rna7380, rna7380 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7380
Unique Name	rna7380
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3465
Alignment location	CM002471.1:452510..453808 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100053g32.5044.mrna
Orig protein id	gnl\|cribi\|Naga_100053g32.5044
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:452510..453808 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100053g32	gene7140	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7380	rna7380-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23304.1	cds7363	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:452510..453808+
coding sequence from alignment at CM002471.1:452510..453808+

mRNA sequence

>rna7380 ID=rna7380|Name=rna7380|organism=Nannochloropsis gaditana|type=mRNA|length=3465bp
ACTCTGCAAGAGGCAATGCGAGCCCTCACTTTCGCAGGATCCTCTCCGCT
GCCTTTCCCAGGATTAATCTTTTTGGAGGAACTACCGCCGAAAACTCCCC
AATACAGATTGAGTGTTCTCCGACGACCATTGTGTTGCCGGTAGAGACCG
GGAGCAGGGCATATGAAAGGTGTCAGAGTACATACGGGTCGCCTACTTGC
TTCAGCGGTTCTTGTGGAGAATAATAGAGCGAGACACCAACAGATTATCA
ACAGCATGTTTACAGGCATCGTAATAAGTCCCATCGTCTCTTTTCCTATG
TAGTGAATGTGGTCGTATGATGGAATTATTTGAGCTAGCACAGCGGGATG
GATGAAAGCACATTATGGAATGCCTTGCTGATTTTCCAGCTTGGAGGATT
GCACTTGAGGAGCCTCATGAGCTTTGTCAAGACCTTCGGCAAGAAGGGTC
TCTTTTATGCGGTTCATTGTGCGCCGGCTGTACAAATTCAATCCAAGCCG
GTGATTGGACGACTGTCGAAGCTCTGGGCCGGGAGCTTGAGGAGGTGGCG
TGGGAGGGTTTACACAGCAGCCCCGCATGGCGCGATGTCACAGTAACCAC
CAGAAGAGTGTATGCCTACTCTCAATTCATTCTAGCGGCGGTGCAGGCTG
TAAAATTTCAACAAGAAGAAGACACGGACACAAACACTTCGACTCAAAAA
CGTTCCAGCGTAGTCTCCACGCGCTTGAAAGAATGCATACGCCGAATAGA
CATGGCCTTGCTCATGGGCCCGCCCAGCATTAAGGGGGTAGCCAACGGCT
TGATCGAATGGGCAGAGCAACGCCTTCGCCCGTGCAAGCCAGAGGCGGCC
CAATTCTTGTCGTCGCGACCCAGGGAGCTCCGAGTGAAGCGGCCGCGTCC
CGTGGAGGGTTTAGTTGGAGACATTCCGCGCCTGGCGTGCCCCAGCCTCG
ACGCTTTTCTGGAGAAGCACATGGTACCGCAGGTGCCTGTTATTCTTACA
CAGTGCATGGAGCACTGGCCGGCGTTGAGGCGTTGGAGAGACATGGACTA
TTTGAAAGAGGTTGCGGGGGAGCGGGTGGTTCCGGTGGAGGTGGGTTCAG
GCACCTACATGGCGGGTGAGGGGGAGGGATTGGAGGAAGAGGGGGCTTGG
GGGCAAGAACTCATGCCTTTGGGAGACTTCATCGATCGCTATATGACAGG
GGCCGAGAGTGGCCCGGAGTCAAGGGAGGGTGACGCCAGCAGCGCCGGCC
CAGGGGGCCAGACGTGGGCAGACGGAGGGGAAGTGGAGGCCGGACGGCGT
GAGACCGGTTGCAGGGCGTACTTGGCGCAGCACGAGCTCTTTGAACAGAT
CCCAGCTTTGCAGAAAGACGTGTGGGTCCCCGACTACTGCGCCCTGGAGG
TGGAGGGAGGGGAGGAGGCCCTGGAGGAGGACGGACTTGTGGTCACCAAT
GCCTGGTTCGGCCCCGGGGGCACTGTCTCGCCCACGCATACGGACCCCTA
CCACAACCTGCTTGCCCAGGTGGTTGGCTCCAAGGCGGTCAGGCTTTTCG
CCCCCTCCGAGTCCCCCTGCCTCTACCCCTGCCAGGGCCTCCTCCGCAAC
AACAGCCGCGTCGATCCCCTGCGCCCCGACCTGGCCCGCTTCCCCCTCTT
CGCGCGGGCTAATAGCCAGACTTGCGTGCTGGAGGAGGGGGAAATGCTCT
ACATCCCGCCCCTCTGGTGGCATCACATCCAGGCCCTGAGCCCGTCCTTC
TCTGTCTCCTTCTGGTGGGGCCGACGCAGGGAGGGCGCCGACCCCGCGCC
GGGTTGAGGGATGCACGGGCTGTGCTCGGGTGATTCGCTTAGAAACTACG
GGCGGAAAAGAACATTTGCTTGCAGAAAGCAAGGTTCTGCCAGGGGGGGG
GCTCTGTTTCAGTGGCCTTTTTCTTTCCTGCGAGCCAGCGAGGGGTGGGG
GTAAAGTTAACTTCCCTCGCCTCTACCTCGAGCAAGGCGCTACCAAACCG
ACATCCGCCCGCTAATCGACTGCATTGATAGGGATAGGTCATTTAGCTCG
GAAGGCGTGACCGTCTCCATGTCTGTCGCTGGCGGCGCCAGGTCCTCGAG
CTGCCAGTACCGGCCTCCCACGGCGAGCAGGGAGGCCTCGGGGGGGGGCG
TAAGAGCCTCCATGCTCGGGAAGGGGCGGAAGGAGACGCGTGTTTGCTCG
ACAGCATCGTAAATTGTGATGACGATGCTGTAGCCATGGGCGACAGCGGC
CATCTCTAGGGATTCCACGGTGGGGCCTCTGCCGCTGAGAGGCGGGCCTG
CGTTCTGCCCCGCCGCGATAGCGCCCGCATGGACCCCCGCATGAAGCCCT
AGGCCTCCGGGCGGTGCTTGATACAGCAGTCCTCCATGTGTCGAGATGCA
TCGATCCATTGTGGCACGCACCTGCGCACTGAGGCTCGGTGTGCCGTACA
CTGCCAGGCTGATTTCTTCCAAGAAGCACCGACCAGGGCTATCGGGGAAT
CTGAGCGTGAGACCAAACCGCTGTTGGAGCAGCCAGGCGCATTCTTGCAG
GCATGTCAGGGAGAGATTCGGTCGGCAAAGGCTCGGAGAGGCCGCTTGCC
ACGGGCTCGCACAGGGGCTTGAAAGTGTGGAGGGAATCGACGGCGGAGCT
TTGTCCAGGAAGGAGGGCCACTGGGCAAGGCTCTGCATGCTTTCAGACGG
AGAGCTGGGTGGCATGCTTGGACATTGAAAGTTCGGGAACGCTTTCCCCC
AAGGAGACACTTGCAGGGGGATCTGCGGTATGGGTGCTGTATTGTTCAAG
AGCTCTGATTGAGAGGGGAGAATGGAAGGCAAATTATTCCCCACCAAAGC
CAGTTCTGTCCCAACACTTCCTGCGAAGTGGATGGCTTGGTCATTAGAAA
GATGCTGTGGAGCGGAGAAAGTATCTCCGACCATCATTTCGACGTGTCTG
ACATCAGCCTGCGGATTCCGGTATCCTGAAGTCGATTTGCTGAGGAAATT
TGGTTGTATCCCGCTCGAACGGTCTTGACGCAGCAAAGCAGAAATGGCTA
AAATTGCTTGATTATTGGCCACTTGAGAGGGAGCCACTACTCGTATACTC
AAATTGCGTACAGAAATGAATTCGATGGAGTCTACGCCACACTGGATAGC
CACGTCGTGGATGACATGGCGTTGGGACACTTGGGCATAAAAACTGTAGT
TCTTTTTGAGAAATTCTATCTCGTCGGAGTTTGAAGAAATATTGCTTATG
AAAGGCAGGCGAATGTAGCTGTGCGAATGTCGTGACATGCTGCACAGAAA
ATTTGCGGGTCGGGGAGGACCTGAGGGCTACAGCTAGGGAGATAGATCTA
GGAGGATTGATCCCTGACAGGATGAAGAATAAACGGGAGAGAAAGAATAT
GGGAAATGATTAAATAAAGACGCTCTACGACATTCCATCCAAGGTTTTCC
CGCAAGGAGCCAGCA

protein sequence of rna7380

>rna7380-protein ID=rna7380-protein|Name=rna7380|organism=Nannochloropsis gaditana|type=polypeptide|length=432bp
MSRHSHSYIRLPFISNISSNSDEIEFLKKNYSFYAQVSQRHVIHDVAIQC
GVDSIEFISVRNLSIRVVAPSQVANNQAILAISALLRQDRSSGIQPNFLS
KSTSGYRNPQADVRHVEMMVGDTFSAPQHLSNDQAIHFAGSVGTELALVG
NNLPSILPSQSELLNNTAPIPQIPLQVSPWGKAFPNFQCPSMPPSSPSES
MQSLAQWPSFLDKAPPSIPSTLSSPCASPWQAASPSLCRPNLSLTCLQEC
AWLLQQRFGLTLRFPDSPGRCFLEEISLAVYGTPSLSAQVRATMDRCIST
HGGLLYQAPPGGLGLHAGVHAGAIAAGQNAGPPLSGRGPTVESLEMAAVA
HGYSIVITIYDAVEQTRVSFRPFPSMEALTPPPEASLLAVGGRYWQLEDL
APPATDMETVTPSELNDLSLSMQSISGRMSVW

mRNA from alignment at CM002471.1:452510..453808+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7380 ID=rna7380|Name=rna7380|organism=Nannochloropsis gaditana|type=mRNA|length=1299bp|location=Sequence derived from alignment at CM002471.1:452510..453808+ (Nannochloropsis gaditana)
ATGTCACGACATTCGCACAGCTACATTCGCCTGCCTTTCATAAGCAATAT
TTCTTCAAACTCCGACGAGATAGAATTTCTCAAAAAGAACTACAGTTTTT
ATGCCCAAGTGTCCCAACGCCATGTCATCCACGACGTGGCTATCCAGTGT
GGCGTAGACTCCATCGAATTCATTTCTGTACGCAATTTGAGTATACGAGT
AGTGGCTCCCTCTCAAGTGGCCAATAATCAAGCAATTTTAGCCATTTCTG
CTTTGCTGCGTCAAGACCGTTCGAGCGGGATACAACCAAATTTCCTCAGC
AAATCGACTTCAGGATACCGGAATCCGCAGGCTGATGTCAGACACGTCGA
AATGATGGTCGGAGATACTTTCTCCGCTCCACAGCATCTTTCTAATGACC
AAGCCATCCACTTCGCAGGAAGTGTTGGGACAGAACTGGCTTTGGTGGGG
AATAATTTGCCTTCCATTCTCCCCTCTCAATCAGAGCTCTTGAACAATAC
AGCACCCATACCGCAGATCCCCCTGCAAGTGTCTCCTTGGGGGAAAGCGT
TCCCGAACTTTCAATGTCCAAGCATGCCACCCAGCTCTCCGTCTGAAAGC
ATGCAGAGCCTTGCCCAgtggccctccttcctggacaAAGCTCCGCCGTC
GATTCCCTCCACACTTTCAAGCCCCTGTGCGAGCCCGTGGCAAGCGGCCT
CTCCGAGCCTTTGCCGACCGAATCTCTCCCTGACATGCCTGCAAGAATGC
GCCTGGCTGCTCCAACAGCGGTTTGGTCTCACGCTCAGATTCCCCGATAG
CCCTGGTCGGTGCTTCTTGGAAGAAATCAGCCTGGCAGTGTACGGCACAC
CGAGCCTCAGTGCGCAGGTGCGTGCCACAATGGATCGATGCATCTCGACA
CATGGAGGACTGCTGTATCAAGCACCGCCCGGAGGCCTAGGGCTTCATGC
GGGGGTCCATGCGGGCGCTATCGCGGCGGGGCAGAACGCAGGCCCGCCTC
TCAGCGGCAGAGGCCCCACCGTGGAATCCCTAGAGATGGCCGCTGTCGCC
CATGGCTACAGCATCGTCATCACAATTTACGATGCTGTCGAGCAAACACg
cgtctccttccgccccttcccgAGCATGGAGGCTCttacgcccccccccg
aggcctccctgctcgccgtGGGAGGCCGGTACTGGCAGCTCGAGGACCTG
GCGCCGCCAGCGACAGACATGGAGACGGTCACGCCTTCCGAGCTAAATGA
CCTATCCCTATCAATGCAGTCGATTAGCGGGCGGATGTCGGTTTGGTAG

Coding sequence (CDS) from alignment at CM002471.1:452510..453808+

>rna7380 ID=rna7380|Name=rna7380|organism=Nannochloropsis gaditana|type=CDS|length=1299bp|location=Sequence derived from alignment at CM002471.1:452510..453808+ (Nannochloropsis gaditana)
ATGTCACGACATTCGCACAGCTACATTCGCCTGCCTTTCATAAGCAATAT
TTCTTCAAACTCCGACGAGATAGAATTTCTCAAAAAGAACTACAGTTTTT
ATGCCCAAGTGTCCCAACGCCATGTCATCCACGACGTGGCTATCCAGTGT
GGCGTAGACTCCATCGAATTCATTTCTGTACGCAATTTGAGTATACGAGT
AGTGGCTCCCTCTCAAGTGGCCAATAATCAAGCAATTTTAGCCATTTCTG
CTTTGCTGCGTCAAGACCGTTCGAGCGGGATACAACCAAATTTCCTCAGC
AAATCGACTTCAGGATACCGGAATCCGCAGGCTGATGTCAGACACGTCGA
AATGATGGTCGGAGATACTTTCTCCGCTCCACAGCATCTTTCTAATGACC
AAGCCATCCACTTCGCAGGAAGTGTTGGGACAGAACTGGCTTTGGTGGGG
AATAATTTGCCTTCCATTCTCCCCTCTCAATCAGAGCTCTTGAACAATAC
AGCACCCATACCGCAGATCCCCCTGCAAGTGTCTCCTTGGGGGAAAGCGT
TCCCGAACTTTCAATGTCCAAGCATGCCACCCAGCTCTCCGTCTGAAAGC
ATGCAGAGCCTTGCCCAgtggccctccttcctggacaAAGCTCCGCCGTC
GATTCCCTCCACACTTTCAAGCCCCTGTGCGAGCCCGTGGCAAGCGGCCT
CTCCGAGCCTTTGCCGACCGAATCTCTCCCTGACATGCCTGCAAGAATGC
GCCTGGCTGCTCCAACAGCGGTTTGGTCTCACGCTCAGATTCCCCGATAG
CCCTGGTCGGTGCTTCTTGGAAGAAATCAGCCTGGCAGTGTACGGCACAC
CGAGCCTCAGTGCGCAGGTGCGTGCCACAATGGATCGATGCATCTCGACA
CATGGAGGACTGCTGTATCAAGCACCGCCCGGAGGCCTAGGGCTTCATGC
GGGGGTCCATGCGGGCGCTATCGCGGCGGGGCAGAACGCAGGCCCGCCTC
TCAGCGGCAGAGGCCCCACCGTGGAATCCCTAGAGATGGCCGCTGTCGCC
CATGGCTACAGCATCGTCATCACAATTTACGATGCTGTCGAGCAAACACg
cgtctccttccgccccttcccgAGCATGGAGGCTCttacgcccccccccg
aggcctccctgctcgccgtGGGAGGCCGGTACTGGCAGCTCGAGGACCTG
GCGCCGCCAGCGACAGACATGGAGACGGTCACGCCTTCCGAGCTAAATGA
CCTATCCCTATCAATGCAGTCGATTAGCGGGCGGATGTCGGTTTGGTAG

Synonyms

Publications