rna7322, rna7322 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7322
Unique Name	rna7322
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2277
Alignment location	CM002471.1:325837..328065 -

Link to JBrowse

Properties


Property Name	Value
Product	dynamin-like protein
Orig transcript id	gnl\|cribi\|Naga_100057g28.3924.mrna
Orig protein id	gnl\|cribi\|Naga_100057g28.3924
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:325837..328065 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100057g28	gene7087	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23365.1	cds7305	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7322	rna7322-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:325837..328065-
coding sequence from alignment at CM002471.1:325837..328065-

mRNA sequence

>rna7322 ID=rna7322|Name=rna7322|organism=Nannochloropsis gaditana|type=mRNA|length=2277bp
ATGAGACAGCAAGTGTACTGTAAGATTGTATCATTCATACCAACAAAACT
TGAGGGTTGCCAAAGTGCCATGAGGTCGACAGGAGATTATCATGTCGGCA
TAAAAAGGACGCTTTGCACAGGCAGGATAACAAACGGGACAATGTCAGCG
GCCACAGGGGCAGGAGAAAGCAAAACAGCTAAGCTGGTTCGCAGACTTTC
GTGGAGTAGCCTTAAAGATGGTGCAAAGCTTAAAAAATCAGTCGAGTCTC
TGGTAGACTGGGAACTAGACGTTCTCGAGGCACCCCTGAAAGTTAAAACT
GATTTGATCGATGATCTGTCCATCCTTTGGCCCCTGAACCAGCAAATCAA
GGCGCCCGGAATAGTCGTGATTGGAGCTCAAGGAGCTGGTAAATCTTCTG
TTCTACAGCTCCTGACGGGTATGCCTTTTATCTATTGCACGGGCTCAGAT
AGCACAAAAAGGCCTATTAAGATGAACATTACTACCGACCCAACGACCGA
TGAGACATACACCCTGGTCAGTACTGTGGATCCAGAATGTTCCCCCGAGG
ATGGCAACACCAAGCATGTCAAAAAACTTGAAGAGCTATCCCGGCTCTTG
GCGCACCTGAACGAAAACCCAGAGCACAGCGAGGTGGAAGCTCGTAAGCA
GCCTATCTACGTCAAGGTTGTGCGACCCTCGGGTGCAGCGTATTCGGTCA
TGGACTTACCGGGCATCAATGAAGAGGACCCTGAGTCCGTGCGCTTCACC
GAGGACATCCTTCACCAGGACCCTTCGTGCGTGATTCTCGTGGTCTTGCC
CTTGACCGACATATTTGACCGGGCCTTTCCAGTGGCGTTGGCCAAGCGTG
TGGACCCGGAGGGGCGAAGGACCATCGGTGTGGTCACCAAGACAGATCTT
GTTCAGAAGGACATGGACGCCGTTGAAAAGGTACAAATGACGAGCCAGCC
GGGGGTCAATCTTCCCCTCGGATACATCGCCGTGCGCTCCGCTGCAGAGA
AAGAAAAAAATGAGTCGCGGCGACAAATCCTGCAGAGGGAACAAGCGTTT
TTTACCAGCAACCCCTTGCTTGCCGGTCTGCGACCCGAGCGATGGGGCTC
GACGACCCTTAAACGCTTGGTAGTGGACTGTCAAAGCAATGCCATCGGTC
AATCGATCCCGAAGGTGACGCGGCTCTTGCACAAGGAGCTCCAGGAGCTG
GACAACGAAGAGGAGAAGGCGGCAGAGGCCCTGGGGTGGAAAGACAGGGG
GCAGTCCCAGGGGCGGGCGAAGCCCCTGTCCGACCACCAAGACTTCTTCA
CCAAGCTCTGCCTGGATGCGAACACCTTGGGCTTCGAGATCGGCGAGCTG
GCTTTGTCCAGCAGCACGCGTCAGGAACGGCACCTGAACCTGGGCGCTCG
CCTGGCCGCTGCCATCACCTTCCACGAGAATGAAGCACGTCGGGCCCTGC
CGGCGAGTGTGGCCGAGAAAGTGGGCTCTTGGCTTGATGTGGAGGGCTTC
GCGAGCTCGGAGCCTCGCATTTACGTGAGCCGGGAGACCATGTCGCACGA
CGTGTTCCGCAAGTCGATTCGGGAGGTGTGCGGGCCTGTGCTAATGCACT
ATGCCACGGCCCTGTTGACGGAGACAGGCCAGCAGCTGGAGGAGGTGACG
CACGTGCTGGTGCAGGAGAAATTCACGGGCTTTCCCTGGCTGGTCCAGTC
CCTCAAGCACGAGGTCAATTTGTTGCTGGGCAAGAAGAAGGTCGACACGG
AGAAGGTCCTGCAGCGAATTGTGACCTCCGAGATGAATTGGTGCTTCTTG
AGCGAGGCGGATTTGAATGCCGTGGAGCGAGAAGTGGCCCTAAACATGGC
CGGGAAGTCCAGCGGCGGGCTGGGCATGGGGAAAGTGGCGCCTGCTGAGG
AGGCCAAAGGTAGCGGACTGCATTGGTCGGCGGAGATGTCGGACGTCTTG
AGCCCGAGCACGCGTGCGGAGGAGGGAGGGAAGCTCAGTCGCTTCGACCC
CACGCGGGAGGCGCGCATGCGGGAGCTGACCCTGGACGCTTACGTCCGCT
TGATGTTGCGGCGTGTTTTTTACGCCGTGCCCATGAACATTCGCAACGTG
ATGCTGAATGAATTCCGGCATGAGCTGGTGTCCATGGTGGCAGAGAAGTA
CAACGACGAGGCGAAGCTCAGAACTGTCATGTCTGAGGAACTTTGGCGAG
TGCAACAACGCCAGCAGCGGACTGAGCGTAAGGAATCCTTGACAGATTTG
CTGCACAAATTGGATTTATTATCTTAA

protein sequence of rna7322

>rna7322-protein ID=rna7322-protein|Name=rna7322|organism=Nannochloropsis gaditana|type=polypeptide|length=742bp
MLRMGSFSGGRRSSRRKSASSRPNSVDWCAPLASLEACLTEKTDLIDDMK
KVLPITVQAPGIVAIGMRGSGKSTILEALSGVPLSHASGLQRPVRVKIVS
DPTCTKEYVLVSGTDPLFKQNTRRLEHARDLPACLAALDKDVRTDEVGRT
QGMKAETNPVEDAGTPTSISQEEEEAENIREELSEQSSYFTGLGGVGSSG
PAEDLRLIYVRVVRPSGPTYTIMDFPAFSSPPRAEEEACLNRVLAKERDP
ASLVLAVMPVKDVFDRAEVLQIAKRLDPGSKQTIGVVTKMHLVTKGMGIV
EKLQMNGSKAVALPLGYVAVCAADPGNPAGTYQDVLDYEAKFFTTNPLLK
GLKPERWGLTSLKSLVIHCQTNSITQRIPGLSQAIRSEIEDLSRTCVQND
ERIEQKATTPRKKKSLGVFENTKDVFSKLCSEMTLVMFDINDLANGSSTR
QDRKLNLGPRFLIAVETREAEARRALPVCNSSEVADWLWGELQEFGGVAS
NSDSIMHPIFRKAVRELFFPVLRGYAKSIIDDLDEMLKYAAEKMLEERFG
AYSRLVESLTRDVTQVQETKKREADALIARLLEAELNWVLVDAVDMAHIE
KETAKDMENSKTGDRGERRSDMWGMEGVDEEQRESKLNKSKSGKVFMQSD
HRGELQAMQSCLHQYVHLLLRRMFYAVPMNTRNVMINEFRDDVLSVVTGK
YNEETKLRALMSEELWAGHSRQQQAVRRSALEEVMNKLDLLS

mRNA from alignment at CM002471.1:325837..328065-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7322 ID=rna7322|Name=rna7322|organism=Nannochloropsis gaditana|type=mRNA|length=2229bp|location=Sequence derived from alignment at CM002471.1:325837..328065- (Nannochloropsis gaditana)
ATGCTCCGAATGGGGAGTTTTAGCGGTGGTCGGCGGAGCAGTCGGCGCAA
ATCAGCGTCTTCGCGTCCGAATTCCGTAGATTGGTGCGCCCCTTTGGCCA
GCCTTGAAGCTTGTTTGACCGAGAAAACTGATTTAATCGATGATATGAAA
AAGGTACTGCCCATTACTGTCCAAGCTCCTGGCATTGTGGCAATTGGAAT
GCGCGGCTCTGGCAAATCGACCATACTTGAAGCATTGAGCGGCGTTCCCT
TATCCCACGCGAGCGGTCTGCAGCGTCCAGTGAGAGTGAAAATTGTGTCT
GACCCTACCTGCACAAAGGAGTATGTCCTAGTCAGCGGGACGGACCCTCT
TTTCAAGCAGAACACCAGGCGGCTGGAGCATGCCCGAGACCTGCCGGCGT
GCCTAGCTGCACTCGACAAAGACGTGCGCACTGATGAAGTAGGGAGAACG
CAGGGTATGAAAGCGGAGACCAATCCTGTCGAAGATGCGGGGACCCCCAC
CTCCATTTCTCAAGAGGAAGAAGAAGCGGAAAACATAAGGGAGGAGCTGT
CCGAGCAGTCGAGCTATTTTACAGGCCTCGGCGGTGTTGGTAGCTCAGGT
CCTGCTGAAGACCTGAGGTTGATATATGTGCGCGTTGTCCGTCCCTCTGG
CCCCACATATACCATCATGGACTTTCCTGCTTTTTCCTCTCCACCCCGTG
CCGAGGAAGAAGCCTGCCTGAACCGCGTCTTGGCAAAGGAGAGAGATCCA
GCCAGTCTCGTCCTCGCCGTCATGCCTGTTAAGGACGTATTCGACCGAGC
CGAGGTACTTCAGATTGCGAAACGCCTTGATCCAGGCTCCAAGCAAACAA
TTGGAGTCGTGACCAAGATGCATTTGGTGACTAAAGGCATGGGGATCGTG
GAAAAGCTCCAGATGAATGGAAGCAAGGCCGTGGCGCTGCCACTTGGGTA
CGTAGCTGTGTGTGCGGCCGATCCAGGAAACCCAGCAGGGACTTATCAAG
ACGTTCTCGATTATGAGGCCAAATTCTTTACAACCAACCCTCTGCTTAAG
GGGTTGAAGCCGGAGCGATGGGGCCTGACCTCCCTCAAGTCGCTTGTCAT
CCATTGCCAGACCAACAGCATTACGCAACGTATACCCGGACTCAGCCAAG
CCATTCGCTCGGAAATCGAGGATTTGAGCCGAACCTGTGTCCAAAACGAC
GAAAGGATAGAGCAGAAGGCGACCACGCCCCGGAAAAAGAAGTCTTTAGG
GGTGTTTGAGAATACCAAGGACGTGTTCAGCAAGCTATGCTCTGAGATGA
CACTGGTCATGTTCGACATTAACGACTTGGCTAACGGAAGCAGCACTCGC
CAAGATCGGAAACTCAATCTAGGCCCACGTTTCCTGATCGCAGTCGAAAC
GCGGGAAGCGGAGGCAAGGCGCGCCTTGCCCGTGTGCAACTCCTCCGAGG
TCGCCGATTGGCTGTGGGGAGAGCTGCAGGAATTTGGGGGCGTCGCTAGC
AACTCGGACTCCATAATGCATCCTATCTTCCGCAAGGCCGTTCGCGAATT
GTTCTTCCCTGTTTTGCGTGGGTATGCCAAAAGCATCATCGATGACCTGG
ACGAGATGCTTAAGTATGCGGCGGAAAAAATGCTGGAAGAGCGGTTCGGA
GCCTATAGTCGTCTCGTAGAGTCTCTTACTCGAGATGTCACACAGGTTCA
AGAGACAAAGAAAAGGGAGGCAGACGCTCTGATTGCTCGACTCCTGGAGG
CCGAATTAAATTGGGTGCTCGTGGATGCGGTAGATATGGCGCACATTGAA
AAAGAGACTGCCAAGGACATGGAAAATAGCAAGACAGGGGACCGTGGAGA
AAGGAGGAGCGATATGTGGGGCATGGAGGGCGTCGATGAGGAGCAGAGGG
AAAGTAAGTTGAACAAGAGCAAGAGTGGCAAGGTGTTTATGCAATCGGAT
CACCGAGGGGAGCTCCAGGCAATGCAGAGTTGCCTTCATCAGTATGTGCA
TCTATTGCTTAGGCGCATGTTCTACGCTGTTCCTATGAACACCAGAAATG
TGATGATTAATGAATTCCGTGACGATGTGCTCTCTGTGGTCACGGGGAAG
TACAATGAAGAAACGAAACTTCGGGCTCTGATGTCTGAGGAGCTGTGGGC
GGGTCACAGTCGACAGCAGCAGGCTGTTCGCAGATCTGCTTTGGAAGAGG
TCATGAATAAATTGGATTTACTGTCCTAG

Coding sequence (CDS) from alignment at CM002471.1:325837..328065-

>rna7322 ID=rna7322|Name=rna7322|organism=Nannochloropsis gaditana|type=CDS|length=2229bp|location=Sequence derived from alignment at CM002471.1:325837..328065- (Nannochloropsis gaditana)
ATGCTCCGAATGGGGAGTTTTAGCGGTGGTCGGCGGAGCAGTCGGCGCAA
ATCAGCGTCTTCGCGTCCGAATTCCGTAGATTGGTGCGCCCCTTTGGCCA
GCCTTGAAGCTTGTTTGACCGAGAAAACTGATTTAATCGATGATATGAAA
AAGGTACTGCCCATTACTGTCCAAGCTCCTGGCATTGTGGCAATTGGAAT
GCGCGGCTCTGGCAAATCGACCATACTTGAAGCATTGAGCGGCGTTCCCT
TATCCCACGCGAGCGGTCTGCAGCGTCCAGTGAGAGTGAAAATTGTGTCT
GACCCTACCTGCACAAAGGAGTATGTCCTAGTCAGCGGGACGGACCCTCT
TTTCAAGCAGAACACCAGGCGGCTGGAGCATGCCCGAGACCTGCCGGCGT
GCCTAGCTGCACTCGACAAAGACGTGCGCACTGATGAAGTAGGGAGAACG
CAGGGTATGAAAGCGGAGACCAATCCTGTCGAAGATGCGGGGACCCCCAC
CTCCATTTCTCAAGAGGAAGAAGAAGCGGAAAACATAAGGGAGGAGCTGT
CCGAGCAGTCGAGCTATTTTACAGGCCTCGGCGGTGTTGGTAGCTCAGGT
CCTGCTGAAGACCTGAGGTTGATATATGTGCGCGTTGTCCGTCCCTCTGG
CCCCACATATACCATCATGGACTTTCCTGCTTTTTCCTCTCCACCCCGTG
CCGAGGAAGAAGCCTGCCTGAACCGCGTCTTGGCAAAGGAGAGAGATCCA
GCCAGTCTCGTCCTCGCCGTCATGCCTGTTAAGGACGTATTCGACCGAGC
CGAGGTACTTCAGATTGCGAAACGCCTTGATCCAGGCTCCAAGCAAACAA
TTGGAGTCGTGACCAAGATGCATTTGGTGACTAAAGGCATGGGGATCGTG
GAAAAGCTCCAGATGAATGGAAGCAAGGCCGTGGCGCTGCCACTTGGGTA
CGTAGCTGTGTGTGCGGCCGATCCAGGAAACCCAGCAGGGACTTATCAAG
ACGTTCTCGATTATGAGGCCAAATTCTTTACAACCAACCCTCTGCTTAAG
GGGTTGAAGCCGGAGCGATGGGGCCTGACCTCCCTCAAGTCGCTTGTCAT
CCATTGCCAGACCAACAGCATTACGCAACGTATACCCGGACTCAGCCAAG
CCATTCGCTCGGAAATCGAGGATTTGAGCCGAACCTGTGTCCAAAACGAC
GAAAGGATAGAGCAGAAGGCGACCACGCCCCGGAAAAAGAAGTCTTTAGG
GGTGTTTGAGAATACCAAGGACGTGTTCAGCAAGCTATGCTCTGAGATGA
CACTGGTCATGTTCGACATTAACGACTTGGCTAACGGAAGCAGCACTCGC
CAAGATCGGAAACTCAATCTAGGCCCACGTTTCCTGATCGCAGTCGAAAC
GCGGGAAGCGGAGGCAAGGCGCGCCTTGCCCGTGTGCAACTCCTCCGAGG
TCGCCGATTGGCTGTGGGGAGAGCTGCAGGAATTTGGGGGCGTCGCTAGC
AACTCGGACTCCATAATGCATCCTATCTTCCGCAAGGCCGTTCGCGAATT
GTTCTTCCCTGTTTTGCGTGGGTATGCCAAAAGCATCATCGATGACCTGG
ACGAGATGCTTAAGTATGCGGCGGAAAAAATGCTGGAAGAGCGGTTCGGA
GCCTATAGTCGTCTCGTAGAGTCTCTTACTCGAGATGTCACACAGGTTCA
AGAGACAAAGAAAAGGGAGGCAGACGCTCTGATTGCTCGACTCCTGGAGG
CCGAATTAAATTGGGTGCTCGTGGATGCGGTAGATATGGCGCACATTGAA
AAAGAGACTGCCAAGGACATGGAAAATAGCAAGACAGGGGACCGTGGAGA
AAGGAGGAGCGATATGTGGGGCATGGAGGGCGTCGATGAGGAGCAGAGGG
AAAGTAAGTTGAACAAGAGCAAGAGTGGCAAGGTGTTTATGCAATCGGAT
CACCGAGGGGAGCTCCAGGCAATGCAGAGTTGCCTTCATCAGTATGTGCA
TCTATTGCTTAGGCGCATGTTCTACGCTGTTCCTATGAACACCAGAAATG
TGATGATTAATGAATTCCGTGACGATGTGCTCTCTGTGGTCACGGGGAAG
TACAATGAAGAAACGAAACTTCGGGCTCTGATGTCTGAGGAGCTGTGGGC
GGGTCACAGTCGACAGCAGCAGGCTGTTCGCAGATCTGCTTTGGAAGAGG
TCATGAATAAATTGGATTTACTGTCCTAG

Synonyms

Publications