rna7376, rna7376 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7376
Unique Name	rna7376
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3531
Alignment location	CM002471.1:446660..448900 +

Link to JBrowse

Properties


Property Name	Value
Product	methylcrotonoyl- carboxylase
Orig transcript id	gnl\|cribi\|Naga_100053g29.5079.mrna
Orig protein id	gnl\|cribi\|Naga_100053g29.5079
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:446660..448900 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100053g29	gene7136	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7376	rna7376-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23339.1	cds7359	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:446660..448900+
coding sequence from alignment at CM002471.1:446660..448900+

mRNA sequence

>rna7376 ID=rna7376|Name=rna7376|organism=Nannochloropsis gaditana|type=mRNA|length=3531bp
TTCTTCTCTCTTGTTTGAAGGCTGGCAGGCAACCCAGGACCTTACTTTTC
CTAGAGGGCAAGGGCGTCGCCGTCCTCGCCGACGGTAGGGCCCATCCCCG
AAGGGGGGCTCCAGCAGGACTTGGCTTGCGTGCAGTGAGACGTCATGACG
ACATCGAGAATACCTTTGTTTGCCAGCGCATGCGGTGTAGTATTGGCAGC
AATGCTTCTGGGACTAGCGCAAGCGGAGGGGCCTTCCATGGAAGATGCGG
ATCTCTCGTCAACCATGGAGCACAATGTGGATGGCCCCGTAAGTATTCGG
TCACAAAAATTTTCATTCCTGCGTCTTCCGTCCCTCTTTCCGCGCTTGGA
GCCCGCCTCCGCGTCCCCGGAGCGTAGCTTCCACAGCCTGGAGGCCCTAT
CAGTCGATCCAGAGACAGGTGGCGTCTACTGGGCCACGCAGCCCTGCCAG
GCCCAGTCCAACAAGCCGTGCCTGTCATCTGTGACCAGTGTGCAGTTACT
GCGGCAGGTGCTGGATGATCCGGGCCTGTGCGGCGCGGGAATCAGCTTCA
CCCTTGATCCCGAGGACCCAAGCCAGCCCCTGGGCCCCTACTTCCGGAAG
AACTTCCACCCCGCCGCCTGCGCTGACCTCTGGTACGACCTGCTCCCTGG
GGCGGTCATGTTCGAGGCCGACTGGGACCTGAAGCTCCTGCTGCACGACG
TGGACGGCCGGGCGCAGGGCCTTGGCCCCTGGTACCGGTCTATCGAGGCT
CTGAGCCGCGCCTTCCCCCCCCCCTCGGGGCCGAGGTGCTGGGCAAGGTC
TGGCTGGTGGCGGAGACCCTGGAAGTGGAAGAGTCGGCGCACGGCATCGC
CTTCGGGAAGGTGGCCCTGCGCATGCGGGCTGCGGCCGTCCGCCGGGACC
CGGGCGCCCCCTCGGGCCTCGCCGAGGCCGGCCCCCCCGCCCCGGCCCTG
GCCGCCTTCGTCCGCGTCGCGAACCAGCACATGGAGGAGCTCGTCGAGCA
CGTTCCCTCCTTCCAGTACCTAGAGCAGCTAGTCGTCGCCCAGGAGGCCG
CCCGGTTCCTGGCGGCGCGGCGGATTTCTCTGCCGGTCCCGGCCGGTCTC
GCCGCTCTGCGCTCCCCCCTGAGCGGCCGCCACCGGGTCCCGGCCCTGCA
CTTGGAACGGACGCGGGTGCTCAGCTATGCGGGCGTCGTGCTGGTGGACC
GGTTGGACATGTCCCTGCTGCGCTTGGGCGAGGACGTGGCCCTGGGTCCC
GGGAGCCGGGCGCTGCTGGAGGGCCTGCCCGAGCAAAGAGGGGGCCGCGG
TCGCGTCCGCCGCTTCGCCTGCGGCCTTCGCAACGGCAGCACGCACGACC
TGCAGAACCTGCATCAGCTCTTTGCGAGCAACGTATCCTTGGAGTGCCGA
CGTGAGATGAGTTGGGCCGAGCACATGGCTGGAGAAAGAACCTCGGCGGA
GGAGGGGGAGCGAGAGCAGGCGCCGGAGGAGGCCGCTGAATACGAAGCTT
GTCCTGAGGCCCTGGCATTCTGGTCCACAGAGGCGGAGGAATGGAGGGTA
TGGGCCAGTGAGACTCTGCGGAAGGCCCGAAGGGCCCCTGGTGGCAATGG
AAACGAGGGGCGGGGGAAAAGGGTGGGCGAGGAGGAGGGGAAGGGGGAAG
GGGACGACGGGGCTGGGCGGGAGGAGGAGAAGGAGGTGGGCGGAGAGGAG
CAGACAATTTCGGAGGAGATATGCGCGGAGATCCAGGGAGTAGAGGACGG
AAAAGAGAGTGGGCTTGGACAAGAAGGGGAGCACAAGGAAGAGGAGGAGG
AGGAAAAGGTGGAGGGCGAGGAGAAGGTTGAGTACGAAGCAGCGAGTCTG
GCAGAGACAGTTGCATACAACGTAACTGGCAGGGTGCTGATCCTGGGTCG
AGTGGATTGGGCGGATGAGGATGACTGCAGGGAGGATCCAACCTTTTCGA
AGAAGGAGGAGGGCATGGAGGAAGAGGAGGGGAGGGTGCTTTTGGCGATG
GAAAACCAAAGCGGTTTGACCGAAGCGATCGCGCTCCACGAGCCTGTGGG
TGTTCTGCTTGTCCAGTTGGAGGAAATGAGGCAGCGGCGACGGCGGGATA
CGAGTAAGCCTAAGGGAGGGAAGGAGGAGAGGAGGAGGGGCAGCGCCCCA
AGGCAGAAGGGCGTGGAGGATGACGGGCTGTATCCCACCCTCCCGCCCGG
CCTGCCCGTTCGGTTCATATCTGAGGATGTGGCCCGGGATATTCAAAAGG
CCGAATGCCGGCATGGAGTGTTGCATGTATGGTTAACGTGCGGGATGGAG
CGGGATCTGGGGTCAGGCCAGCAGGAGGAGGAGGAGAAGGAGGGCGGGGA
AGAGGAGGAACGGGGCGGGAAGCGCTCCCTGGTGCACGAGGGAGCGCTCT
ACCGGACCTTGGACGCCGTCCTAGTCGACGCCGAGCATACCGGGTGCCAA
GAACAGGATCTGCCCCTCCCAGAGGGCTTCGAGATAGCGCCTGCCTCACC
TGGGGTGGTAGAGGCGGTGGTGCGACAGCACAGGTGGGGCACTAGCTCCC
TCCTCCTCCAGGCCACCGAGGGCGGGGGCGAGGGGCCGGGGGAGCGGCTG
CAGGTGCCCCCAGCCTTTGCTTCCCTCGCCACGGCGGCGCTGTTTGGTCA
GGGAGGCCGGGCGATGGAGACGGGGGACCTGGTCGTCCGGGCCAGTGAGG
GCTCCGGTCCGCCGCGCTATCGGCCCCGGCAATGCGACGCCCGCATCCTC
ATCCGCACGGCCGTCTGCACCGTCAGTTACGGTGGCTACTCATACCGCGT
GCTGGAGTCTGGCGTGCCCGTAGACCTGCTGGAGGTGCCGGGCGCGCCTG
CTGTCTTCGAAGGACTGCGCGGCCTCCAGCTGCCCGAGGGATGGGAGTTG
TCGCCCGTGAACCGGGGTATCGCGCAGAGGGTGGTGGGCGCGCACGCATG
GGGGACTGACGCGCTGATCCTGGCCGACGGTAAGGGGTATCCCACTCTGC
TCTATTTCCACCGCCGATCCCAACAGCAGAAAGAGCAGCAGCGACAAGAG
GGAGAGGGCCGGGCTCCTCTCGCCCCGCATCACCGGATCTTGATCCGACG
GCGGGATTCGGACCAGGGTGGCGACGTGGCGCCCGAAGAGGCTGGCGAAG
GAGAAGAAAAGGGCGGGGAGGGAGACCTGCGCATGGGAGACATGTACCGC
GCTGATGCGAATGCCGTGCTCGAGTTCAGGAGGCTCGCGAGGGAGGGCGG
GGGTTACCTGCTTGAAATAGAGGTGAGCGAGCGGGTCATGATCCACGGAG
GGGTGGATCTGACGTCCGTGAGGCGCGTCAGCCGAGACGAGACGGCGGCT
GGGGGGCAGTGGCAGGGAGAAGGGGAGAAGAGTGTCTTGGCGGCTTTGGG
AAGGGACCTGGCAAGGGGTCAAGTCGGGGGAACGCTCTGGGAGGGGAACG
GCGCGTCCGCTAAGAGATGCGAGGTGTTTAGGACCACATAGAGTACATAA
ATCTGAAAGCAAATAATTCACAGACGCCAAG

protein sequence of rna7376

>rna7376-protein ID=rna7376-protein|Name=rna7376|organism=Nannochloropsis gaditana|type=polypeptide|length=746bp
MWNCGRLVKIHISLPWRTSGSVLYSRSLMSHGSTSATPVEGSPPSSKPFT
KLLIANRGEIACRIIRTARKMGIKTVAVYSDADARSQFVRMADEAHWIGP
SPTTESYLVKEKILEVAKRAGVQALHPGYGFLSENPDFAEMCQSAGVVFV
GPPVPALRSMGSKAAAKRIMTEAGVPVTPAYYGEEQDDARLLAEAEKVGY
PVMIKAVTGGGGKGMRRVMAAADFLPALEACRREALKSFGRDRMLIEKYL
VDPRHIELQVFGDRHGNAVHLHERDCSVQRRHQKVLEESPAPGLGEALRE
EMGRAAVLAAKAVGYTGAGTVEFLLDPASQRFYFCEMNTRLQVEHCVTEM
VTGVDLVEWQLRVAAGEPLPVREQADIRARGHAIEARIYAENPAKGFLPA
TGSLKRLRTPVSEEGAVRVETGVVEGDEVSMYYDPMIAKLLTWAPSRPEA
LRRMARGLRDYQIAGLPNNLEFLERCVGHPAFERGGVTTGFLVEYEADVS
IPPPSPPSPHLLALAAYALTQQREAPRGSTPWLGGAWRGVGRRRLPVEFV
VDGLEESFALKAGVMDGGVQEGGGGGRHAWGLRVEMPDGQAYRVSGSRCE
GERASGAHGDEWEATVEGVTYKYSAWIEDGGMRGGARVQLWLRSGGLVDD
PLQRTTFSLRVPAAALGHELAGGVMPRILAPMPGKLVKVLVKAGEAVRKG
QSLLILEAMKMEHVITAPQDATVDSVARAVGDVVQEGIPLVSLKAA

mRNA from alignment at CM002471.1:446660..448900+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7376 ID=rna7376|Name=rna7376|organism=Nannochloropsis gaditana|type=mRNA|length=2241bp|location=Sequence derived from alignment at CM002471.1:446660..448900+ (Nannochloropsis gaditana)
ATGTGGAACTGTGGGAGGCTGGTAAAAATACACATTTCATTACCATGGAG
GACATCAGGATCAGTGTTGTATTCCCGGAGTTTGATGTCACACGGCAGCA
CGTCTGCAACGCCTGTTGAGGGgtcccctccatcttcgaAGCCCTTCACC
AAGCTCCTTATAGCCAATCGCGGCGAGATTGCATGCCGCATCATTCGCAC
GGCCCGAAAAATGGGCATCAAGACTGTTGCTGTGTACAGTGATGCCGATG
CCCGGTCGCAGTTCGTCCGGATGGCCGACGAGGCGCACTGGATCGGACCC
TCGCCTACCACCGAGTCCTACCTAGTCAAGGAAAAAATCCTCGAGGTGGC
GAAGCGGGCAGGCGTCCAAGCCCTGCATCCGGGCTATGGTTTCCTCTCAG
AAAACCCAGACTTTGCGGAAATGTGCCAGTCCGCGGGCGTGGTGTTTGTG
GGTCCTCCAGTGCCAGCCCTGCGCTCCATGGGGTCGAAGGCGGCAGCCAA
GCGGATCATGACCGAGGCGGGGGTGCCCGTGACGCCGGCCTACTACggag
aagagcaggacgATGCGCGcttgctggcggaggcggagaaggtaGGTTAC
CCGGTGATGATCAAGGCGGTgacggggggcgggggcaagggcaTGCGCAG
GGtcatggcggcggccgatttccttcccgccctggagGCCTGTCGCCGCG
AGGCGCTCAAGTCCTTCGGGCGGGACAGGATGCTGATCGAGAAGTACCTG
GTGGACCCGCGGCATATCGAGCTGCAGGTGTTCGGAGACCGGCACGGGAA
TGCGGTGCACCTGCACGAGAGAGACTGCTCGGTGCAACGCCGACACCAGA
AGGTGCTCGAGGAGTCCCCGGCGCCTGGCCTCGGGGAGGCgctcagggag
gagatggggagggccGCCGTCCTAGCTGCCAAGGCGGTCGGGTACACGGG
CGCGGGCACCGTGGAGTTTCTCTTGGACCCCGCCTCGCAGCGCTTCTACT
TCTGCGAGATGAACACGCGCCTGCAGGTGGAGCACTGCGTGACTGAGATG
GTCACCGGGGTCGACCTGGTCGAGTGGCAGCTCCGAgtggcggcgggcga
gcCCCTGCCCGTGCGGGAGCAAGCGGATATCCGGGCGCGGGGCCACGCCA
TCGAGGCTCGCATCTACGCGGAGAACCCGGCCAAGGGCTTCTTACCGGCC
ACGGGCTCCCTCAAGCGGCTGCGGACGCCGgtgtcggaggagggggcggt
gcgcgtggagacgggcgtggtggagggggacgaagtGAGCATGTACTACG
ACCCGATGATCGCCAAGCTACTGACCTGggcgccctcccgcccggaGGCC
CTTCGGCGCATGGCCCGCGGCCTGCGCGACTACCAGATCGCAGGACTGCC
CAACAACCTCGAGTTTCTCGAGCGCTGCGTCGGGCATCCGGCCTTCGAGC
GCGGCGGTGTGACCACCGGCTTCCTGGTCGAGTACGAGGCGGACGTGTCc
atcccaccgccctccccgccctccccccacctgtTGGCCCTCGCCGCCTA
CGCCTTGACGCAGCAGCGAGAGGCACCGCGGGGGAGCACGCCTTGGCTGG
GGGGCGCATGGCGGGGCGTGGGAAGACGGAGGTTGCCCGTGGAATTCGTC
GTGGACGGGCTTGAGGAGTCCTTTGCCTTGAAGGCGGGCGTAATGGACGG
AGgcgtgcaggagggggggggcggggggaggcacgCGTGGGGCCTGCGGG
TGGAGATGCCTGACGGGCAGGCTTATCGGGTGTCGGGGTCCCGTtgcgaa
ggagaaagggcgaGCGGGGCTCACGGCGACGAATGGGAGGCCACGGTCGA
GGGTGTCACATACAAGTACAGCGCCTGGATAGAGGACGGCGGGATGCGAG
GCGGCGCGAGGGTACAGCTGTGGCTCCGGAGTGGCGGCCTCGTGGACGAT
CCTTTGCAGCGgaccaccttctccctgcgGGTACCGGCCGCGGCGCTGGG
GCACGagctggcggggggggtcATGCCGCGAATCCTGGCGCCCATGCCGG
GAAAGCTCGTGAAGGTGTTGGTCAAGGCCGGCGAGGCGGTGCGGAAGGGG
CAGTCCTTGCTCATCCTGGAGGCCATGAAGATGGAGCACGTGATCACGGC
CCCACAGGACGCCACCGTTGACTCGGTGGCACGGGCAGTGGGCGATGTAG
TGCAGGAGGGGATCCCCTTGGTCAGCCTGAAGGCGGCGTAG

Coding sequence (CDS) from alignment at CM002471.1:446660..448900+

>rna7376 ID=rna7376|Name=rna7376|organism=Nannochloropsis gaditana|type=CDS|length=2241bp|location=Sequence derived from alignment at CM002471.1:446660..448900+ (Nannochloropsis gaditana)
ATGTGGAACTGTGGGAGGCTGGTAAAAATACACATTTCATTACCATGGAG
GACATCAGGATCAGTGTTGTATTCCCGGAGTTTGATGTCACACGGCAGCA
CGTCTGCAACGCCTGTTGAGGGgtcccctccatcttcgaAGCCCTTCACC
AAGCTCCTTATAGCCAATCGCGGCGAGATTGCATGCCGCATCATTCGCAC
GGCCCGAAAAATGGGCATCAAGACTGTTGCTGTGTACAGTGATGCCGATG
CCCGGTCGCAGTTCGTCCGGATGGCCGACGAGGCGCACTGGATCGGACCC
TCGCCTACCACCGAGTCCTACCTAGTCAAGGAAAAAATCCTCGAGGTGGC
GAAGCGGGCAGGCGTCCAAGCCCTGCATCCGGGCTATGGTTTCCTCTCAG
AAAACCCAGACTTTGCGGAAATGTGCCAGTCCGCGGGCGTGGTGTTTGTG
GGTCCTCCAGTGCCAGCCCTGCGCTCCATGGGGTCGAAGGCGGCAGCCAA
GCGGATCATGACCGAGGCGGGGGTGCCCGTGACGCCGGCCTACTACggag
aagagcaggacgATGCGCGcttgctggcggaggcggagaaggtaGGTTAC
CCGGTGATGATCAAGGCGGTgacggggggcgggggcaagggcaTGCGCAG
GGtcatggcggcggccgatttccttcccgccctggagGCCTGTCGCCGCG
AGGCGCTCAAGTCCTTCGGGCGGGACAGGATGCTGATCGAGAAGTACCTG
GTGGACCCGCGGCATATCGAGCTGCAGGTGTTCGGAGACCGGCACGGGAA
TGCGGTGCACCTGCACGAGAGAGACTGCTCGGTGCAACGCCGACACCAGA
AGGTGCTCGAGGAGTCCCCGGCGCCTGGCCTCGGGGAGGCgctcagggag
gagatggggagggccGCCGTCCTAGCTGCCAAGGCGGTCGGGTACACGGG
CGCGGGCACCGTGGAGTTTCTCTTGGACCCCGCCTCGCAGCGCTTCTACT
TCTGCGAGATGAACACGCGCCTGCAGGTGGAGCACTGCGTGACTGAGATG
GTCACCGGGGTCGACCTGGTCGAGTGGCAGCTCCGAgtggcggcgggcga
gcCCCTGCCCGTGCGGGAGCAAGCGGATATCCGGGCGCGGGGCCACGCCA
TCGAGGCTCGCATCTACGCGGAGAACCCGGCCAAGGGCTTCTTACCGGCC
ACGGGCTCCCTCAAGCGGCTGCGGACGCCGgtgtcggaggagggggcggt
gcgcgtggagacgggcgtggtggagggggacgaagtGAGCATGTACTACG
ACCCGATGATCGCCAAGCTACTGACCTGggcgccctcccgcccggaGGCC
CTTCGGCGCATGGCCCGCGGCCTGCGCGACTACCAGATCGCAGGACTGCC
CAACAACCTCGAGTTTCTCGAGCGCTGCGTCGGGCATCCGGCCTTCGAGC
GCGGCGGTGTGACCACCGGCTTCCTGGTCGAGTACGAGGCGGACGTGTCc
atcccaccgccctccccgccctccccccacctgtTGGCCCTCGCCGCCTA
CGCCTTGACGCAGCAGCGAGAGGCACCGCGGGGGAGCACGCCTTGGCTGG
GGGGCGCATGGCGGGGCGTGGGAAGACGGAGGTTGCCCGTGGAATTCGTC
GTGGACGGGCTTGAGGAGTCCTTTGCCTTGAAGGCGGGCGTAATGGACGG
AGgcgtgcaggagggggggggcggggggaggcacgCGTGGGGCCTGCGGG
TGGAGATGCCTGACGGGCAGGCTTATCGGGTGTCGGGGTCCCGTtgcgaa
ggagaaagggcgaGCGGGGCTCACGGCGACGAATGGGAGGCCACGGTCGA
GGGTGTCACATACAAGTACAGCGCCTGGATAGAGGACGGCGGGATGCGAG
GCGGCGCGAGGGTACAGCTGTGGCTCCGGAGTGGCGGCCTCGTGGACGAT
CCTTTGCAGCGgaccaccttctccctgcgGGTACCGGCCGCGGCGCTGGG
GCACGagctggcggggggggtcATGCCGCGAATCCTGGCGCCCATGCCGG
GAAAGCTCGTGAAGGTGTTGGTCAAGGCCGGCGAGGCGGTGCGGAAGGGG
CAGTCCTTGCTCATCCTGGAGGCCATGAAGATGGAGCACGTGATCACGGC
CCCACAGGACGCCACCGTTGACTCGGTGGCACGGGCAGTGGGCGATGTAG
TGCAGGAGGGGATCCCCTTGGTCAGCCTGAAGGCGGCGTAG

Synonyms

Publications