rna7358, rna7358 (mRNA) Nannochloropsis gaditana

Overview
Namerna7358
Unique Namerna7358
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2810
Alignment locationCM002471.1:407999..408722 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100053g12.5054.mrna
Orig protein idgnl|cribi|Naga_100053g12.5054
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:407999..408722 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100053g12gene7121Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7358rna7358-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23314.1cds7341Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7358 ID=rna7358|Name=rna7358|organism=Nannochloropsis gaditana|type=mRNA|length=2810bp
ACCTCTCAAAAGTGAGGGTAGGTAGAGTCCTGCTCTATGAATGCTCACAT
AACACAAAGAGCATCGTTTAAAGCTTTCCTCGAGGCAGACTAGCCTCTCC
TCCAAGAATACTCTTGCACCTTTTCTTCTGATCGCATTCCTGATCGACCT
CGATTCCGCCAATACTCGTTGCTGCTTTTACTTCTGCGTTTGCTATAACC
CTTGCTATGCTGCGATGGCATTATGCAATCACAAAACCGTCTCCAGCACG
GACTCCTCGGAGGAGGGAGACGCTACCTTTCTCAGATCCCCTAAGACCTC
CGTACTACACCACCGACCCTATCGAAACGAGCCAGAGTGCCTTCACCTTC
ATGCATCCGTCCAACTTCAATGTAGTATTTCGTAGACAAAAAGGTTGTCG
TCACTCGATGATAGTAGGGTAGGTCTTATTCGGACTCCTCATATCAGATT
GCTTCGTCTCCAGGATGAAGATGATGCGCCAATAGGTAGGTCTGACGTGC
TGAGTCACGACTAAATCACTCGAAAGCGCCGCATGCTGAGAGCAGCGCTA
AATGGTTGCAGCAGCGGGGTGTCTGGCAAATCTCCTCCCCCCTTTCTGCA
ACAGACCTCGCTGTCTTAAGCCGCTCAGCGTGCCACTCCCAGTGGGCGAG
GCACCCTAGTAGCACGTGGCCTGGTCGCATTTCTTGGACAACGCTTTCTA
GTCAGCAGGCTATCACCCACAGCCTCTTATTGAAATAAAGTGAAGATTTC
CTCCTTCTCACAATCAAACACCTCACACAAGTCTGATTTCATAGGGACGC
GCGCGGGCTGAAGGGACAAGCGGGACATCGAAGAGCCGGATCTTCTCGTC
TCAGGGCTCTTGAATTGTATACGCTAGCAATCACGTGGGTGAAGGCTCCG
TTACACCACTACGGCCCTCGCTGGTCGAAAGTTTCTCATCACTCGATCCG
GGTTTGCCACGCGGCATCGCACGGAGACTGAGGAATCGGTTCTCGAGCTT
CACTCCCGCGAAGACCTGATCACCAGCCATGGGAGCGCACCTGCCAAAGA
GATGGTGGACACCAGAGGTGCGAGACGAAGTGAGCCATATTTGGAGCATC
CTCTGGCCAATTGCCGTGACCAATGCTCTCTTAATGGCGTTGCAAATCGA
GGATCAGATCATACTGGGGCGCATCGGCGTGGACGAGCTGGCGGCCTCGG
CCCTGGGAACCACCCTCTTCAATCTGGCCTGGTTTTTCTTGGCGGGAGCA
GCAAGCGCTGTCGATACCTTAGTGGCCCAAGCATTTGGCGCTCGTGACTA
TGAGGCATGTGAGTACTGGACACGGATTGGGTACTTGCTCATGACGCTCT
TCTCGCTGCCCGCCATGGTCATCTTCCAGTACGGGGAGTGGGTGGTGCGT
ACCGTCTTCCGCCAAGAAGAGCACCTCTCGCATTTAGCAGGACGCTACAC
GCAACTCCTTCTGCCCGGTCTGTGGCCCCTCTGCATGTTCGTGTGCATGC
AGAAGTCCATGCAGGCCCGGAACGTCCTGATGCCCTCCCTGTACGTGATG
CTCCTCGCGAACCTCATCAACGTCGGCGGCAATTACCTTTTCGTCTACGC
TCTGGGCATGGGTTTCACGGGCTCTCCCCTCGCCACCTCAACGAGCCGCA
TCCTGACATGCGCTCTGACCGGCGTGTACTACTACTCCGTGATGCCCAAG
ACGCGGCCCCGGGCCCTTCAAGGCCGGAGCTGCTCGGCGGACCTTCAGGG
GGAGGAGCCCGGCAGTATACTGACGGACCGCGACACGGACGGCCAAGTCT
GGGGGGCGGAAGTCCGGGGAGTCGGCGGGCCGGCATCCGGGTCCTTACAG
CAGCCTCTCCTTTCCGAGGTTGGGTACGCGTCGTCCTCCGAACCCCCTCC
CGAGCCTGCGGGAGGGGAGGCGTTCCCGGGCCGGACCCCCTTTCGAGAGG
CCCTCTGTCGCTTTTTGCGCCTGGCCATCCCTGGCGGCTTCATGGTGGGT
CTGGAGGCCTGGTCCTTCGACTTCACCACCTCCTTCGCAGCTCAGTTCGG
GACCGAAGCCCTGGACGCCCACCAGTCGATGATGTCCATCTCCGCCTTCA
CCTACCTGACCGTTCCATTGGCGATTTCTGTCGCAGCCTCCATTCGTGTG
GGCAACCTGCTGGGCGCGCAAAGACCGGAGCAGGCAAAGCTAGCGGCGCG
AATCTGTCTCTTCATCGGCGTGGCCACCATGCTTCTGTGCGGGCTAGTGC
TGGTTTTGCTGCGGGGCTCGTTGGGGGAGATCTTCACTCCCGACGCAAAG
GTGGCCAAGATCGTCTCTAAATTATGCCCGATCATGGCGCTGTATCAAGT
CTTCGATGGATTTCAGGGTGTTTCCGCTGGTATTCTCCGCGGGATGGGGC
GACAGACGCGTGTGGCCTTGCTCAATCTCGGAGGTTTTTGGGTGCTCGGA
TTGCCGGGCGGGGCGATCCTAGCATTCACGTTGAGAATGGGAGTGTACGG
CATATGGTGGGGTTTCGTTATGGGCCTGGCGCTCATTTCGATCCTGTACC
TTTGGGCCCTCTCCCGACTCGATTTCGAGGTGGAGGCCCGGCGTGCGCTG
CAAAGTGCGTGTACAGATCAGAAATTGGAGCACGCCTGGGAGCAAAGAGT
AGATCACGAGAAACAGGTCAAAAGAGAAGGTGGTATTGTAGCTGTGTAAA
GGTATTTCCTTTGTTATTTAAAGCGAAAAACGATGGTGACATGATAGTAT
AGGTAGATAAAGAAAATGCTGTACATTCGAGTGAGCAGAAAAGAAGCGCT
TAACGGACGG
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protein sequence of rna7358

>rna7358-protein ID=rna7358-protein|Name=rna7358|organism=Nannochloropsis gaditana|type=polypeptide|length=178bp
MHEGEGTLARFDRQRVLAESRSIRNAIRRKGARVFLEERLVCLEESFKRC
SLCYVSIHRAGLYLPSLLRGFDIWFALPYNRTCVRKASAMDEIRVLFNGL
HRQMLQAEKEYGMGETKAEQHIKAADAVVILGKYVVVCEHFAGRGVQKRG
NMALTIWQLWQLGSEALHLRKRQCVCFA
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mRNA from alignment at CM002471.1:407999..408722+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7358 ID=rna7358|Name=rna7358|organism=Nannochloropsis gaditana|type=mRNA|length=724bp|location=Sequence derived from alignment at CM002471.1:407999..408722+ (Nannochloropsis gaditana)
ATGCATGAAGGTGAAGGCACTCTGGCTCGTTTCGATAGGGTCGGTGGTGT
AGTACGGAGGTCTTAGGGGATCTGAGAAAGGTagcgtctccctcctccga
ggagTCCGTGCTGGAGACGGTTTTGTGATTGCATAATGCCATCGCAGCAT
AGCAAGGGTTATAGCAAACGCAGAAGTAAAAGCAGCAACGAGTATTGGCG
GAATCGAGGTCGATCAGGAATGCGATCAGAAGAAAAGGTGCAAGAGTatt
cttggaggagaggctAGTCTGCCTCGAGGAAAGCTTTAAACGATGCTCTT
TGTGTTATGTGAGCATTCATAGAGCAGGACTCTACCTACCCTCACTTTTG
AGAGGTTTTGATATTTGGTTCGCGCTACCTTACAATCGCACATGCGTACG
GAAGGCCTCGGCGATGGATGAAATTCGGGTCCTGTTCAATGGACTTCACA
GGCAAATGCTGCAAGCGGAAAAAGAATACGGAATGGGAGAAACGAAGGCT
GTGATGACGGCTCGTGAGCTAGTATTGGTGCCTCTTTAAAGGAACAGCAC
ATTAAAGCCGCTGATGCTGTTGTAATACTGGGAAAATACGTCGTCGTGTG
TGAACATTTTGCTGGAAGGGGCGTGCAAAAGCGCGGGAATATGGCCTTGA
CGATTTGGCAGCTGTGGCAATTAGGCAGCGAAGCTTTACATCTCCGGAAG
CGACAGTGTGTTTGTTTTGCGTGA
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Coding sequence (CDS) from alignment at CM002471.1:407999..408722+

>rna7358 ID=rna7358|Name=rna7358|organism=Nannochloropsis gaditana|type=CDS|length=1611bp|location=Sequence derived from alignment at CM002471.1:407999..408722+ (Nannochloropsis gaditana)
ATGCATGAAGGTGAAGGCACTCTGGCTCGTTTCGATAGGCAACGAGTATT
GGCGGAATCGAGGTCGATCAGGAATGCGATCAGAAGAAAAGGTGCAAGAG
TattcttggaggagaggctAGTCTGCCTCGAGGAAAGCTTTAAACGATGC
TCTTTGTGTTATGTGAGCATTCATAGAGCAGGACTCTACCTACCCTCACT
TTTGAGAGGTTTTGATATTTGGTTCGCGCTACCTTACAATCGCACATGCG
TACGGAAGGCCTCGGCGATGGATGAAATTCGGGTCCTGTTCAATGGACTT
CACAGGCAAATGCTGCAAGCGGAAAAAGAATACGGAATGGGAGAAACGAA
GGCTGAACAGCACATTAAAGCCGCTGATGCTGTTGTAATACTGGGAAAAT
ACGTCGTCGTGTGTGAACATTTTGCTGGAAGGGGCGTGCAAAAGCGCGGG
AATATGGCCTTGACGATTTGGCAGCTGTGGCAATTAGGCAGCGAAGCTTT
ACATCTCCGGAAGCGACAGTGTGTTTGTTTTGCGTGAATGCATGAAGGTG
AAGGCACTCTGGCTCGTTTCGATAGGCAACGAGTATTGGCGGAATCGAGG
TCGATCAGGAATGCGATCAGAAGAAAAGGTGCAAGAGTattcttggagga
gaggctAGTCTGCCTCGAGGAAAGCTTTAAACGATGCTCTTTGTGTTATG
TGAGCATTCATAGAGCAGGACTCTACCTACCCTCACTTTTGAGAGGTTTT
GATATTTGGTTCGCGCTACCTTACAATCGCACATGCGTACGGAAGGCCTC
GGCGATGGATGAAATTCGGGTCCTGTTCAATGGACTTCACAGGCAAATGC
TGCAAGCGGAAAAAGAATACGGAATGGGAGAAACGAAGGCTGAACAGCAC
ATTAAAGCCGCTGATGCTGTTGTAATACTGGGAAAATACGTCGTCGTGTG
TGAACATTTTGCTGGAAGGGGCGTGCAAAAGCGCGGGAATATGGCCTTGA
CGATTTGGCAGCTGTGGCAATTAGGCAGCGAAGCTTTACATCTCCGGAAG
CGACAGTGTGTTTGTTTTGCGTGAATGCATGAAGGTGAAGGCACTCTGGC
TCGTTTCGATAGGCAACGAGTATTGGCGGAATCGAGGTCGATCAGGAATG
CGATCAGAAGAAAAGGTGCAAGAGTattcttggaggagaggctAGTCTGC
CTCGAGGAAAGCTTTAAACGATGCTCTTTGTGTTATGTGAGCATTCATAG
AGCAGGACTCTACCTACCCTCACTTTTGAGAGGTTTTGATATTTGGTTCG
CGCTACCTTACAATCGCACATGCGTACGGAAGGCCTCGGCGATGGATGAA
ATTCGGGTCCTGTTCAATGGACTTCACAGGCAAATGCTGCAAGCGGAAAA
AGAATACGGAATGGGAGAAACGAAGGCTGAACAGCACATTAAAGCCGCTG
ATGCTGTTGTAATACTGGGAAAATACGTCGTCGTGTGTGAACATTTTGCT
GGAAGGGGCGTGCAAAAGCGCGGGAATATGGCCTTGACGATTTGGCAGCT
GTGGCAATTAGGCAGCGAAGCTTTACATCTCCGGAAGCGACAGTGTGTTT
GTTTTGCGTGA
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Synonyms
Publications