rna7316, rna7316 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7316
Unique Name	rna7316
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1233
Alignment location	CM002471.1:309698..311910 -

Link to JBrowse

Properties


Property Name	Value
Product	serine long chain base subunit 1
Orig transcript id	gnl\|cribi\|Naga_100057g34.3926.mrna
Orig protein id	gnl\|cribi\|Naga_100057g34.3926
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:309698..311910 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100057g34	gene7081	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23367.1	cds7299	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7316	rna7316-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:309698..311910-
coding sequence from alignment at CM002471.1:309698..311910-

mRNA sequence

>rna7316 ID=rna7316|Name=rna7316|organism=Nannochloropsis gaditana|type=mRNA|length=1233bp
GCGTACCGATTGCAGCACCGGGGCGGAATTTGTGGCGAGTAACCCTAGTA
TGTAGACGCATAGAGGATCAAGGGCTCCTTGACCAGAGCAATGAGGGCCA
TCGACGGTCCACTGACAATATGATCGGGGAGGTGTGTCCATGTTGCACAT
AATAAGTCTTGGCCTCACGTACTCATTCTTTTTGTTGCGTCATAGGCCGC
GCAAAAGCCCGGGGTCGGCTTCTGGTCGCTCGTGTCCTGGTCGATCTCCT
CCTACCCCGCCAGAGGTGGCGCTTCCACCATGTCGGATGCGCAAATGCGG
ACCGCGTCCTCCACCACCTGCAGCTTACATGGACGACGGAAGCGGCCACG
ACCTTTCCCACGGGCCCTAACCGCTGCAACAGCGGCTGCTTACACCGTCC
TTTTCACTTTCTCCTGCCCTCCTCCGACCGTCCACGCCCGGCCATCCCCT
CCCCCGTCTGCTGCGTCCCCCAGCAATCCCAACGGCAATCCATGGTCGTA
TTACGATGGTCCTTCCTCTTACACTCCGGGCCGCCCCAACGATCAGCCCC
CACCGCCCTCGGCTTCCCGACCTCAACGCGCAGGAGGGGGATACCCCCCC
TACCTTGGGGACGAAGAGGAAGAGAATGAGAGGCGGGCCCCGGGCAAAGT
ACGGAACCGGCGCCCCCTTTCCGCGTCCACTGCTGGCGGTTCCTCCCTCC
CCATGCCGCGGGAGGGGGCAGCGTGGGGAGGGGTGGGACGCCGCCGGGAC
GGGAGGGAGAGGACAGAGGGGTTCCGGTACCAGGCTCAGTACCTGGTGGA
GGAGGAGGAGGAGACCTTTGTGGAGGGCATGGAGGGGCAGGGGGAGGGCC
AAGAGGGCCCAGAGGCAGGCCCGGCCGACCCCGTGGACCTGTACTGTGCC
CGGTGGCAGGGGCGCATGGCGGTGACCCTGGCGGCGGGCGTCGCGGGGGC
GGGCCTGGGGCTGGGATTGAGCGCCTCGGCCATCCACCGCCCGGCCTCCT
GCGCCCTCGCCGGCCTGGGTCTGGGCCTCTTCCTCTCCCTGCTCAGGAAC
GACTTCGGGGACCTGTTTCGCGCCCTCGGCTTGCTGCTCATCTATCTGGT
GGAGCGTCAAGTGAGCACGGGGACGGCCTACCCTGCCCTCCATCAGCTGC
GCCCTTTGCTTCGACTGGCACCCCGGCGGCCTTTCCCGCCCGTGGAAAAT
CCTTGGGCTTACGTACGGGCGTCGCCGAGGTAA

protein sequence of rna7316

>rna7316-protein ID=rna7316-protein|Name=rna7316|organism=Nannochloropsis gaditana|type=polypeptide|length=530bp
MAADPSLGDSFIDLTIALEQLWQQVRRELSRDGVKEWLLGAPARYKKWWL
HLVEHAPGHVVVETALILFIIWLIFLRKTVDPSKEDSFLSEKEIDQLVEE
WQPEPLVPGPDPAWDEEDAQALVVEEVDGTRVVVNGKKMINMASFDFLGL
AGRGEVKEAARAALNKYGCGSCGPRGFYGSIDVHVMAEQAMAAFLGAEEA
ISYSDAASSVSSTLPAFAKKGDLLIADEGVYEPIQTAINLSRAQVRYFRH
NDMEDLERVLREVAEEDRRLDRNEREQRRFIVVEGLYKNFGDLCPLPALI
ALKRQYRYRLYLDQTFSFGCFGTAGRGLAEHFGVPLADVEVMSVSISHAL
GSVGGMCVGTSEVVDHQRLSGAGYCYSASAPPFTSSAAMAALALLEKEPE
LVTKLRENAVWLARALGKIPGLEVRSQEISPVLHVGVAKAVSDGWTREEE
ERVLQAIARACVDAGYAVVTSKYTLLDVEAVSKGGLLPEPSLRLAVSAVH
TRAELEGAVEAIRRSAAGVLKKHAGGRKGG

mRNA from alignment at CM002471.1:309698..311910-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7316 ID=rna7316|Name=rna7316|organism=Nannochloropsis gaditana|type=mRNA|length=2213bp|location=Sequence derived from alignment at CM002471.1:309698..311910- (Nannochloropsis gaditana)
GAAGGAATACAGGGATAACCTGCGTTTCTACTTATAATGTACAGACTGCA
ATCAACCTGTGTCGGTAGAAAAAGGAGGATTGAGAATTTTTCACAATCTT
TTCGATAGGCCATAATAACAGCTCGGACCGGCGGCTTGTAGCTTCGCTGC
CTAGACGCTATGACCTATTGCAGCACCCAAAAGGACGTCTGTGCATATCA
TAGGGATGTCTAACCGTTCATAGATGGCATCCTTGGCGATATCCTTCCTT
ATTCATTGTAAGAGGATCGAGAGGAGACGGAAACAGAGGCCTGCGTCCAA
GCAGGAAAGACAGAAATCTGACGACTTGATCAGAGCATCATGTTGTTCGA
TACGCACCTCTTGTCACAGGTTTGCCTGTCTCGGGAATACAATTAAGCTT
AGCTTGCCTGGTACAGTTGAATTATACATTTCTATGGAGTATTTAAGTGA
ACGCATGTGTAGTCAGTGCTTTTCTGTCCTCACTCTCATACCCTCTGTGG
CCCTCGTTACCCTATACTTCCCAGCTTATTTTCCTGTTAACGAGGGAACC
ACCTCCGCGGCACCCAGCGTCCATCATGGCAGCCGATCCATCGTTAGGAG
ACTCCTTTATAGACCTGACAATCGCACTGGAGCAACTCTGGCAGCAAGTG
CGGCGTGAGCTTTCCAGGGATGGTGTAAAGGAATGGCTTTTAGGCGCTCC
GGCACGCTACAAAAAGTGGTGGCTGCACTTGGTAGAGCATGCTCCTGGCC
ACGTGGTGGTCGAGACAGCCTTGATTCTGTTCATTATATGGTTGATCTTC
TTGAGGAAGACCGTGGACCCGTCCAAGGAGGACAGTTTCTTGTCGGAGAA
GGAGATCGACCAGCTGGTGGAGGAGTGGCAGCCGGAGCCCTTGGTCCCGG
GCCCGGACCCGGCCTGGGATGAGGAGGACGCGCAGGCCTTGGTCGTAGAG
GAGGTAGACGGCACGCGGGTGGTCGTGAACGGGAAAAAAATGATAAACAT
GGCGTCCTTCGACTTCTTGGGTCTGGCCGGTCGAGGCGAAGTCAAGGAGG
CGGCCCGCGCCGCCCTAAACAAGTACGGGTGTGGCTCTTGTGGACCGAGA
GGCTTTTACGGCTCCATCGATGTGCATGTGATGGCCGAGCAAGCGATGGC
GGCTTTCTTGGGCGCGGAGGAGGCCATTTCCTATTCTGACGCCGCCTCCT
CGGTTTCCTCCACGCTTCCCGCCTTCGCCAAGAAGGGCGACCTGTTGATC
GCGGACGAGGGCGTGTATGAGCCCATCCAGACGGCCATCAACCTCTCGCG
CGCCCAGGTCCGGTATTTCCGCCACAACGACATGGAGGACTTGGAGCGCG
TCTTGCGGGAGGTGGCGGAGGAGGACCGGCGACTGGATCGGAACGAGCGA
GAACAGCGTCGGTTCATCGTCGTGGAGGGCCTGTACAAAAACTTCGGGGA
CCTGTGCCCCCTCCCCGCCCTCATTGCCCTCAAGCGCCAGTACCGGTACC
GCCTCTACCTAGACCAGACCTTCTCCTTCGGGTGCTTCGGGACGGCGGGC
CGCGGTCTGGCCGAGCACTTCGGCGTGCCCCTCGCCGACGTCGAGGTCAT
GTCCGTCTCGATCTCGCACGCCCTGGGCTCGGTGGGGGGCATGTGCGTGG
GCACCTCCGAGGTCGTGGATCATCAGCGGCTCTCGGGGGCAGGCTACTGC
TACTCCGCCTCTGCCCCGCCCTTCACCTCCTCCGCGGCCATGGCGGCCTT
GGCCCTCTTGGAAAAGGAGCCGGAGTTGGTGACGAAATTGCGCGAAAATG
CTGTTTGGCTGGCTCGGGCGCTGGGGAAAATTCCGGGGCTGGAAGTGAGG
AGCCAAGAAATTTCCCCCGTGCTGCACGTAGGCGTGGCCAAGGCGGTCTC
TGACGGATGGACGCGGGAGGAGGAGGAGCGGGTATTGCAAGCCATAGCGC
GGGCATGTGTGGACGCCGGGTACGCCGTGGTCACGAGCAAATACACATTG
TTGGACGTGGAGGCTGTGTCGAAAGGAGGGCTCTTGCCGGAGCCCTCGCT
GCGGCTGGCGGTGTCGGCGGTCCACACGCGGGCCGAGCTGGAGGGGGCGG
TGGAGGCGATCAGGAGAAGCGCCGCCGGGGTCCTGAAGAAGCATGCGGGT
GGGAGGAAGGGGGGGTAGGAGGTTGGGCTCGAGAGCCGGCGACGGAAAGA
AAAAGGCCGGGGG

Coding sequence (CDS) from alignment at CM002471.1:309698..311910-

>rna7316 ID=rna7316|Name=rna7316|organism=Nannochloropsis gaditana|type=CDS|length=1593bp|location=Sequence derived from alignment at CM002471.1:309698..311910- (Nannochloropsis gaditana)
ATGGCAGCCGATCCATCGTTAGGAGACTCCTTTATAGACCTGACAATCGC
ACTGGAGCAACTCTGGCAGCAAGTGCGGCGTGAGCTTTCCAGGGATGGTG
TAAAGGAATGGCTTTTAGGCGCTCCGGCACGCTACAAAAAGTGGTGGCTG
CACTTGGTAGAGCATGCTCCTGGCCACGTGGTGGTCGAGACAGCCTTGAT
TCTGTTCATTATATGGTTGATCTTCTTGAGGAAGACCGTGGACCCGTCCA
AGGAGGACAGTTTCTTGTCGGAGAAGGAGATCGACCAGCTGGTGGAGGAG
TGGCAGCCGGAGCCCTTGGTCCCGGGCCCGGACCCGGCCTGGGATGAGGA
GGACGCGCAGGCCTTGGTCGTAGAGGAGGTAGACGGCACGCGGGTGGTCG
TGAACGGGAAAAAAATGATAAACATGGCGTCCTTCGACTTCTTGGGTCTG
GCCGGTCGAGGCGAAGTCAAGGAGGCGGCCCGCGCCGCCCTAAACAAGTA
CGGGTGTGGCTCTTGTGGACCGAGAGGCTTTTACGGCTCCATCGATGTGC
ATGTGATGGCCGAGCAAGCGATGGCGGCTTTCTTGGGCGCGGAGGAGGCC
ATTTCCTATTCTGACGCCGCCTCCTCGGTTTCCTCCACGCTTCCCGCCTT
CGCCAAGAAGGGCGACCTGTTGATCGCGGACGAGGGCGTGTATGAGCCCA
TCCAGACGGCCATCAACCTCTCGCGCGCCCAGGTCCGGTATTTCCGCCAC
AACGACATGGAGGACTTGGAGCGCGTCTTGCGGGAGGTGGCGGAGGAGGA
CCGGCGACTGGATCGGAACGAGCGAGAACAGCGTCGGTTCATCGTCGTGG
AGGGCCTGTACAAAAACTTCGGGGACCTGTGCCCCCTCCCCGCCCTCATT
GCCCTCAAGCGCCAGTACCGGTACCGCCTCTACCTAGACCAGACCTTCTC
CTTCGGGTGCTTCGGGACGGCGGGCCGCGGTCTGGCCGAGCACTTCGGCG
TGCCCCTCGCCGACGTCGAGGTCATGTCCGTCTCGATCTCGCACGCCCTG
GGCTCGGTGGGGGGCATGTGCGTGGGCACCTCCGAGGTCGTGGATCATCA
GCGGCTCTCGGGGGCAGGCTACTGCTACTCCGCCTCTGCCCCGCCCTTCA
CCTCCTCCGCGGCCATGGCGGCCTTGGCCCTCTTGGAAAAGGAGCCGGAG
TTGGTGACGAAATTGCGCGAAAATGCTGTTTGGCTGGCTCGGGCGCTGGG
GAAAATTCCGGGGCTGGAAGTGAGGAGCCAAGAAATTTCCCCCGTGCTGC
ACGTAGGCGTGGCCAAGGCGGTCTCTGACGGATGGACGCGGGAGGAGGAG
GAGCGGGTATTGCAAGCCATAGCGCGGGCATGTGTGGACGCCGGGTACGC
CGTGGTCACGAGCAAATACACATTGTTGGACGTGGAGGCTGTGTCGAAAG
GAGGGCTCTTGCCGGAGCCCTCGCTGCGGCTGGCGGTGTCGGCGGTCCAC
ACGCGGGCCGAGCTGGAGGGGGCGGTGGAGGCGATCAGGAGAAGCGCCGC
CGGGGTCCTGAAGAAGCATGCGGGTGGGAGGAAGGGGGGGTAG

Synonyms

Publications