rna7326, rna7326 (mRNA) Nannochloropsis gaditana

Overview
Namerna7326
Unique Namerna7326
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3351
Alignment locationCM002471.1:336800..337637 -

Link to JBrowse

Properties
Property NameValue
Productdna-directed rna polymerases and iii subunit rpabc2
Orig transcript idgnl|cribi|Naga_100057g24.3917.mrna
Orig protein idgnl|cribi|Naga_100057g24.3917
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:336800..337637 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100057g24gene7091Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23358.1cds7309Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7326rna7326-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7326 ID=rna7326|Name=rna7326|organism=Nannochloropsis gaditana|type=mRNA|length=3351bp
ATGCAAAGGACGAGGCAAATGCATTCCCCCCGTTTGTTACTGTGGGTGCT
CTTGCTAGCGGCGGTAGGCTCCGGTGCGGTCGGCTGGGGCCGCCTGGCCT
TCGCTCCATCACTAGCATCTCGGCCGTCGTCGTGGCACTCGCGCTGGCAC
AAACGGCGGCTCGGTCCTGTTTTCTGGGACAGTGGAGCCAGTATCAGCCC
GAAAAGCAGGACCTGTATGTCGATTGCCCCGCATGGTCCTCGCGAGGCGT
CTCGTCCAGGAGTAGGGTCCCCGGGGGGACGAAGCCCCTTGGATTTTGGC
CCCCCCTTCCAGAAAGATGGAAACTTCCTCCGAGAGCATTCCCCGCGGCT
ACAGCAAGATACTAGGCAGGTTGCGGACAGTGCGACTCACCGACGCGAGC
CACGAGAAGAGGAGTCGCCATCCGCGCGGGCACCTCCCTCCTCAGTCTCA
CCCCCTCCCCCTCAGACCGCCGCCGCCAGCCAGCGGAAACCCTTCTCCCT
CAGCAAAGCCGTCCTCATGGGCCCCTTTGCCTTCGAGGCGTACACCGATC
CCCCCCGTACTTCCGGGTATTGGCAGTCGGGCCGCGACAAGAACGAAGTG
GCCATCCTGCACGAGGGCTTCCTCCGAGAAGCGTACGCCGGGAAGCTGCG
TGTCCGGGTGAAGGCCGTGACCGAGACGAGGGCCGAGGCGCAGGCGGTCT
TTCTTAAGGCGGCGGGCGCTCGGACGGAGGGACAGGGACCGAGTGGGAAG
GAAGGAGCGAGAGCGGGCGGCAGTGTTGGAAATCCGAGGGCCGAGATGCT
TGCGGTGTCGGTGGCGATGGAGATGGGGGAGGAGTTTGTGGGCTCTCAGA
TGGTGAGGCTGGAGCGCGTGGAGAGGGAGGAAGGAGGGGAGAGCAATGTG
TACGTACCTGTCCGGGGGGCCCTAGCCGGGAGGGAGACAGGGCTGGGAGG
AAGCGTGGGCGTGGCGGGGCTTGAGGACGCGGGCTTGGAGGCCTGGGTGC
CGGCGCCGCGGGCCCAGATGCAGGAGGGCGGGGAGACGCTGCTGCGGTTT
TCCTTGAGAGGCAAGGAGGAATGTTCGTTGGGCGTCGCTGAAGTCGACGT
GGCGGACTTGTTGGGGGGCTGTGGGAGGGAGGAAGGGGCCCGGTCCTGGG
AGCGAGACCTGCTCTTGACGGCGCCCGCGGGCAGGGGACACGGGGTGGAG
GGCGATGACCGAGGGGAGGACGCACGGCGGCGGCTGGCAGAGGCGGCTTC
GGGGGTGCGGGTAAGGGTTGAGATGGTGTTCACTCCCTTGGCAAGGCCGT
CGGTCTCGGCACCGTCCGCGTTGGAGGCCCCCGCCTGTGCAGAGATGGGG
GCAGGCGCCGACTCCGGCCTCGGGGTCTCTCAGGACGCGCGGGACGGAGG
AAGCGAGGAGGCGGGGGCCGGGGGAGGGGAGACGGAAAAGCGCGGGCGTG
AGAGGGAGAAGGGGAAAGGGAGGGAGTGGGTGGGCGCCCGAGGGTGTTCC
CGGGACTGGAGGGAGCTGGCGGAGGCCTTGGGAGGGGAGGCGGTGAGGGC
CGCGGACTTGGAGCTTCTGTGCTTCTTGGAGAACCGGGTCACGGACACCC
AGTTGAAAGTGTGGCGGGACCGGGCGGGGACGGGGGGAAGGAAACGCTTG
CTGGTGGCCTTCCGTGGGACGGAGTTCTGGAAGGTGAGGGACCTGATCAC
AGACATGAAGCTGTTGCAGGACCCCTGGGCGGTGCACGAGCTTGACAAGA
GGGAGGGCGGGAAGGAGGGCAGGAAGACGGAGGTGTCGCCTTTCCTGGCA
ACGGCTCAGGCCTCGCCGCAGGAATCGCGGGAGCAGGAGGGATCGCGGGA
GGCGCGGTGGTCGGAGGAGGGGCCGCAGGCAGAGACCGGAGAAGGGAGAA
GCGGCACCGGGACGGCCGCCTCCCGCTCCCCCACACCGGGTCTGGACTTC
TACGCGGCCTTGGCGACCCAGGCGAACCGGACGTACATGCTCTACAACGA
CATGGACCGGGCGGTGAAGGAGACGTTCGGCTATGTGTGGAGGAACACCC
CCTTCTTCGGGGCCCTTCCTCTCTCCGCCCCTGCCTCCCCTCCCCCCTCC
TTCCCTTTTTCCTCCCATGCTGCCCCGCAGCCCTTCTCCGGGTCGTCTTC
GACCAATACCTCTCCCCGTTCCGACCTCCCTCTCCACGCGCCCGGATGCC
CCTCCCCCCCTTCTCCCGCCCCCCTTCTCACGGCACCCGCCAAGAGCAAC
GAGGAGGCGATCACGAGCGTCCTCATGGCTGTCCTCGACCGAGTGATGGG
CAACAATCCTCTCGCCTCCTCCCCCTCCCTCCCGTCCTCGCCCCCCTCCT
CCTTCTTCGTCCAGCCCCTGTCAGGACAGGTGAGGAGCCCTTCCGACTTC
CGGGCAGCCTTCTACGGCCTGGCCTCGGACCTGGGGCGGCAGCTCTTTCC
CGCCTCTCCCTCGGCCTCACCCTCCCCGGCTGCGGGCGACGAGACGGACG
ACAAGAGGGAAAAGTCCCAGAAGAGTCCCTGCGATCCGGACGGGCGGGGG
AGGGGAGGGAATGGAGGAGTCGAGACGGGGGACCAGGCGGTCCTGGGCGT
AGTGGGGGAAGAGGTCAAGAGTCCGCTTCTCATGCTCCCGTCCCGCTTCA
AGGGCGTCTTCGCCACGCTCGTGGACGAAACCTTCCAGCTCATGGACAGC
CGCAGCTTCTTCCCCTCCTCCCCCCCCACGCTCCTGGCCCCCCGCCCTCC
CTCCCCCGCCGACCCCTCCGTCTTCCCAGAGGCAGACTTCCGTGCCTCTC
TCCTGCAGGGTCTGGACCAGGTCGTCAGCGGCCTGCAGAAGAAGCAGATC
GAGCAGTTGGCCGCCCCCACAACGCGCGCCCGCACCCTGTCTTCCCCCCC
TTCCTCACCTGCCCCCCCCCTTCCTTTCCCCCCCGCCTGGACGCCGCCTC
CTTCGGCGCCAGCGCCGAGGCTCGGGTCCACGCAGGCTTCAAAGAAGCCT
ATCTCTCTGTCCGTCCGCGCCTGCTGGCCCTCCTGGATGCGGCGACCCTG
GGGGCCTTGGAAGGAGGGCGGGCGGAGGATTGGGAGATCCTCCTCACGGG
CCATTCTCTGGGCGGGGCTTTGGCCTCCCTGTGTGCCCACGACTTGTCCT
CACGGTACGCAGGGCTCTCCCTGTCCATGTACAATTTTGGCACGCCCCGC
ATCGGGAACTCGGCCTTCGCCCGCGCCTACGAAGAGAGCAACGGCGATAG
CTACCGGCTCGTCAACGAGAACGACGCCTTCGCCCGCTTCCCTCGCAACC
TGCACCCGACGCTCTTCAACTACAAGCACGCGGGCACGACCGTCCTCTTG
A
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protein sequence of rna7326

>rna7326-protein ID=rna7326-protein|Name=rna7326|organism=Nannochloropsis gaditana|type=polypeptide|length=142bp
MSDNEADALYDNLMDEEEEDLLEEEAAQEEEEEQEGLPDRDEKEPIAILP
HDAADSTKANKVKITTRFLTKYERARILGTRALQISMNAPIMVKPGTETD
PLKIAMMELRARKIPIIIRRYLPDGSHEDWRIEELEIPGLEM
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mRNA from alignment at CM002471.1:336800..337637-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7326 ID=rna7326|Name=rna7326|organism=Nannochloropsis gaditana|type=mRNA|length=838bp|location=Sequence derived from alignment at CM002471.1:336800..337637- (Nannochloropsis gaditana)
CTCAAAACGCAACGCCACCACACACCTGCAGGGTCAAAGAACGCTCACGC
ATAAGGAAGACCATGAGTGACAATGAGGCCGATGCACTCTACGACAATTT
GATGGACGAGGAGGAGGAGGATCTATTAGAGGAGGAGGCAGCGCAGGAGG
AGGAAGAGGAGCAAGAGGGGCTTCCTGACCGTGATGAGAAGGAGCCTATT
GCCATCTTACCGCACGACGCTGCAGATTCTACTAAAGCGAACAAGGTCAA
GATTACAACGCGCTTTTTGACCAAATACGAACGTGCTCGGATCTTGGGAA
CACGGGCATTGCAGATCAGTATGAACGCTCCCATCATGGTCAAGCCGGGT
ACCGAGACGGATCCATTGAAGATAGCCATGATGGAGTTGCGTGCCCGCAA
AATTCCGATCATCATCCGCCGGTATTTGCCAGATGGGAGTCATGAAGATT
GGCGCATTGAAGAGCTGGAAATTCCTGGCTTGGAAATGTGAGGAGGAAAT
TTGAAGAGGTGTGAAGGGGCAAAAGCAAAGCGAGAGGGACACGTGCAGAG
ATTGGATTGGAAGGCAAAGGGTCTGCAATTAAACAAGAATGAGGAGTGTC
AACGAGCGCACGACACTCGTGGGACGCGTGTATAAAGGACAAAATACATT
GAGGCATGACCGGTTGTATGACCAAAGAAGAATATATTTTTTAAATTGTG
ACCCTTGCAAAGAGTCACCGGGACAAAAGAAACCACAAGAGAAATACGGT
TTCGAATCGCAAGGCTCCTTTTTTAAACTGAACACAGAAGCTTGCAGAAC
GCGTCGATATAAAGGTAAACACTTGAGATAGGTTTACG
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Coding sequence (CDS) from alignment at CM002471.1:336800..337637-

>rna7326 ID=rna7326|Name=rna7326|organism=Nannochloropsis gaditana|type=CDS|length=429bp|location=Sequence derived from alignment at CM002471.1:336800..337637- (Nannochloropsis gaditana)
ATGAGTGACAATGAGGCCGATGCACTCTACGACAATTTGATGGACGAGGA
GGAGGAGGATCTATTAGAGGAGGAGGCAGCGCAGGAGGAGGAAGAGGAGC
AAGAGGGGCTTCCTGACCGTGATGAGAAGGAGCCTATTGCCATCTTACCG
CACGACGCTGCAGATTCTACTAAAGCGAACAAGGTCAAGATTACAACGCG
CTTTTTGACCAAATACGAACGTGCTCGGATCTTGGGAACACGGGCATTGC
AGATCAGTATGAACGCTCCCATCATGGTCAAGCCGGGTACCGAGACGGAT
CCATTGAAGATAGCCATGATGGAGTTGCGTGCCCGCAAAATTCCGATCAT
CATCCGCCGGTATTTGCCAGATGGGAGTCATGAAGATTGGCGCATTGAAG
AGCTGGAAATTCCTGGCTTGGAAATGTGA
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Synonyms
Publications