rna7313, rna7313 (mRNA) Nannochloropsis gaditana

Overview
Namerna7313
Unique Namerna7313
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2268
Alignment locationCM002471.1:305411..305758 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100472g3.10259.mrna
Orig protein idgnl|cribi|Naga_100472g3.10259
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:305411..305758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100472g3gene7078Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7313rna7313-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23377.1cds7296Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7313 ID=rna7313|Name=rna7313|organism=Nannochloropsis gaditana|type=mRNA|length=2268bp
ATGCCATGGTGGAGGGCAAGTACTGCTTTGCTTTTGCTCCCCATGGCCAG
TGTATTGGCATTTATCCCCTCTGCGCCTCCGCTCGAGTCGTCATGGCGCC
GCGCTAGCCTCCCCCTGAAACATTCCTGCCGTCGTTTCTCACTCCCTTCC
CTCTTCCCCCGTGCCCTCCCGACCTCTTCTTCGTCTCCATCTTCTTTCGC
TTCTTCCTCCTTCTTCTCTTCTTCCTTCACCTCTTCCTCCGACTCCCACG
TGACCCCAAACCCACCAATACCGTCATCACCTCCAGGGGGGGAGGGAAAC
TTTTTCTCCTTACGGCGGCTACGTGCAGCACTCGCAGCATTGCGAGAAAC
AGGATCCGCGGGTCTATTGGCTTACGGCATTGTCAACGCTTTATATTATA
CGGTGGCCATTACGATCATTTGGTTGTGTGTGGATGGGGACGTGGAGCCG
CTACTCTCGCCGAGCGCCCTGGGAGCCACGGCAGCAGCCGCAGGGACAGG
CAAAGCGGCCATGTCTGCCGCGACGAGTGCGCCGAGTCTCCGCCTTCTCA
GCACCCGATTTCTGAAAGTGGTGGCCATGGCGTGGGCCGGCTCGCAGGTG
ACCAAACCGCTTCGAGTGGGCGGGGCCATCCTCCTGGCGCCGGCCGTATC
GCGTCTGATGGGATACACAGAGCGGAAACTGCAGCTTCGAAGCAAAAGGC
AGACGCTGGCCGTGCTTCTGGCGGCATTGATGGTCTTCCCAACGCTGGTG
TTTGCCGGTTTGCTTATAAAGGCGGGGGCGTGGGAGGCCGCCGCTCCGAT
GGTGGGCGGATGGGGGGAGGGGCTGAAAGAGGCGTTGGGCAGAGGGAGTC
CTGCGGTGGGTTCAAGGGGGAACGGAGGCGGGCAAGGGCCAGGAGGAAGG
GTTTCTGCCTTTGCAAGCTGCCGGTTGGGCGGGGGGGAAGGCGGGAGGCT
GTGGAAAAGACTGCGGGTTGGGAGGGTAGGGTCGCGCCTCCCGATCAACA
AGTCGGCGTCCTCTGCGCCTCTCTTTGCCTCGTTGCTCCTCCCCGCTCCC
TCGACTTTGGCCTTTTTGCAGCCGCCTTGTCCCCTCCCCTCCTTCCCGCC
CTCCTTCCCGCCCTCCCTCTCCTCCGCCCCACTTGGAGCGGGCACAAGCA
TCCGGAGGGAAGGATCGTGTCCCCCTCCCGTCTCTCTCTCCTTCCCCTCC
TCCTCCTTCCCCTCCTCCTCCTCCTCCTTCCCCTCCCCTCGTCCCTCTCC
GTCCCTCCCCCCGTCCCCCGACTCTCCCCCACCCAAACGCGTCCGCCGGA
AACGGCTGCAACGGCTCGCCAAACGCCGTCGGGCCTCCGACCCCGCCCGG
ACAAAGCGCCGCCCCCGCCAGCAGTACCTTCCCCCCAACCCGAACGTGCA
CGGCTGGGACCAGCACCCGGACTATCTCCGTGGGAAATGGACCTTGCGCT
CCTTGAGCTTCCGGCCTCCGCCCTCTGACCCCACGGCCCATGCCGACAGC
CCCTCGGACGCCGGGGGTGCGGACACCGGCGAAGGCCCCTCCCTCCCTCC
CTCCCCCTCCGCCCTCGACGTGGGCCCCCCTCCCCCGCCCTCCCTCCCGC
CCTCCGTTCTGGCCGGGCTGGAGATGGGCTGCAAATCTCTGGTGCTGAAG
GGGAAATCGGTCCTTCTCCTTCGCGAGGGGATGGGGCAGTTATCACCCCT
GGGCTGGGAGTTCACGCCCGCCAACCGCCGCGTCGTCTTCGAAGTGGCCT
CCCCCTCCCTTTCCCCCCCAGGCTCCATGCCGGGGTCAAGCCCGGGGCCC
AGTGGGCCGGGTGAAGGGGAGGGGGAGGGACGGAGGCTGGTCTGGCGGTT
CAGTGGGGAGGTCCGTCGGAAGCCCAAGCACTGGTGCCGCGTGACCGGCA
CGGTCCGGGTTCGTCTCGCCCCTCTCCCTACCTCTTCCCCTTCCTCCCCG
ACCAGTCACGGGGAGGCAGGCCCTTCTGGGGAGCGGGACGGACAAGCGCC
GCCGCGCCGTCGCAGCATCCCTTCCACGAAGGCGAGCTGGCCCGTGGTGG
CGAGTTTCGAGCTGGAGAAGGCGATGGCGCCGTTCCAGAGCTTAAACACC
TGGGAGAAGCTCTTGGTATGGGCGCGATTGGAGGCGGACCCGAACAGCAA
GGCGGGGAGGAGAGCCAAAGCGTCGGTCGTGAGGGGGCCCGAGGGTGGGG
GGAAGGAAGTGGGGGAGGAAGGAGAGGCGGCAAAGGAAGGGCGGGAAACG
GGACCGTCGAGTTTATAG
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protein sequence of rna7313

>rna7313-protein ID=rna7313-protein|Name=rna7313|organism=Nannochloropsis gaditana|type=polypeptide|length=115bp
MKSRALRMAGGGGRRPGRHCKIPGGRTRQQDGADVLLSIAPFGPPTAVMG
RRRHRCVPCAQEALSAVERPRSNKWKTESSLWRGLQASVLFILTSSFGTH
VVPSLCSAFLPEFLP
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mRNA from alignment at CM002471.1:305411..305758+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7313 ID=rna7313|Name=rna7313|organism=Nannochloropsis gaditana|type=mRNA|length=348bp|location=Sequence derived from alignment at CM002471.1:305411..305758+ (Nannochloropsis gaditana)
ATGAAATCGAGAGCCTTGAGGATggctgggggtggagggaggcgtccaGG
CAGACACTGTaagatacccggaggtaggACCCGACAGCAAGACGGAGCCG
ACGTTCTCCTGTCCATAGCGCCTTTTGGACCACCCACGGCAGtcatggga
aggagaagacatcGGTGCGTTCCCTGCGCACAAGAAGCATTGTCGGCGGT
CGAAAGGCCGAGGAGTAACAAATGGAAGACCGAGTCCTCCTTATGGAGGG
GTCTCCAAGCTTCCGTCTTGTTCATTCTTACTTCTTCTTTCGGAACTCAT
GTTGTGCCGTCCCTATGCTCGGCTTTTCTCCCAGAATTCCTCCCTTGA
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Coding sequence (CDS) from alignment at CM002471.1:305411..305758+

>rna7313 ID=rna7313|Name=rna7313|organism=Nannochloropsis gaditana|type=CDS|length=348bp|location=Sequence derived from alignment at CM002471.1:305411..305758+ (Nannochloropsis gaditana)
ATGAAATCGAGAGCCTTGAGGATggctgggggtggagggaggcgtccaGG
CAGACACTGTaagatacccggaggtaggACCCGACAGCAAGACGGAGCCG
ACGTTCTCCTGTCCATAGCGCCTTTTGGACCACCCACGGCAGtcatggga
aggagaagacatcGGTGCGTTCCCTGCGCACAAGAAGCATTGTCGGCGGT
CGAAAGGCCGAGGAGTAACAAATGGAAGACCGAGTCCTCCTTATGGAGGG
GTCTCCAAGCTTCCGTCTTGTTCATTCTTACTTCTTCTTTCGGAACTCAT
GTTGTGCCGTCCCTATGCTCGGCTTTTCTCCCAGAATTCCTCCCTTGA
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Synonyms
Publications