDPLAANWTLVEVLETLVLKKAGPGPEAFELLVNARVSNMGQKPLCDLS
LFVRDLHLAGAYWSLLPVEGTPDVARLPSKESSLMPGQSHYFGLVVEETA
KKEGEQEGQPNLVVLTAKECVGMGPAAGAGKA
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mRNA from alignment at CM002471.1:459430..461651-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7384 ID=rna7384|Name=rna7384|organism=Nannochloropsis gaditana|type=mRNA|length=2222bp|location=Sequence derived from alignment at CM002471.1:459430..461651- (Nannochloropsis gaditana)
CCAGCCCTCTTTCTGCCCTTTTTGACGTCCTCTGTGAGCATACGTGCTTT
CCAGAGTAAAATATCATATCTTTAGATATTTTCGAAGCTCCAGGCAAGAG
GAAGGTGGATTGAAAGGACAGAATTTTGTCTAATTTTGTGTGTGTCATAT
CTACAGATAAGCAAATCGGAACAGGTCGTCTGCTATTCCGAGCCACCCTT
AAGTCCAATACAAGGGACCAAAAATGCGATTGCAGCAATCTACTGTAGTA
TTATGCCTCCTTCTGGGCTACATACTCTGTTATTTTGGTTCACCTAACAC
CTCTGGTGTCATGGTGAGCGCAGCAAAGGCTCTCGAAGAGGGCGAAGAGA
AGGCTTCAGCAAGGCGTTCGAACACCCGCGGGGCAGAAGCAAAACGCATG
AGGGGGATGAAGGTGGACGTCATGGGCGGACTTGAGAGCGAGGATGATGA
CAATGAGGTTTGGGCAGAAGACGAAGACGTGGACGAGGAGGAGTATGACG
ATGACGACGAAGAAGCGGACGAGGAGGAGGAGGAAGGAGAAATTGCAGAT
GACACTGACGACGAATTAGACGATGATGAATACGACAGCATTGACGACGA
TGAGATGTTGGATGACGCGGGGGAAGAGCATGTGAAAAACGTGCAGAGGA
AAGGCAAGAAGAAGGTGAAGCCCGTTGTCTTGGACGATGTGGCAAGCAAG
GACGGAGAGCTGCGGGGGTCTCTCATCCTTGACGAGATCAGCAGCTACAT
GGTCGAGGACTTCGAAGCCCCCGGGGGCACCATCACTTACTACAAGGTGG
TGCTCCATCTCTCAAACGCCGGGCAGCGGCCCCTCTGCGGGATGACCGTG
GCGGTGCCCCCCAAGCGCGGCATGGAGATCGAGCAGCTCTGGACGATGGA
GGAGTCGGAGATCGAGGACGTCTACGACGTTTTGTGGACCGACTACGTCC
CGCCCAAGGACCCGAGGCATGGAGTGCGGTACTTCGGTCTGGTCACCAAG
GGAGCAGCGCCGAACGTGACGATCGACTCCCTCTCCCCCTGCCTGAGCGA
CTACGAGGACGACGACGAGGAGGACGCGGACCTGGACGACGACGAAATGG
AGAGCGAGGAGGAGGGCGGGGCGGAGGATGCAAAGCACGGCCCCGGGCGC
GTCGCGAAGCGGGTGGTGGCAGGGCACCCGAAGCCGTTGGCGCGAGGCCG
CGGGGTCCCCGACTCCCTTCCCAGGCGAGGGCTCCAGGCCCGGCAGCTCC
CTGCGGACGCGGGCCTGCCCATGCCAGTGGACCCGCTGGCAGCAAACTGG
ACGCTGGTGGAGGTGCTGGAGACGCTGGTCTTGAAGAAGGCGGGGCCCGG
GCCCGAGGCCTTCGAGCTCCTGGTCAACGCCCGCGTCAGCAACATGGGCC
AGAAGCCCCTCTGCGACCTCTCCCTCTTCGTCCGGGACCTGCACCTGGCG
GGGGCGTACTGGAGCCTGCTCCCGGTGGAGGGGACGCCGGACGTGGCGCG
CCTGCCCTCGAAAGAGTCCTCGCTCATGCCGGGCCAGAGCCACTACTTTG
GGCTGGTGGTGGAGGAGACCGCGAAGAAGGAGGGGGAGCAGGAGGGGCAG
CCCAACTTGGTGGTGCTCACGGCCAAGGAGTGCGTGGGCATGGGCCCGGC
GGCGGGGGCGGGGAAGGCCTGAGGCGTTGGGGGGACAGGGGCAGGAAGGA
GTATAAAGAGAGGGTGGGCGGGATGTGTATGTCAGGAGGGGGTAGAGTAG
AGGAGGCAGGGTGAGACTGCGGCAAGGAGGGGCGAAGGGAGGAGGGCCGG
AGGGGCGGGCCACTACAGAGGAGGGGGGTTGGGGCACTGCCGCGGCCTCC
ACGCCTGCCGAGGAGACCGAGCTCTCTGGATTGTCGGGGGAGGGGGGCGC
GCCTGACGGCGTGCTGGGGGAGGGCGTGTGAATTAGAAAGGATGATGCCA
GGATGATCGGCTTGGGGTCGAGGGGTCTGGGAGGGCGGGAAGGCGGGGAC
AAGGCGGGATAAAGAGCCGTGTGATGCTCCCCTCGCACCCAGGGTATGGG
TTACGAATGTACGGAGGACCTGAGGCAAGCACAACGATCGACGGGTGGGA
GAAGCGGGGCTAGGAGCCATTGCTCGATTTTCTTCGCATTTTTTCTTTCG
CGTTCTGCACATGCTCGATCCCTCGCGCGTCCACGACAGACCTCTTCCCA
GCCTACCTCTTTTTCTTCCCCC
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Coding sequence (CDS) from alignment at CM002471.1:459430..461651-

>rna7384 ID=rna7384|Name=rna7384|organism=Nannochloropsis gaditana|type=CDS|length=1449bp|location=Sequence derived from alignment at CM002471.1:459430..461651- (Nannochloropsis gaditana)
ATGCGATTGCAGCAATCTACTGTAGTATTATGCCTCCTTCTGGGCTACAT
ACTCTGTTATTTTGGTTCACCTAACACCTCTGGTGTCATGGTGAGCGCAG
CAAAGGCTCTCGAAGAGGGCGAAGAGAAGGCTTCAGCAAGGCGTTCGAAC
ACCCGCGGGGCAGAAGCAAAACGCATGAGGGGGATGAAGGTGGACGTCAT
GGGCGGACTTGAGAGCGAGGATGATGACAATGAGGTTTGGGCAGAAGACG
AAGACGTGGACGAGGAGGAGTATGACGATGACGACGAAGAAGCGGACGAG
GAGGAGGAGGAAGGAGAAATTGCAGATGACACTGACGACGAATTAGACGA
TGATGAATACGACAGCATTGACGACGATGAGATGTTGGATGACGCGGGGG
AAGAGCATGTGAAAAACGTGCAGAGGAAAGGCAAGAAGAAGGTGAAGCCC
GTTGTCTTGGACGATGTGGCAAGCAAGGACGGAGAGCTGCGGGGGTCTCT
CATCCTTGACGAGATCAGCAGCTACATGGTCGAGGACTTCGAAGCCCCCG
GGGGCACCATCACTTACTACAAGGTGGTGCTCCATCTCTCAAACGCCGGG
CAGCGGCCCCTCTGCGGGATGACCGTGGCGGTGCCCCCCAAGCGCGGCAT
GGAGATCGAGCAGCTCTGGACGATGGAGGAGTCGGAGATCGAGGACGTCT
ACGACGTTTTGTGGACCGACTACGTCCCGCCCAAGGACCCGAGGCATGGA
GTGCGGTACTTCGGTCTGGTCACCAAGGGAGCAGCGCCGAACGTGACGAT
CGACTCCCTCTCCCCCTGCCTGAGCGACTACGAGGACGACGACGAGGAGG
ACGCGGACCTGGACGACGACGAAATGGAGAGCGAGGAGGAGGGCGGGGCG
GAGGATGCAAAGCACGGCCCCGGGCGCGTCGCGAAGCGGGTGGTGGCAGG
GCACCCGAAGCCGTTGGCGCGAGGCCGCGGGGTCCCCGACTCCCTTCCCA
GGCGAGGGCTCCAGGCCCGGCAGCTCCCTGCGGACGCGGGCCTGCCCATG
CCAGTGGACCCGCTGGCAGCAAACTGGACGCTGGTGGAGGTGCTGGAGAC
GCTGGTCTTGAAGAAGGCGGGGCCCGGGCCCGAGGCCTTCGAGCTCCTGG
TCAACGCCCGCGTCAGCAACATGGGCCAGAAGCCCCTCTGCGACCTCTCC
CTCTTCGTCCGGGACCTGCACCTGGCGGGGGCGTACTGGAGCCTGCTCCC
GGTGGAGGGGACGCCGGACGTGGCGCGCCTGCCCTCGAAAGAGTCCTCGC
TCATGCCGGGCCAGAGCCACTACTTTGGGCTGGTGGTGGAGGAGACCGCG
AAGAAGGAGGGGGAGCAGGAGGGGCAGCCCAACTTGGTGGTGCTCACGGC
CAAGGAGTGCGTGGGCATGGGCCCGGCGGCGGGGGCGGGGAAGGCCTGA
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Synonyms
Publications