rna7361, rna7361 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7361
Unique Name	rna7361
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2548
Alignment location	CM002471.1:416421..417272 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100053g16.5065.mrna
Orig protein id	gnl\|cribi\|Naga_100053g16.5065
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:416421..417272 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100053g16	gene7124	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7361	rna7361-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23325.1	cds7344	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:416421..417272-
coding sequence from alignment at CM002471.1:416421..417272-

mRNA sequence

>rna7361 ID=rna7361|Name=rna7361|organism=Nannochloropsis gaditana|type=mRNA|length=2548bp
CCTAGTTGAATCTCCTTTTTAACAAATATTCTACCACTTCATGCTAATTT
GCACGGTATGCCATTGCAGAAGCAGGATGCACACAAATCCCCTCTCCAGC
AAAAGCGTTGCTCCTTCCTTCTCCGCAGTGTCTTACACCTAACACCGAAA
ATGCCTTAAATGCGTCTTTTAATTTTAATTGTCCTCGTAGTTCCTTCGCG
TGGTATTCATTCTAGCCATTAAATGCCTGAAAGGCTTGGCTTCGAGGGAA
TACTTGGTTGAAGGTAGAAAACGACAAGACAGACGTCATGCGTGTCATTT
TAAGGACGATGAGAACTATTCCGTAAAGCCACCTAGATTCAGTTTGTCTC
GTTCCTTTTTATAGCGTATCTACAGGGGCAATCCGTGCGAAAGGATGGGT
AATGCGCAAGGCATGGTCAAATCCTCTGCGACACGTCAAATTGCGGATAA
GCAACAAGAGCGAAAGCCCACCGTAGGTCGCAAAGCCGTAAATACCGATG
GAAAAGTTGTTCAAATCGCTGCAGCAGCGGCTGTTATAGACAGTGACCAC
TGCAATCAACCGCGTTCGCACCAACAGCAGCGTACAGCTATCAAGGTCAC
CTCGGAGGCATCCAAACCTGCCGCCAAAGGTGGAGCCGGAGGCACTAGTC
CAGGACACAAAGTCACAGTTGCGTCCACTTCGGGCTCGAGTGGCTATGTG
ACAGCAGGAATCAGAGACATCAAGTCAAAGTACGATATAGACCCCCGAGA
GATTGGGCATGGCCACTATGGAGTTGTTCGCAAAGCAAAAAACCGAGAGA
CAGGGGAAGCATTTGCCATCAAGTCTATCCGTAAGGCTAAAGTCAGTCGG
CTTGACTCATTGCGCCGAGAGATTGACATTTTACAGGCAGTTGATCACCC
GCAGATCATCAAGCTGGTGGACGTGTATGAAGATGACAAATTCTTACATT
TAGTGACGGAGCTTTGCACAGGCGGCGAGATGTTTGATCGCATCATCGCA
AAGACTAAGTCGGCTGAAGGTCACTATTCTGAGAAAGACGCTGCCGTTAT
CATGCGCAAGATTTTAGATGCCATTGATTACTGCCACACGGTGCATAATA
TCTGCCACCGTGACTTGAAGCCCGAAAACTTCCTCTTCAAAACCGAGGAC
CCCTCTGCTGAACTGAAAATAATTGACTTCGGGCTTTCTCGCTTCGAGGA
CGACCAAAAATACATGACCACTCGCGTGGGAACACCTTACTACATTGCAC
CTGAGGTGTTAAATCGCATGTATGACAAGTCTTGCGATCTGTGGTCCATC
GGCGTCATTATGTACATCCTGCTTTGTGGCTACCCTCCCTTCTACGGTGA
TACTGACGCCGATATTTTCGCATCGGTGCGGCGCGCCGAGTTCACTTTTC
CAAGCCCGGAGTGGGACGACATTTCCCCCAGCGCCAAGGATCTCATCCGC
AAATTGCTGAGTAAAGACCCGCGAAAACGACCTTCGGCTGCCGCTGCTTT
GAATCACGAGTGGTTTCAGGTATTAAAAAAGGACGGAGAGATTACACAGG
CCCTGACAGAGCACCTTCGCAACAGCCTACGTCGGTTCATCGGCATGAAT
AAGCTCAAGCGCGTTGCCCTGACGATCATCGCCGAGCAGGTGGCGGAGGC
CGACGTGGCGCACGTGCAGAAAGCCTTCGAGGCTCTGGACACGAATAAAG
ACGGCGTGATTACCGTGGCTGAGTTGCAGCAGGCGGCCGAGCAGGAGGGC
CTTACTAATGTAAAGGAGCAGGTCGCGCGCCTCATGCACGGGGTGGACGT
GAACGAGAACACCGCCATCGACTACAACGAGTTCCTCGCAGCGACGATGG
AGCGCTCTGTGTACGTGCGTGACGAACACATCCGGCGTGCCTTTCAGCAT
TTTGATCAGGACATGGACGGACACATCACCGTGCAAGACCTGGTGGAGGC
GCTCGGCACGGAGGAGAACGCGCGTGAGGTGCTTGGCGATATCGATCGCA
ACGGAGATGGCGTTATCAGCTTGGATGAGTTTAAAAACATGATGGAGGCG
GCTGGCAGCTCCTCTTTCTCGCGTCACCTCGACGGCAAGTAGAGGCGCTG
CACAATCCCAGCGGCCGCTTTCGCGCATTTATGCCCGGTAGTGTGCCTTG
CCTATGGGGTCGAAAGGACATCGACAGGCGCAATCATGATTTAGGCCTGG
GGGCGAAAATGAGGTGAAAGAGCGAGCATACGGAGGAGCAAGAGTGTGCC
TTGCCTATGGGGTCGAAAGGACATCGACAGGCGAAATCATGATTTAGGCC
TGGGGGCGAAAATGAGGTGAAAGAGCGAGCATACGGAGGAGCAAGAGGGA
ACTATCACGACACCTAATAAAAAGCAGAGTTTCCTCAGTACTTATGTGTG
CAAATGAGAGACAATTACACCTCTATCGAGACACTTATCATAGTAAAAGT
CAAATACATTTTGAATCTAGAAGATACGACCGTCTCATTTATTTCGGGTA
GTATACTAGCCTTTTATCCACACCGATTTATGCTTTGAAATTCATCCT

protein sequence of rna7361

>rna7361-protein ID=rna7361-protein|Name=rna7361|organism=Nannochloropsis gaditana|type=polypeptide|length=183bp
MGQTYRSVERSHFCTLTVQSVQSYHLCDIPAQCLLIKQRAQSIFFLMLNY
LEVSISFLCNQAKFQMLTHVSANLGANTSTNLHFRDSCLASFHSSMHGRT
CLGCAFVISTVIHASGKTMESPAKMGTRHQILSHLPKTYRNSSVARQETI
EQVGEDKDLIPTEVRKEIFADIDREFNREAVPI

mRNA from alignment at CM002471.1:416421..417272-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7361 ID=rna7361|Name=rna7361|organism=Nannochloropsis gaditana|type=mRNA|length=852bp|location=Sequence derived from alignment at CM002471.1:416421..417272- (Nannochloropsis gaditana)
ATGGGACGTCAAGCCCGCAAGAAAACTTCGAACTGAGAACTGGCCTATGG
AGGACGTCAGTGACGCATCCAATACCATTTTTTTTCACTTTACGAGGCGT
TGAATTTTCCTTCTACTTGCCGATAACATAGAAACATATCGAAGTGTAGA
ACGGAGCCATTTCTGTACTTTAACAGTGCAAAGTGTGCAATCATATCATT
TGTGTGATATTCCCGCACAGTGCCTCCTCATTAAGCAGAGAGCTCAAAGC
ATTTTCTTTCTCATGTTAAATTACTTGGAAGTTTCCATCTCCTTTCTCTG
TAATCAAGCGAAGTTTCAAATGTTGACCCACGTGAGTGCGAATTTAGGGG
CCAATACGTCATAACATGGTAATGGCAAACGATTTGCCACTGTCCAGAGT
GAGGTCTCCTTGTTATTTGTTTCAGTCGTGATTTGCTCAGAAGTCTTTAT
CTAAAGTGATTCCACATTTAGAAGCACAAATCTTCATTTCAGGGACAGCT
GCTTGGCTTCTTTCCACTCCTCGATGCACGGTCGGACTTGCCTTGGATGT
GCCTTTGTGATTAGCACAGTTATTCATGCGTCGGGGAAAACTATGGAAAG
TCCTGGTGAAATACATCACTCTGGACGATATTTGAATGGACTAAAAAATA
ATCGGGATGCGAGGTAGCGAAAATGGGGACGCGACATCAAATTTTGTCCC
ATCTGCCTAAAACATATAGAAATAGCAGTGTTGCTAGGCAGGAGACCATT
GAACAAGTAGGGGAGGATAAAGATCTCATCCCTACTGAAGTTCGCAAGGA
GATATTTGCGGACATCGATCGAGAGTTCAATCGCGAAGCAGTACCCATTT
AA

Coding sequence (CDS) from alignment at CM002471.1:416421..417272-

>rna7361 ID=rna7361|Name=rna7361|organism=Nannochloropsis gaditana|type=CDS|length=2208bp|location=Sequence derived from alignment at CM002471.1:416421..417272- (Nannochloropsis gaditana)
CGAAAATGGGGACGCGACATCAAATTTTGTCCCATCTGCCTAAAACATAT
AGAAATAGCAGTGTTGCTAGGCAGGAGACCATTGAACAAGTAGGGGAGGA
TAAAGATCTCATCCCTACTGAAGTTCGCAAGGAGATATTTGCGGACATCG
ATCGAGAGTTCAATCGCGAAGCAGTACCCATTTAAAAGCACAAATCTTCA
TTTCAGGGACAGCTGCTTGGCTTCTTTCCACTCCTCGATGCACGGTCGGA
CTTGCCTTGGATGTGCCTTTGTGATTAGCACAGTTATTCATGCGTCGGGG
AAAACTATGGAAAGTCCTGAAACATATCGAAGTGTAGAACGGAGCCATTT
CTGTACTTTAACAGTGCAAAGTGTGCAATCATATCATTTGTGTGATATTC
CCGCACAGTGCCTCCTCATTAAGCAGAGAGCTCAAAGCATTTTCTTTCTC
ATGTTAAATTACTTGGAAGTTTCCATCTCCTTTCTCTGTAATCAAGCGAA
GTTTCAAATGTTGACCCACGTGAGTGCGAATTTAGGGGCCAATACATGGG
ACCGAAAATGGGGACGCGACATCAAATTTTGTCCCATCTGCCTAAAACAT
ATAGAAATAGCAGTGTTGCTAGGCAGGAGACCATTGAACAAGTAGGGGAG
GATAAAGATCTCATCCCTACTGAAGTTCGCAAGGAGATATTTGCGGACAT
CGATCGAGAGTTCAATCGCGAAGCAGTACCCATTTAAAAGCACAAATCTT
CATTTCAGGGACAGCTGCTTGGCTTCTTTCCACTCCTCGATGCACGGTCG
GACTTGCCTTGGATGTGCCTTTGTGATTAGCACAGTTATTCATGCGTCGG
GGAAAACTATGGAAAGTCCTGAAACATATCGAAGTGTAGAACGGAGCCAT
TTCTGTACTTTAACAGTGCAAAGTGTGCAATCATATCATTTGTGTGATAT
TCCCGCACAGTGCCTCCTCATTAAGCAGAGAGCTCAAAGCATTTTCTTTC
TCATGTTAAATTACTTGGAAGTTTCCATCTCCTTTCTCTGTAATCAAGCG
AAGTTTCAAATGTTGACCCACGTGAGTGCGAATTTAGGGGCCAATACATG
GGACCGAAAATGGGGACGCGACATCAAATTTTGTCCCATCTGCCTAAAAC
ATATAGAAATAGCAGTGTTGCTAGGCAGGAGACCATTGAACAAGTAGGGG
AGGATAAAGATCTCATCCCTACTGAAGTTCGCAAGGAGATATTTGCGGAC
ATCGATCGAGAGTTCAATCGCGAAGCAGTACCCATTTAAAAGCACAAATC
TTCATTTCAGGGACAGCTGCTTGGCTTCTTTCCACTCCTCGATGCACGGT
CGGACTTGCCTTGGATGTGCCTTTGTGATTAGCACAGTTATTCATGCGTC
GGGGAAAACTATGGAAAGTCCTGAAACATATCGAAGTGTAGAACGGAGCC
ATTTCTGTACTTTAACAGTGCAAAGTGTGCAATCATATCATTTGTGTGAT
ATTCCCGCACAGTGCCTCCTCATTAAGCAGAGAGCTCAAAGCATTTTCTT
TCTCATGTTAAATTACTTGGAAGTTTCCATCTCCTTTCTCTGTAATCAAG
CGAAGTTTCAAATGTTGACCCACGTGAGTGCGAATTTAGGGGCCAATACA
TGGGACCGAAAATGGGGACGCGACATCAAATTTTGTCCCATCTGCCTAAA
ACATATAGAAATAGCAGTGTTGCTAGGCAGGAGACCATTGAACAAGTAGG
GGAGGATAAAGATCTCATCCCTACTGAAGTTCGCAAGGAGATATTTGCGG
ACATCGATCGAGAGTTCAATCGCGAAGCAGTACCCATTTAAAAGCACAAA
TCTTCATTTCAGGGACAGCTGCTTGGCTTCTTTCCACTCCTCGATGCACG
GTCGGACTTGCCTTGGATGTGCCTTTGTGATTAGCACAGTTATTCATGCG
TCGGGGAAAACTATGGAAAGTCCTGAAACATATCGAAGTGTAGAACGGAG
CCATTTCTGTACTTTAACAGTGCAAAGTGTGCAATCATATCATTTGTGTG
ATATTCCCGCACAGTGCCTCCTCATTAAGCAGAGAGCTCAAAGCATTTTC
TTTCTCATGTTAAATTACTTGGAAGTTTCCATCTCCTTTCTCTGTAATCA
AGCGAAGTTTCAAATGTTGACCCACGTGAGTGCGAATTTAGGGGCCAATA
CATGGGAC

Synonyms

Publications