rna7368, rna7368 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7368
Unique Name	rna7368
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2494
Alignment location	CM002471.1:430916..433153 +

Link to JBrowse

Properties


Property Name	Value
Product	group xv phospholipase a2
Orig transcript id	gnl\|cribi\|Naga_100053g23.5074.mrna
Orig protein id	gnl\|cribi\|Naga_100053g23.5074
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:430916..433153 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100053g23	gene7130	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7368	rna7368-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23334.1	cds7351	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:430916..433153+
coding sequence from alignment at CM002471.1:430916..433153+

mRNA sequence

>rna7368 ID=rna7368|Name=rna7368|organism=Nannochloropsis gaditana|type=mRNA|length=2494bp
AGGGAAATTTCACATTTATGCGCGGATAGCTTTCCATGAGACCGCCTACC
GACCTAAATTCCTTCCTTCTTTCTCTCCCCCTACAGGTTTCCTCACATGT
CGTCTCCACGTCGAAGAAGCCCCCAAAAAAGTGTCACCAGTGGAAGCAGC
ACCCCGAAAGACGTAGCTGTTGATGTCCCTGCTCGAGCACTTCCCGAATA
TGCAGTCGTCACTCATGCCGAAGAAGAGACAAAGGATCAGAAATTGTCTC
CCCTTGGCCTGACGGCGACGCCCTCGGAGAAAGCTGTGGGTTTTTTGACT
GAGTTGCCTTCTTCTGGCACTTCTCCCTTCGACCCAGAATTAGGTCCCAA
AGTTCTGAGCCCACAACGCGCGAAGTCCTCGGTCTTGCAAACCACAGGAG
TGGAAATTGCTTTTCACCAGTTAAGCTTGACCGCCACCTACGTGAGCAAG
AACATGAAGCGAAAGACTCGGCGCATCCTCAAAAATATCAGCGGCATCAC
ACCGCGTGGCTCCTGTACAGCGCTGATGGGTCCTTCGGGATGCGGCAAGA
CCTCGTTGCTGCACACTTTGGCCGGCAAGAATGCGAAGTCGAAAATCTCG
GGCCACATCCTTGTGGACGGAAAGGCTCGTGAGGAAGGCTTCAGCGCCAA
AATCGGATACGTGGAGCAAGACGACCAGCTCATGGGAGTCATGTCTGTCC
GGGAAAACATCCAGTTCTCAGCGGAGCTACGGCTGCCCGTTTCCATCTCC
AAAAACGAGAAGAGATGCCGCGTGGAGGACACAATCGAGTTGCTCGGGCT
CTGGAAATGCGCCAATTCCAAGATCGGAACGGAAATGATCAGGGGCGTTT
CTGGTGGGGAGCGAAAGCGGTGCTCCATTGCCATGGAGCTAGTTGTGGAT
CCGGCCGTCATATTCTTGGACGAGCCCACATCAGGACTCGACGCTTTTAC
CGCTCACAAGGTGGTGGAGATTCTCTCTGACCTGGCCTCCCACGGAAAGA
CCGTCATCCTCTCCATCCACCAACCGCGCTACACCGTGTTCAAGCTCTTC
GACGTCCTCATGCTGCTCGCAGAGGGCGAGATGGTGTACCAGGGGCCTGC
CGCCAAGGGAGCGGAGTACTTCGCGCAGATAGGCTTCCAGTGTGAGCCCT
TTAACAACCCCAGCGACTTCTTCATGGACGTCGTCTGCGACCAGGTTCGG
CGGTTGGACAGACAGATCTCGTACGGCGGCTCGGTGCATGTCCAGGAGAT
GGGCTTCCTCGCCCGCTCCTTCAAGAACTCAGCGGAGGGCAAGGCGATAA
ATGGCGAGTGCGAAGCCCGAGTGCTTGACAGCGGCGTGGCCGTGGACGCC
TCGCGAAGGATGGACAAGCACGTGCGCCACTACGCCACGGGCTTTCTGCA
TCAGTTCCGGACAATCAGTCGCCGCGTCTTCCTTGCCGTAATGCGCAACC
CAGCCACGAGCATCTTCCAGGTCCTCTCCTTCCTCGCCTCGGCGGTGCTT
CTGGGCGCCTTCTTCTATGGTCGGTTGGACGGAGGGCCCACTGCCATGCA
GGCCCACATCGGCGCCATGTTCATGGTCGCTTACATGATCATCTTCTCAG
CCATCACGTCCCTCGAGCTCTTCATCCAGGAGCGCGCCCTCTTCGTGCAC
GAGAAGACAAGCGGCTTCTACAGGACCAGCGCCTACTTCCTTGCCAAGGT
CGTCTGCGAGATCCTGCCCACTCGCATGGTCCCCACGCTCTTCTACGCCG
TCGTCACCGCCTATATGGCCGGCCTGCGCACTGACTTCTACCACCTCTCA
TTGTACTGGCTGACGCTCACAGTCACAAGCATTACGTCCACCTCTCTCTG
CCTTCTGGTCTCGTGCGCCACCTCCGTGTACTCGGCCGCCTTTATGGGGT
GCGGGGCTTTCTACATCGTCTTCATGTTGGCCTCGGGCTTCGTTCTGCAG
GCGGATCAGATCCCTGTCTACTTGGCGCCCTTCAAGTACCTCAGCTTTTA
CCGATACTGCCTTCAAAACCTTCTAGCCCTCGACCTTCATAATCGTGTCT
TCGACTGTCCAACTCCCGAAGAACTTATGGCAGACCCAACGCTAGTGTCC
ATCTGCCTTCCCACGGGTGATTTGTACCTACAGAGCCAAGGCATCAATCC
TGACAATATCTGGAAAAACATTGGGATACTTGCTGCCATGACTCCTGCCT
ACCTCTTCATTGCCTACCTTTTCTTGCGATCGCTGAAAAAAACCACGTAA
AGAACAAGAAAAAGGAGAAATGTGTTCGCCGCGTGCTAAATAGCTGAAAT
GAGACTGAATGTTTCAATCTTGGGTGCCTATTCTGCCTGGGCCTGTGTGT
CCTTGCGAGTAGACCCTTTATACGATAGGAGGTATGATGCAGCGCAAACG
TAGTAACAGTTAAGCGCCAGCTAAATGTCACATTAAATCATTGTACTAAA
CATACACTATTACAAGAAGAAAGTTACGTATTTCCGCAGTGACC

protein sequence of rna7368

>rna7368-protein ID=rna7368-protein|Name=rna7368|organism=Nannochloropsis gaditana|type=polypeptide|length=587bp
MISFFWSEVKDLGHTGLGGLYMWGQWPLPPLPQRAPSPQFSMPQYIESRR
RHRTILRREDKRCWKKLVPPIFMLMLCAIGAQGQHQGHRALQWDQQAEDN
PPLYRQGAPTGEATGNDAPSKPKTALNHGPAPPETDPLYLSRAQAVRESP
GRDPVVVLNGLGGAGLKFRLRGAKPTRSYCRSWYARWHTAWILPRVLIPP
VARCLMEFLTPVYDAEAGTFDSKPGVEVKVDGFGQIISLENLGPSMLPLR
NFDYIHGFINFMMTELGYGPGLDLFAAPYDWRYSPDVLKEQGYFRDLRAL
VETAYVTAGKRRVHLMGHSLGGVVALAFLNEMPLEWKRRYIKSYLPVGSP
FAGTVVNVMGACSGYNLGLPLAPSDLRDFEAQAPSGPWLFPQPSLWPPDE
ILVRTPNQSYTAHDYERLLTDLGLGEASLPVYRHVAPLYLETLVPPGIDV
HVIHSQGNPTIASLVYNQSFNGSMAEIPSPPVLIYGPGDGTVPERSLMRP
FFEWSPDESWRMTHHVLEGVNHMDICNFRGFFRVLTDILGNHVDRTPAPE
AEALETAPDPWKTRLKSAWAPFQAAANYADEMVFGPS

mRNA from alignment at CM002471.1:430916..433153+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7368 ID=rna7368|Name=rna7368|organism=Nannochloropsis gaditana|type=mRNA|length=2238bp|location=Sequence derived from alignment at CM002471.1:430916..433153+ (Nannochloropsis gaditana)
GGGAGCTGTGGGAGCCAAACAGCCCATAATGTAGGAGGATAGAAAATAAG
AAATTGAATTTATGGCATGAGGAACTTATATCTACCTAGCAGCAGCTGAG
GTATTAACTTGGGAACACCGAGACCGCGGCCCGTTCCCGGCACTTCAATG
GGCCagcgggagcgggggagagcgTCCTGTGCCTTCCTTCGGGTGCACGT
CCTCGTGTAAGCCACATCAATCTGTCATCGGAACTCATAATTTTTCATTA
ACAACATATGATCTCATTCTTCTGGAGTGAAGTGAAGGATTTGGGCCACA
CTGGTTTAGGTGGGTTATATATGTGGGGGCAatggcctctgcctcctctt
cctcaacgcGCCCCATCTCCCCAGTTCAGTATGCCCCAGTATATTGAATC
GCGCCGCCGACACCGCACGATCCTCAGAAGAGAGGACAAACGATGTTGGA
AAAAGCTGGTACCACCAATATTTATGTTGATGCTGTGTGCAATTGGGGCG
CAAGGACAGCACCAAGGTCACAGGGCGCTCCAATGGGACCAGCAGGCAGA
AGACAACCCCCCTTTATATAGGCAAGGTGCCCCGACAGGCGAAGCAACGG
GGAATGACGCTCCCTCTAAGCCCAAAACCGCTCTAAATCACGGCCCCGCA
CCACCCGAAACGGATCCGCTCTACTTATCTCGCGCCCAAGCCGTCCGTGA
GTCCCCGGGTCGGGACCCTGTCGTAGTGCTGAACGGGCTGGGTGGTGCAG
GTTTGAAGTTCCGGCTCCGTGGAGCCAAGCCGACACGTAGCTATTGCCGC
TCTTGGTACGCCCGCTGGCATACTGCTTGGATTCTACCTCGCGTGCTGAT
TCCCCCCGTGGCCCGATGTCTGATGGAGTTCCTGACGCCGGTCTACGACG
CCGAGGCTGGCACCTTCGACAGCAAGCCTGGGGTGGAGGTCAAGGTGGAT
GGCTTCGGCCAGATTATCAGCCTGGAGAATCTAGGACCTTCCATGCTACC
ACTGCGCAATTTCGACTACATCCACGGCTTCATAAATTTCATGATGACGG
AGCTAGGCTACGGACCCGGGCTCGATCTCTTCGCGGCGCCTTACGACTGG
CGGTACTCTCCGGACGTCCTCAAAGAGCAGGTGAGTTCCATGCATGCGCT
AAGGGGGGTGCTTGTCAGATTTGTCCTTTGGTAAATCGTGTGCTTGCGTT
AAGTCCCAGCTTGTTGGCTTTGCTGACTTCGTAGCGACCTCTCCGACAGG
GCTATTTCCGGGACCTGCGGGCCCTGGTCGAGACGGCCTACGTGACGGCG
GGGAAGCGGCGCGTGCATTTGATGGGTCACTCCCTTGGAGGTGTTGTGGC
CCTGGCCTTCCTGAACGAGATGCCTCTCGAGTGGAAGCGGCGGTACATCA
AGTCCTACTTGCCCGTGGGCAGCCCCTTCGCGGGCACAGTCGTGAACGTC
ATGGGGGCCTGCTCGGGCTACAACCTGGGCCTGCCTTTGGCACCCTCGGA
TCTCCGGGACTTCGAGGCTCAggctccctccggcccctggCTCTttcccc
agccctccctctggccGCCCGACGAAATCCTTGTCCGCACCCCCAACCAG
TCCTACACGGCGCACGACTACGAGCGCCTCCTGACCGACCTGGGGCTGGG
CGAGGCCTCCCTACCTGTCTACCGCCACGTGGCTCCGCTATACCTGGAGA
CGCTTGTGCCGCCGGGCATTGACGTGCACGTGATCCACTCTCAGGGCAAC
CccaccatcgcctccctcgtctaCAACCAAAGTTTCAACGGGAGTATGGC
CGagattccctccccgcctgtgCTCATTTACGGCCCTGGCGATGGAACGG
TACCGGAGCGGAGCCTCATGCGCCCATTCTTTGAGTGGAGCCCCGACGAG
AGCTGGCGCATGACGCATCACGTGCTGGAGGGAGTGAACCACATGGACAT
ATGCAATTTCCGGGGGTTCTTCCGCGTCCTCACCGACATCCTCGGCAACC
ACGTGGACCGCACACCGGCCCCAGAAgcagaggccttggagacaGCGCCC
GATCCCTGGAAGACGCGCCTAAAGTCCGCCTGGGCTCCCTTTCAGGCTGC
CGCCAACTACGCGGACGAGATGGTCTTCGGGCCTTCTTAAGGCCCGCCTT
CGTAAATCAATGAAAATAGGGTTTGAAATATATATAAACAAATAGAGACG
AGAAGGGATGCAAGCGTGAATGCAAAAATTACTTTTCC

Coding sequence (CDS) from alignment at CM002471.1:430916..433153+

>rna7368 ID=rna7368|Name=rna7368|organism=Nannochloropsis gaditana|type=CDS|length=3528bp|location=Sequence derived from alignment at CM002471.1:430916..433153+ (Nannochloropsis gaditana)
ATGATCTCATTCTTCTGGAGTGAAGTGAAGGATTTGGGCCACACTGGTTT
AGGTGGGTTATATATGTGGGGGCAatggcctctgcctcctcttcctcaac
gcGCCCCATCTCCCCAGTTCAGTATGCCCCAGTATATTGAATCGCGCCGC
CGACACCGCACGATCCTCAGAAGAGAGGACAAACGATGTTGGAAAAAGCT
GGTACCACCAATATTTATGTTGATGCTGTGTGCAATTGGGGCGCAAGGAC
AGCACCAAGGTCACAGGGCGCTCCAATGGGACCAGCAGGCAGAAGACAAC
CCCCCTTTATATAGGCAAGGTGCCCCGACAGGCGAAGCAACGGGGAATGA
CGCTCCCTCTAAGCCCAAAACCGCTCTAAATCACGGCCCCGCACCACCCG
AAACGGATCCGCTCTACTTATCTCGCGCCCAAGCCGTCCGTGAGTCCCCG
GGTCGGGACCCTGTCGTAGTGCTGAACGGGCTGGGTGGTGCAGGTTTGAA
GTTCCGGCTCCGTGGAGCCAAGCCGACACGTAGCTATTGCCGCTCTTGGT
ACGCCCGCTGGCATACTGCTTGGATTCTACCTCGCGTGCTGATTCCCCCC
GTGGCCCGATGTCTGATGGAGTTCCTGACGCCGGTCTACGACGCCGAGGC
TGGCACCTTCGACAGCAAGCCTGGGGTGGAGGTCAAGGTGGATGGCTTCG
GCCAGATTATCAGCCTGGAGAATCTAGGACCTTCCATGCTACCACTGCGC
AATTTCGACTACATCCACGGCTTCATAAATTTCATGATGACGGAGCTAGG
CTACGGACCCGGGCTCGATCTCTTCGCGGCGCCTTACGACTGGCGGTACT
CTCCGGACGTCCTCAAAGAGCAGGGCTATTTCCGGGACCTGCGGGCCCTG
GTCGAGACGGCCTACGTGACGGCGGGGAAGCGGCGCGTGCATTTGATGGG
TCACTCCCTTGGAGGTGTTGTGGCCCTGGCCTTCCTGAACGAGATGCCTC
TCGAGTGGAAGCGGCGGTACATCAAGTCCTACTTGCCCGTGGGCAGCCCC
TTCGCGGGCACAGTCGTGAACGTCATGGGGGCCTGCTCGGGCTACAACCT
GGGCCTGCCTTTGGCACCCTCGGATCTCCGGGACTTCGAGGCTCAggctc
cctccggcccctggCTCTttccccagccctccctctggccGCCCGACGAA
ATCCTTGTCCGCACCCCCAACCAGTCCTACACGGCGCACGACTACGAGCG
CCTCCTGACCGACCTGGGGCTGGGCGAGGCCTCCCTACCTGTCTACCGCC
ACGTGGCTCCGCTATACCTGGAGACGCTTGTGCCGCCGGGCATTGACGTG
CACGTGATCCACTCTCAGGGCAACCccaccatcgcctccctcgtctaCAA
CCAAAGTTTCAACGGGAGTATGGCCGagattccctccccgcctgtgCTCA
TTTACGGCCCTGGCGATGGAACGGTACCGGAGCGGAGCCTCATGCGCCCA
TTCTTTGAGTGGAGCCCCGACGAGAGCTGGCGCATGACGCATCACGTGCT
GGAGGGAGTGAACCACATGGACATATGCAATTTCCGGGGGTTCTTCCGCG
TCCTCACCGACATCCTCGGCAACCACGTGGACCGCACACCGGCCCCAGAA
gcagaggccttggagacaGCGCCCGATCCCTGGAAGACGCGCCTAAAGTC
CGCCTGGGCTCCCTTTCAGGCTGCCGCCAACTACGCGGACGAGATGGTCT
TCGGGCCTTCTTAAATGATCTCATTCTTCTGGAGTGAAGTGAAGGATTTG
GGCCACACTGGTTTAGGTGGGTTATATATGTGGGGGCAatggcctctgcc
tcctcttcctcaacgcGCCCCATCTCCCCAGTTCAGTATGCCCCAGTATA
TTGAATCGCGCCGCCGACACCGCACGATCCTCAGAAGAGAGGACAAACGA
TGTTGGAAAAAGCTGGTACCACCAATATTTATGTTGATGCTGTGTGCAAT
TGGGGCGCAAGGACAGCACCAAGGTCACAGGGCGCTCCAATGGGACCAGC
AGGCAGAAGACAACCCCCCTTTATATAGGCAAGGTGCCCCGACAGGCGAA
GCAACGGGGAATGACGCTCCCTCTAAGCCCAAAACCGCTCTAAATCACGG
CCCCGCACCACCCGAAACGGATCCGCTCTACTTATCTCGCGCCCAAGCCG
TCCGTGAGTCCCCGGGTCGGGACCCTGTCGTAGTGCTGAACGGGCTGGGT
GGTGCAGGTTTGAAGTTCCGGCTCCGTGGAGCCAAGCCGACACGTAGCTA
TTGCCGCTCTTGGTACGCCCGCTGGCATACTGCTTGGATTCTACCTCGCG
TGCTGATTCCCCCCGTGGCCCGATGTCTGATGGAGTTCCTGACGCCGGTC
TACGACGCCGAGGCTGGCACCTTCGACAGCAAGCCTGGGGTGGAGGTCAA
GGTGGATGGCTTCGGCCAGATTATCAGCCTGGAGAATCTAGGACCTTCCA
TGCTACCACTGCGCAATTTCGACTACATCCACGGCTTCATAAATTTCATG
ATGACGGAGCTAGGCTACGGACCCGGGCTCGATCTCTTCGCGGCGCCTTA
CGACTGGCGGTACTCTCCGGACGTCCTCAAAGAGCAGGGCTATTTCCGGG
ACCTGCGGGCCCTGGTCGAGACGGCCTACGTGACGGCGGGGAAGCGGCGC
GTGCATTTGATGGGTCACTCCCTTGGAGGTGTTGTGGCCCTGGCCTTCCT
GAACGAGATGCCTCTCGAGTGGAAGCGGCGGTACATCAAGTCCTACTTGC
CCGTGGGCAGCCCCTTCGCGGGCACAGTCGTGAACGTCATGGGGGCCTGC
TCGGGCTACAACCTGGGCCTGCCTTTGGCACCCTCGGATCTCCGGGACTT
CGAGGCTCAggctccctccggcccctggCTCTttccccagccctccctct
ggccGCCCGACGAAATCCTTGTCCGCACCCCCAACCAGTCCTACACGGCG
CACGACTACGAGCGCCTCCTGACCGACCTGGGGCTGGGCGAGGCCTCCCT
ACCTGTCTACCGCCACGTGGCTCCGCTATACCTGGAGACGCTTGTGCCGC
CGGGCATTGACGTGCACGTGATCCACTCTCAGGGCAACCccaccatcgcc
tccctcgtctaCAACCAAAGTTTCAACGGGAGTATGGCCGagattccctc
cccgcctgtgCTCATTTACGGCCCTGGCGATGGAACGGTACCGGAGCGGA
GCCTCATGCGCCCATTCTTTGAGTGGAGCCCCGACGAGAGCTGGCGCATG
ACGCATCACGTGCTGGAGGGAGTGAACCACATGGACATATGCAATTTCCG
GGGGTTCTTCCGCGTCCTCACCGACATCCTCGGCAACCACGTGGACCGCA
CACCGGCCCCAGAAgcagaggccttggagacaGCGCCCGATCCCTGGAAG
ACGCGCCTAAAGTCCGCCTGGGCTCCCTTTCAGGCTGCCGCCAACTACGC
GGACGAGATGGTCTTCGGGCCTTCTTAA

Synonyms

Publications