rna7377, rna7377 (mRNA) Nannochloropsis gaditana

Overview
Namerna7377
Unique Namerna7377
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2241
Alignment locationCM002471.1:448938..449174 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100053g30.5080.mrna
Orig protein idgnl|cribi|Naga_100053g30.5080
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:448938..449174 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100053g30gene7137Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7377rna7377-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23340.1cds7360Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7377 ID=rna7377|Name=rna7377|organism=Nannochloropsis gaditana|type=mRNA|length=2241bp
ATGTGGAACTGTGGGAGGCTGGTAAAAATACACATTTCATTACCATGGAG
GACATCAGGATCAGTGTTGTATTCCCGGAGTTTGATGTCACACGGCAGCA
CGTCTGCAACGCCTGTTGAGGGGTCCCCTCCATCTTCGAAGCCCTTCACC
AAGCTCCTTATAGCCAATCGCGGCGAGATTGCATGCCGCATCATTCGCAC
GGCCCGAAAAATGGGCATCAAGACTGTTGCTGTGTACAGTGATGCCGATG
CCCGGTCGCAGTTCGTCCGGATGGCCGACGAGGCGCACTGGATCGGACCC
TCGCCTACCACCGAGTCCTACCTAGTCAAGGAAAAAATCCTCGAGGTGGC
GAAGCGGGCAGGCGTCCAAGCCCTGCATCCGGGCTATGGTTTCCTCTCAG
AAAACCCAGACTTTGCGGAAATGTGCCAGTCCGCGGGCGTGGTGTTTGTG
GGTCCTCCAGTGCCAGCCCTGCGCTCCATGGGGTCGAAGGCGGCAGCCAA
GCGGATCATGACCGAGGCGGGGGTGCCCGTGACGCCGGCCTACTACGGAG
AAGAGCAGGACGATGCGCGCTTGCTGGCGGAGGCGGAGAAGGTAGGTTAC
CCGGTGATGATCAAGGCGGTGACGGGGGGCGGGGGCAAGGGCATGCGCAG
GGTCATGGCGGCGGCCGATTTCCTTCCCGCCCTGGAGGCCTGTCGCCGCG
AGGCGCTCAAGTCCTTCGGGCGGGACAGGATGCTGATCGAGAAGTACCTG
GTGGACCCGCGGCATATCGAGCTGCAGGTGTTCGGAGACCGGCACGGGAA
TGCGGTGCACCTGCACGAGAGAGACTGCTCGGTGCAACGCCGACACCAGA
AGGTGCTCGAGGAGTCCCCGGCGCCTGGCCTCGGGGAGGCGCTCAGGGAG
GAGATGGGGAGGGCCGCCGTCCTAGCTGCCAAGGCGGTCGGGTACACGGG
CGCGGGCACCGTGGAGTTTCTCTTGGACCCCGCCTCGCAGCGCTTCTACT
TCTGCGAGATGAACACGCGCCTGCAGGTGGAGCACTGCGTGACTGAGATG
GTCACCGGGGTCGACCTGGTCGAGTGGCAGCTCCGAGTGGCGGCGGGCGA
GCCCCTGCCCGTGCGGGAGCAAGCGGATATCCGGGCGCGGGGCCACGCCA
TCGAGGCTCGCATCTACGCGGAGAACCCGGCCAAGGGCTTCTTACCGGCC
ACGGGCTCCCTCAAGCGGCTGCGGACGCCGGTGTCGGAGGAGGGGGCGGT
GCGCGTGGAGACGGGCGTGGTGGAGGGGGACGAAGTGAGCATGTACTACG
ACCCGATGATCGCCAAGCTACTGACCTGGGCGCCCTCCCGCCCGGAGGCC
CTTCGGCGCATGGCCCGCGGCCTGCGCGACTACCAGATCGCAGGACTGCC
CAACAACCTCGAGTTTCTCGAGCGCTGCGTCGGGCATCCGGCCTTCGAGC
GCGGCGGTGTGACCACCGGCTTCCTGGTCGAGTACGAGGCGGACGTGTCC
ATCCCACCGCCCTCCCCGCCCTCCCCCCACCTGTTGGCCCTCGCCGCCTA
CGCCTTGACGCAGCAGCGAGAGGCACCGCGGGGGAGCACGCCTTGGCTGG
GGGGCGCATGGCGGGGCGTGGGAAGACGGAGGTTGCCCGTGGAATTCGTC
GTGGACGGGCTTGAGGAGTCCTTTGCCTTGAAGGCGGGCGTAATGGACGG
AGGCGTGCAGGAGGGGGGGGGCGGGGGGAGGCACGCGTGGGGCCTGCGGG
TGGAGATGCCTGACGGGCAGGCTTATCGGGTGTCGGGGTCCCGTTGCGAA
GGAGAAAGGGCGAGCGGGGCTCACGGCGACGAATGGGAGGCCACGGTCGA
GGGTGTCACATACAAGTACAGCGCCTGGATAGAGGACGGCGGGATGCGAG
GCGGCGCGAGGGTACAGCTGTGGCTCCGGAGTGGCGGCCTCGTGGACGAT
CCTTTGCAGCGGACCACCTTCTCCCTGCGGGTACCGGCCGCGGCGCTGGG
GCACGAGCTGGCGGGGGGGGTCATGCCGCGAATCCTGGCGCCCATGCCGG
GAAAGCTCGTGAAGGTGTTGGTCAAGGCCGGCGAGGCGGTGCGGAAGGGG
CAGTCCTTGCTCATCCTGGAGGCCATGAAGATGGAGCACGTGATCACGGC
CCCACAGGACGCCACCGTTGACTCGGTGGCACGGGCAGTGGGCGATGTAG
TGCAGGAGGGGATCCCCTTGGTCAGCCTGAAGGCGGCGTAG
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protein sequence of rna7377

>rna7377-protein ID=rna7377-protein|Name=rna7377|organism=Nannochloropsis gaditana|type=polypeptide|length=78bp
MGSVDSLQRGKREPWKGSGGMYSSVGIGRGSWRVNRGREGSVDGPRGSHL
TFDWDWLYTNWRVCIESKEGGGTTHANN
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mRNA from alignment at CM002471.1:448938..449174+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7377 ID=rna7377|Name=rna7377|organism=Nannochloropsis gaditana|type=mRNA|length=237bp|location=Sequence derived from alignment at CM002471.1:448938..449174+ (Nannochloropsis gaditana)
ATGGGCAGTGTGGATAGCttgcagagggggaagcgggagccATGGAAGGG
AAGTGGGGGGATGTACTCGTCGGTTGGGATTGGAAGAGGGTCGTGGCGTG
TGAACAggggtcgggaggggagtgTGGACGGGCCTCGAGGCAGTCACCTT
ACTTTCGACTGGGATTGGTTATATACGAACTGGAGGGTGTGCATAGAATC
taaggaaggtgggggcaCAACCCATGCCAATAATTAA
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Coding sequence (CDS) from alignment at CM002471.1:448938..449174+

>rna7377 ID=rna7377|Name=rna7377|organism=Nannochloropsis gaditana|type=CDS|length=237bp|location=Sequence derived from alignment at CM002471.1:448938..449174+ (Nannochloropsis gaditana)
ATGGGCAGTGTGGATAGCttgcagagggggaagcgggagccATGGAAGGG
AAGTGGGGGGATGTACTCGTCGGTTGGGATTGGAAGAGGGTCGTGGCGTG
TGAACAggggtcgggaggggagtgTGGACGGGCCTCGAGGCAGTCACCTT
ACTTTCGACTGGGATTGGTTATATACGAACTGGAGGGTGTGCATAGAATC
taaggaaggtgggggcaCAACCCATGCCAATAATTAA
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Synonyms
Publications