rna737, rna737 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna737
Unique Name	rna737
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1130
Alignment location	CM002456.1:290394..291896 +

Link to JBrowse

Properties


Property Name	Value
Product	cyclin-dependent kinase 10
Orig transcript id	gnl\|cribi\|Naga_100351g6.7477.mrna
Orig protein id	gnl\|cribi\|Naga_100351g6.7477
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:290394..291896 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100351g6	gene706	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna737	rna737-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29936.1	cds737	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:290394..291896+
coding sequence from alignment at CM002456.1:290394..291896+

mRNA sequence

>rna737 ID=rna737|Name=rna737|organism=Nannochloropsis gaditana|type=mRNA|length=1130bp
GCCGCATCGCAAGCTGCTCTTGGACGGGTCAACGGAGAGCCGATTACCAG
GGGCACAAGCAGCTTTGACTGTTTTTAGGGCAGGAGGAGGAGGAAGCGGT
AGCAACAGGGAGAGGGAGGCACAGCACAACCAGAATTCAACGCCTACGGC
TGAAAGGGAAGCCTCCAGCAACAACAACAACAACAACAACAACGCCAGGA
CAATAGAGAGGGAAGGTGGACAAGCCCCTCGGGGACAAAACGGCCATGGT
GGGACGGGGAATGACGAGGACGATGAAGAAGCGAGGGAAGAGCCCCCGTG
GACTCTGGGCCATCTTTTTCCTGGTCCTGGCTCTGGCCTCTTTGGCCTCC
TTAGTTTCATTGACCTATCAACGTATCCGCGATCGGGGGGTGCTAACCTA
CCTACCTGCTTCCACGCAACGCTTATTGATGCACACCTCTTTGCTCGACT
GGCTCTTGGACTCCTCCTTGGCGGATCGCTTGAAGCCGTACGCGGTGATG
AGCCTGGGATTGAACGAGGAGGAACGGGCGTTCCTTATTAACAGCTTACC
ACCCGCAGAACAGCGTGCTTTGACCGCACCCGGAATCCTCCACGTCCTGC
CACCACCTGTTCAAGCCTTCCTGTTGCCAAGACCGATGGGCAACAGAGGA
GGGAGGGAGGGAGGCAGGGAGTGTGGGCATGGGAGAGGAGGCGGAGGAGA
CAGAAGGCGCGTGGAGGAAGTGAGCGAGGCGGAGGCTGCCACTTTAACCC
GTCGCCGATGGCAGGAAATGGAGCGTCGGCAAGTGGAAGGGGGAGCAAGG
CGAAGGGGGGAGGAAGAAGGGGAAGATGAAGAGGAAGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAAACCACGGCGTCGGAGACGAGCGAGGAGGGGG
ATGAAGAGGGGGGGGGCAGCACCCGGGAAGGGGCTGGCGTATAGGGACCT
TGCCTGGGCGTGTGGGCACGTGGGTGGAGAGGCATGAGGCGGAGGAGGAA
AGTCCTCGCCACGCCCTCGGGGAGGAAGGGAGGTCAGGGGAGCACTTGGC
GCCCGTGGACGTGGACGAGGCGGTGGCGATGGTCATGCGCCGACGCCTCC
ATCGGGTGTGGGAAGACGCCGCCCACCGGG

protein sequence of rna737

>rna737-protein ID=rna737-protein|Name=rna737|organism=Nannochloropsis gaditana|type=polypeptide|length=404bp
MAASPVQSKHEISEAGEADLYGACRPVKSFQKLNQIGEGAYGTVYRGIDK
ANGRMVALKRVILHNEKQDGFPLTSLREIRTLKLIGRHPHCVRLEEIAVG
RKRDGVFLVFEYCEHDMAHLIDHMNTRFTSSEVKNLLLQLLRGVAHLHEL
WIIHRDIKMSNLLYTNAGRLKLADFGLARLYGAPPAPMTPKVVTLWYRAP
ELLLGSETYDVSIDMWAVGCIFGELLEYKPLLPGGDELEQLKKIFELLGS
PNERIWPGVESLPHVASGMVSLRPDRYPYNTVAARLPRLSEGGVDLLNSF
LAYDPQKRLNATDAQRHAFFTNERPLPKEDSLMPTFPSRHDEMEAREKER
ARLSEGQKSSTAMLLKSALFSSSSASRKGLGGREGLKTSGGTIMPVVKKA
KHDG

mRNA from alignment at CM002456.1:290394..291896+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna737 ID=rna737|Name=rna737|organism=Nannochloropsis gaditana|type=mRNA|length=1503bp|location=Sequence derived from alignment at CM002456.1:290394..291896+ (Nannochloropsis gaditana)
ATGGCAGCCTCCCCAGTTCAGTCCAAGCATGAAATCAGTGAAGCTGGGGA
GGCAGATTTATATGGCGCTTGCCGTCCTGTGAAGAGTTTCCAAAAGCTTA
ATCAAATCGGGGAAGGAGCGTATGGTACTGTGTATCGTGGCATCGATAAA
GCAAACGGACGCATGGTGGCCTTAAAGCGTGTGATTCTACATAACGAGAA
GCAAGATGGATTCCCCTTGACGTCCTTGAGGGAAATTCGTACGCTTAAAT
TGATAGGTCGTCACCCTCATTGCGTCCGATTGGAAGAGATAGCAgtgggg
agaaaaagagacggTGTCTTCTTGGTCTTTGAATACTGCGAGGTGAGGCA
GTTTCTTCTCCCAGTTCGTGTTGCAAATTTACCATGCATTTGGTGATAGG
TTCTTCTTGCACGTGAAAGTACCGCGTCATCTATTGATGTGCTCCTTTTT
ATCACCCTGTTTTTCCACTCTTCAATCCTCATCCTCGACGCTTTTTAGCA
CGATATGGCGCACCTGATAGACCACATGAATACGCGCTTCACATCTTCCG
AGGTCAAGAACCTCCTGTTGCAGCTTCTGCGTGGCGTGGCACATTTGCAC
GAGCTATGGATCATCCATCGTGACATCAAAATGAGCAATTTGCTCTACAC
CAACGCAGGTCTGAAAAACAATTGTGCACCTTGCGCGGGATAGCAGGCCC
AAGACGACAGTGTTAGGGGCAAGAGCTCAATGCGTATCATTGCAAGACTT
GCGTTCTCATTCCCACTTCGGCCCATGTACACAAATTCAGGCCGGCTCAA
GCTCGCCGACTTTGGACTTGCTCGTTTATACGgtgcccctcccgctccta
TGACCCCCAAGGTGGTCACTCTGTGGTACAGGGCCCCTGAGCTATTGCTG
GGGTCGGAGACCTACGACGTGTCTATTGACATGTGGGCCGTGGGGTGCAT
TTTCGGGGAGCTCTTGGAATACAAGCCCCTGTTGCCCGGCGGAGACGAAC
TGGAGCAACTCAAAAAGATCTTTGAGCTGCTGGGGAGCCCAAATGAGCGG
ATCTGGCCGGGTGTGGAGTCCCTGCCTCACGTAGCTTCGGGAATGGTCTC
GCTGCGTCCGGACAGGTACCCCTACAATACAGTGGCCGCGCGCCTCCCGC
GTTTGAGCGAAGGCGGCGTGGACTTGCTCAATTCTTTCTTGGCATATGAC
CCACAAAAGCGGTTGAATGCCACGGATGCTCAGAGACACGCCTTCTTTAC
GAACGAGCGGCCATTGCCTAAGGAAGACTCTTTGATGCCTACGTTTCCGT
CCCGTCATGATGAGATGGAAgccagagaaaaggaaagagctCGGCTTTCA
GAGGGTCAAAAGTCTTCCACTGCCATGTTGCTCAAGAGTGCTTTattttc
ttcgtcctccgcgtCTAGAAagggactgggaggaagagaagggttGAAGA
CCTCAGGGGGAACCATTATGCCGGTAGTGAAGAAGGCTAAGCATGACGGA
TGA

Coding sequence (CDS) from alignment at CM002456.1:290394..291896+

>rna737 ID=rna737|Name=rna737|organism=Nannochloropsis gaditana|type=CDS|length=3645bp|location=Sequence derived from alignment at CM002456.1:290394..291896+ (Nannochloropsis gaditana)
ATGGCAGCCTCCCCAGTTCAGTCCAAGCATGAAATCAGTGAAGCTGGGGA
GGCAGATTTATATGGCGCTTGCCGTCCTGTGAAGAGTTTCCAAAAGCTTA
ATCAAATCGGGGAAGGAGCGTATGGTACTGTGTATCGTGGCATCGATAAA
GCAAACGGACGCATGGTGGCCTTAAAGCGTGTGATTCTACATAACGAGAA
GCAAGATGGATTCCCCTTGACGTCCTTGAGGGAAATTCGTACGCTTAAAT
TGATAGGTCGTCACCCTCATTGCGTCCGATTGGAAGAGATAGCAgtgggg
agaaaaagagacggTGTCTTCTTGGTCTTTGAATACTGCGAGCACGATAT
GGCGCACCTGATAGACCACATGAATACGCGCTTCACATCTTCCGAGGTCA
AGAACCTCCTGTTGCAGCTTCTGCGTGGCGTGGCACATTTGCACGAGCTA
TGGATCATCCATCGTGACATCAAAATGAGCAATTTGCTCTACACCAACGC
AGGCCGGCTCAAGCTCGCCGACTTTGGACTTGCTCGTTTATACGgtgccc
ctcccgctcctaTGACCCCCAAGGTGGTCACTCTGTGGTACAGGGCCCCT
GAGCTATTGCTGGGGTCGGAGACCTACGACGTGTCTATTGACATGTGGGC
CGTGGGGTGCATTTTCGGGGAGCTCTTGGAATACAAGCCCCTGTTGCCCG
GCGGAGACGAACTGGAGCAACTCAAAAAGATCTTTGAGCTGCTGGGGAGC
CCAAATGAGCGGATCTGGCCGGGTGTGGAGTCCCTGCCTCACGTAGCTTC
GGGAATGGTCTCGCTGCGTCCGGACAGGTACCCCTACAATACAGTGGCCG
CGCGCCTCCCGCGTTTGAGCGAAGGCGGCGTGGACTTGCTCAATTCTTTC
TTGGCATATGACCCACAAAAGCGGTTGAATGCCACGGATGCTCAGAGACA
CGCCTTCTTTACGAACGAGCGGCCATTGCCTAAGGAAGACTCTTTGATGC
CTACGTTTCCGTCCCGTCATGATGAGATGGAAgccagagaaaaggaaaga
gctCGGCTTTCAGAGGGTCAAAAGTCTTCCACTGCCATGTTGCTCAAGAG
TGCTTTattttcttcgtcctccgcgtCTAGAAagggactgggaggaagag
aagggttGAAGACCTCAGGGGGAACCATTATGCCGGTAGTGAAGAAGGCT
AAGCATGACGGATGAATGGCAGCCTCCCCAGTTCAGTCCAAGCATGAAAT
CAGTGAAGCTGGGGAGGCAGATTTATATGGCGCTTGCCGTCCTGTGAAGA
GTTTCCAAAAGCTTAATCAAATCGGGGAAGGAGCGTATGGTACTGTGTAT
CGTGGCATCGATAAAGCAAACGGACGCATGGTGGCCTTAAAGCGTGTGAT
TCTACATAACGAGAAGCAAGATGGATTCCCCTTGACGTCCTTGAGGGAAA
TTCGTACGCTTAAATTGATAGGTCGTCACCCTCATTGCGTCCGATTGGAA
GAGATAGCAgtggggagaaaaagagacggTGTCTTCTTGGTCTTTGAATA
CTGCGAGCACGATATGGCGCACCTGATAGACCACATGAATACGCGCTTCA
CATCTTCCGAGGTCAAGAACCTCCTGTTGCAGCTTCTGCGTGGCGTGGCA
CATTTGCACGAGCTATGGATCATCCATCGTGACATCAAAATGAGCAATTT
GCTCTACACCAACGCAGGCCGGCTCAAGCTCGCCGACTTTGGACTTGCTC
GTTTATACGgtgcccctcccgctcctaTGACCCCCAAGGTGGTCACTCTG
TGGTACAGGGCCCCTGAGCTATTGCTGGGGTCGGAGACCTACGACGTGTC
TATTGACATGTGGGCCGTGGGGTGCATTTTCGGGGAGCTCTTGGAATACA
AGCCCCTGTTGCCCGGCGGAGACGAACTGGAGCAACTCAAAAAGATCTTT
GAGCTGCTGGGGAGCCCAAATGAGCGGATCTGGCCGGGTGTGGAGTCCCT
GCCTCACGTAGCTTCGGGAATGGTCTCGCTGCGTCCGGACAGGTACCCCT
ACAATACAGTGGCCGCGCGCCTCCCGCGTTTGAGCGAAGGCGGCGTGGAC
TTGCTCAATTCTTTCTTGGCATATGACCCACAAAAGCGGTTGAATGCCAC
GGATGCTCAGAGACACGCCTTCTTTACGAACGAGCGGCCATTGCCTAAGG
AAGACTCTTTGATGCCTACGTTTCCGTCCCGTCATGATGAGATGGAAgcc
agagaaaaggaaagagctCGGCTTTCAGAGGGTCAAAAGTCTTCCACTGC
CATGTTGCTCAAGAGTGCTTTattttcttcgtcctccgcgtCTAGAAagg
gactgggaggaagagaagggttGAAGACCTCAGGGGGAACCATTATGCCG
GTAGTGAAGAAGGCTAAGCATGACGGATGAATGGCAGCCTCCCCAGTTCA
GTCCAAGCATGAAATCAGTGAAGCTGGGGAGGCAGATTTATATGGCGCTT
GCCGTCCTGTGAAGAGTTTCCAAAAGCTTAATCAAATCGGGGAAGGAGCG
TATGGTACTGTGTATCGTGGCATCGATAAAGCAAACGGACGCATGGTGGC
CTTAAAGCGTGTGATTCTACATAACGAGAAGCAAGATGGATTCCCCTTGA
CGTCCTTGAGGGAAATTCGTACGCTTAAATTGATAGGTCGTCACCCTCAT
TGCGTCCGATTGGAAGAGATAGCAgtggggagaaaaagagacggTGTCTT
CTTGGTCTTTGAATACTGCGAGCACGATATGGCGCACCTGATAGACCACA
TGAATACGCGCTTCACATCTTCCGAGGTCAAGAACCTCCTGTTGCAGCTT
CTGCGTGGCGTGGCACATTTGCACGAGCTATGGATCATCCATCGTGACAT
CAAAATGAGCAATTTGCTCTACACCAACGCAGGCCGGCTCAAGCTCGCCG
ACTTTGGACTTGCTCGTTTATACGgtgcccctcccgctcctaTGACCCCC
AAGGTGGTCACTCTGTGGTACAGGGCCCCTGAGCTATTGCTGGGGTCGGA
GACCTACGACGTGTCTATTGACATGTGGGCCGTGGGGTGCATTTTCGGGG
AGCTCTTGGAATACAAGCCCCTGTTGCCCGGCGGAGACGAACTGGAGCAA
CTCAAAAAGATCTTTGAGCTGCTGGGGAGCCCAAATGAGCGGATCTGGCC
GGGTGTGGAGTCCCTGCCTCACGTAGCTTCGGGAATGGTCTCGCTGCGTC
CGGACAGGTACCCCTACAATACAGTGGCCGCGCGCCTCCCGCGTTTGAGC
GAAGGCGGCGTGGACTTGCTCAATTCTTTCTTGGCATATGACCCACAAAA
GCGGTTGAATGCCACGGATGCTCAGAGACACGCCTTCTTTACGAACGAGC
GGCCATTGCCTAAGGAAGACTCTTTGATGCCTACGTTTCCGTCCCGTCAT
GATGAGATGGAAgccagagaaaaggaaagagctCGGCTTTCAGAGGGTCA
AAAGTCTTCCACTGCCATGTTGCTCAAGAGTGCTTTattttcttcgtcct
ccgcgtCTAGAAagggactgggaggaagagaagggttGAAGACCTCAGGG
GGAACCATTATGCCGGTAGTGAAGAAGGCTAAGCATGACGGATGA

Synonyms

Publications