rna7301, rna7301 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7301
Unique Name	rna7301
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1362
Alignment location	CM002471.1:285927..288231 +

Link to JBrowse

Properties


Property Name	Value
Product	aspartate-semialdehyde dehydrogenase
Orig transcript id	gnl\|cribi\|Naga_100189g5.10210.mrna
Orig protein id	gnl\|cribi\|Naga_100189g5.10210
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:285927..288231 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100189g5	gene7066	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7301	rna7301-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23389.1	cds7284	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:285927..288231+
coding sequence from alignment at CM002471.1:285927..288231+

mRNA sequence

>rna7301 ID=rna7301|Name=rna7301|organism=Nannochloropsis gaditana|type=mRNA|length=1362bp
GAAGGCATTTGATTCACAATTTCCTAAACTTTACCCCTCATTTCGTGGGT
GGCATCCCTCCAGCCAGATTCTACAGAAACTTTTTGTTTCCTTGCGGTGG
CGGACGTGCTGCGAAAGGTTGAGCTCAGGCCACCGGCCTCGGTCTGGGAA
GAAGGAAGGCCGGGCAAAGCACCATGTCGCTGTTTGGCAACCTTGTTGGT
GGGCCCCAGGCCCGAGTCAACATAAAGCTCACCGGGATCGACCAACGGAT
GAAGAAAGAGATGAGCAGTGGGAGAGGTACCACCCACCTTCTGCCCCTCT
ACCAAGCGCACGAAGGAGTGGGCGGCATCGTAGAGGTCATCCTGGCGCCT
GGAAAGAAGTTGGAGCACTTAGGGATTAAGATAGAGCTTGTTGGAGCGAT
CGAGATGCTGCAGGACCGTGGCTCTGTCCATGAGTTCACCAACTTGGTCA
AGGAGCTAGACACGGCCGGCGTGCTCTTCTCCGACAAACAGTACACGTTC
GATTTCGCCACAGTGGACAAGCCCTACGACTCTTACACCGGCCTCAACGT
CCGCCTCCGCTACTTTTTGAAGGTGACCGTCACCCGTCAGTATGCACCAA
ATCTAGTGGCAGAGCAGGAGCTGGTGGTGCAGTCCACCACCCAAGTGCCA
GAATCCCATTCCAGCATAAAGATGGAGGTGGGCATAGAGGATTGTTTGCA
CATTGAATTCGAGTACGACAAGCAAAAATACCACCTGAAGGACGTCATTC
TCGGGAAAATCTACTTCCTCCTGGTGCGCATCAAAATCAAGCATATGGAG
CTCGCCATCATCCGCCGTGAGAGCGCGGGCACGGGGGCAAATGTCATGAA
CGAGAGTGAGACGCTCTGCAAGTTCGAGGTGATGGACGGGGCGCCGGTGA
AGGGCGAATGCATCCCTCTCCGCCTGTTCCTGTCCTCCATTGCGTTGACA
CCCACCTACCGAAGCGTTAACAACCGTTTCTCCGTCCGTTACTATTTGAA
CCTGGTGCTGGTGGACGAGGAGGACCGGCGGTATTTCAAGCAACAGGAAG
TGATTTTCTATAACAAGGAGCTGGGGTGAGCTTCACCGCCTTGCAGCAGC
TATCTTCCTTCTCGCGCCTGCTTCTCGAAGAGGGAGGGGCTGGGTGGTTG
TAGAGAATGTGGTCGGCTCAGGTCGGAAGCGTCGGTGTCAGGTCACGGCA
CACTCGACACTGGCAGGGAAAATAGAGGCGGTGACTAGAGGGGATAAGGA
AAGGAGTGGAGTGGTTGTGAATACAGGGAGGAGAGGGTTTGGGACGGGGG
AAGACGATGAACGAAACGCGTAGCGACACGACAAAGAAAGTTTTGGAGAG
AAGGATTCGATG

protein sequence of rna7301

>rna7301-protein ID=rna7301-protein|Name=rna7301|organism=Nannochloropsis gaditana|type=polypeptide|length=393bp
MSSSSSHHATQKVGVVGATGAVGAEMIKVLKDRRFPVTLETLRLFASERS
AGKTLSTPYGEKKIELFSVEAARECDFVFLAVSGTFALQYAKKISEKGGP
YVIDNSSAFRYDDDIPLVVPEINAAAIGSSKLIANPNCTTAIAVMALWPL
HRRYGIKRLLVSTYQAASGAGQEGMEELRTGMEHYLIGRDCQHQVFAHPL
PFNVIPHIDKFQENGYTKEEMKVAWETRKIFDYPHMEVSCTAVRVPTLRA
HAEALTIETYQEIEPSQALLLLQEAPGVEVRDDGEKNLYPMPLTATGKYE
VEVGRVRQSLVFGRKGLDMFVCGDQLLRGAASNAVFIAEAVLSPDKYGVG
REGGWGSTFAFEHWRRAKRAGWILSLLVAVGLVAVELASRGRI

mRNA from alignment at CM002471.1:285927..288231+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7301 ID=rna7301|Name=rna7301|organism=Nannochloropsis gaditana|type=mRNA|length=2305bp|location=Sequence derived from alignment at CM002471.1:285927..288231+ (Nannochloropsis gaditana)
CACTTAGCCGACAGCTGAGCAAGTATGTCCAGTTCCTCCTCTCACCATGC
CACGCAAAAagtgggggtggtgggagcCACAGGGGCCGTCGGGGCAGAGA
TGATCAAGGTGCGTCTGAGAAATTGATATAATCCCGAAACCTCTTTCAAA
ATATCTGATGGAGGATGACAATATTGACTCTCTGGACAGAAACAATACCC
GTCATAGTAATTCCTCGCTTGTCGTGCCTTAtctgccttccttttccatg
gctCCCCCCTCTACTTCTGTCCTACACCATATTTCCATTGGTTCATCCTC
CTTTATCTTTCCGTATCCGAAGGTTTTAAAAGATCGACGATTCCCGGTCA
CTTTGGAAACGCTGCGTCTCTTTGCGTCCGAGCGGAGTGCCGGGAAGACG
CTGAGCACGCCATatggggagaaaaaaatcgAGCTCTTCTCCGTGGAAGC
AGCCCGTGAATGCGACTTTGTCTTTTTGGCTGTGTCCGGCACCTTCGCCC
TGCAATACGCCAAGAAGATCAGCGAGAAGGGTGGACCGTATGTAATCGAC
AACTCATCGGCCTTTCGGTAAGCaacggagggggaagaagggaccgTGAC
GGGGTGATAGAGGAGGCAGGTCGCGGGCTGGGGGCGGCGTAGAAGAATCG
AGGGACCaccagggggaaaaggaggggagagattCATTCTTAGCCTGATG
ACCATGACCATGGGTGGGCGGGTGATTgtgtggaggaaagaaagatggag
aaaggcgagggagaggacgggggggagagggggaggttggggcggagggc
gggataaGACAGAAATAGGGCTTGGATGAGGCCCCGGGGGAGCAATTAAA
CGGAAACACCGCGACAGATACCGACTtacatttcccccctccctccccca
tctccctaCCCTCCTAGCTACGACGACGACATCCCCCTGGTGGTCCCGGA
GATCaacgccgccgccatcgGGTCCTCCAAACTCATCGCCAACCCCAACT
GCACCACTGCGATCGCCGTCATGGCCCTCTGGCCGCTCCATCGTCGCTAT
GGGATCAAACGCCTGCTCGTATCCACCTACCAGGCGGCCTCGGGagcggg
gcaggaagggatggaggagctgcggacGGGGATGGAGCACTACCTGATCG
GCCGCGACTGCCAGCACCAGGTCTTCGCGCACCCCCTCCCATTCAACGTC
ATCCCCCACATCGACAAGTTTCAAGTACGTCCCGGagcttttttcttcct
ttcgtGCTCTTTTCTctgccctttctctcttgtcCCACCccaccttgtcc
tctcccctctcgtGCGGATTGTAgtgccttccctctttccctcgctcccc
ttttccatcccctcATCTCTAAcgacacctccctccctccctccctccct
ccctccctctctccctccctcccttccaggaGAACGGCTAcaccaaggag
gagatgaaggtcGCGTGGGAGACGCGGAAGATTTTCGACTACCCCCACAT
GGAGGTTTCATGCacaggttgggagggagggagggagggagggaaggaga
tcgGTGGGGGCGAAAAGGGgacagcgaggagggagggaaggacgaagggg
cCGTTGTGATTATCGTTTTGACcaagaggatggcgaggggTCACGCAACA
CACGATCCGCGGGCAGCAAGGgcatcaccctccctccctcccttcctccc
ctccctccctccctcccgcccgcctcttccccctcccttcttcccagcCG
TCCGCGTCCCGACTTTGCGCGCGCATGCCGAGGCCCTCACCATCGAGACT
TACCAGGAAATCGagccctcccaggccctcctcctcctacagGAAGCccc
gggcgtggaggtgcgGGACGACGGGGAGAAGAATCTGTACCCGATGCCGC
TCACGGCCACGGGGAAGtacgaggtggaggtgggacgGGTCCGGCAGTCC
CTGGTCTTTGGGCGGAAGGGCCTGGACATGTTCGTGTGCGGGGATCAGTT
GTTGCGGGGGGCGGCTAGCAACGCCGTTTTTATTGCCGAGGCGGTTCTCT
CGCCCGATAAGtatggggtggggagggagggagggtggggctCGACCTTT
GCCTTTGAAcactggaggagggcgaagcgGGCAGGGTGGATCCTGAGCTT
GCTCGTGGCGGTGGGGCTAGTGGCCGTGGAGTTGGCGAGCAGGGGGCGTA
TTTAgtgggcagagggagggagggagggagggagggagggagggagggag
ggagggagggaggggaggagaaagggtcTATATAGGGGCAGGTAGGATGC
ATGGA

Coding sequence (CDS) from alignment at CM002471.1:285927..288231+

>rna7301 ID=rna7301|Name=rna7301|organism=Nannochloropsis gaditana|type=CDS|length=5910bp|location=Sequence derived from alignment at CM002471.1:285927..288231+ (Nannochloropsis gaditana)
ATGTCCAGTTCCTCCTCTCACCATGCCACGCAAAAagtgggggtggtggg
agcCACAGGGGCCGTCGGGGCAGAGATGATCAAGGTTTTAAAAGATCGAC
GATTCCCGGTCACTTTGGAAACGCTGCGTCTCTTTGCGTCCGAGCGGAGT
GCCGGGAAGACGCTGAGCACGCCATatggggagaaaaaaatcgAGCTCTT
CTCCGTGGAAGCAGCCCGTGAATGCGACTTTGTCTTTTTGGCTGTGTCCG
GCACCTTCGCCCTGCAATACGCCAAGAAGATCAGCGAGAAGGGTGGACCG
TATGTAATCGACAACTCATCGGCCTTTCGCTACGACGACGACATCCCCCT
GGTGGTCCCGGAGATCaacgccgccgccatcgGGTCCTCCAAACTCATCG
CCAACCCCAACTGCACCACTGCGATCGCCGTCATGGCCCTCTGGCCGCTC
CATCGTCGCTATGGGATCAAACGCCTGCTCGTATCCACCTACCAGGCGGC
CTCGGGagcggggcaggaagggatggaggagctgcggacGGGGATGGAGC
ACTACCTGATCGGCCGCGACTGCCAGCACCAGGTCTTCGCGCACCCCCTC
CCATTCAACGTCATCCCCCACATCGACAAGTTTCAAgaGAACGGCTAcac
caaggaggagatgaaggtcGCGTGGGAGACGCGGAAGATTTTCGACTACC
CCCACATGGAGGTTTCATGCacagcCGTCCGCGTCCCGACTTTGCGCGCG
CATGCCGAGGCCCTCACCATCGAGACTTACCAGGAAATCGagccctccca
ggccctcctcctcctacagGAAGCcccgggcgtggaggtgcgGGACGACG
GGGAGAAGAATCTGTACCCGATGCCGCTCACGGCCACGGGGAAGtacgag
gtggaggtgggacgGGTCCGGCAGTCCCTGGTCTTTGGGCGGAAGGGCCT
GGACATGTTCGTGTGCGGGGATCAGTTGTTGCGGGGGGCGGCTAGCAACG
CCGTTTTTATTGCCGAGGCGGTTCTCTCGCCCGATAAGtatggggtgggg
agggagggagggtggggctCGACCTTTGCCTTTGAAcactggaggagggc
gaagcgGGCAGGGTGGATCCTGAGCTTGCTCGTGGCGGTGGGGCTAGTGG
CCGTGGAGTTGGCGAGCAGGGGGCGTATTTAgATGTCCAGTTCCTCCTCT
CACCATGCCACGCAAAAagtgggggtggtgggagcCACAGGGGCCGTCGG
GGCAGAGATGATCAAGGTTTTAAAAGATCGACGATTCCCGGTCACTTTGG
AAACGCTGCGTCTCTTTGCGTCCGAGCGGAGTGCCGGGAAGACGCTGAGC
ACGCCATatggggagaaaaaaatcgAGCTCTTCTCCGTGGAAGCAGCCCG
TGAATGCGACTTTGTCTTTTTGGCTGTGTCCGGCACCTTCGCCCTGCAAT
ACGCCAAGAAGATCAGCGAGAAGGGTGGACCGTATGTAATCGACAACTCA
TCGGCCTTTCGCTACGACGACGACATCCCCCTGGTGGTCCCGGAGATCaa
cgccgccgccatcgGGTCCTCCAAACTCATCGCCAACCCCAACTGCACCA
CTGCGATCGCCGTCATGGCCCTCTGGCCGCTCCATCGTCGCTATGGGATC
AAACGCCTGCTCGTATCCACCTACCAGGCGGCCTCGGGagcggggcagga
agggatggaggagctgcggacGGGGATGGAGCACTACCTGATCGGCCGCG
ACTGCCAGCACCAGGTCTTCGCGCACCCCCTCCCATTCAACGTCATCCCC
CACATCGACAAGTTTCAAgaGAACGGCTAcaccaaggaggagatgaaggt
cGCGTGGGAGACGCGGAAGATTTTCGACTACCCCCACATGGAGGTTTCAT
GCacagcCGTCCGCGTCCCGACTTTGCGCGCGCATGCCGAGGCCCTCACC
ATCGAGACTTACCAGGAAATCGagccctcccaggccctcctcctcctaca
gGAAGCcccgggcgtggaggtgcgGGACGACGGGGAGAAGAATCTGTACC
CGATGCCGCTCACGGCCACGGGGAAGtacgaggtggaggtgggacgGGTC
CGGCAGTCCCTGGTCTTTGGGCGGAAGGGCCTGGACATGTTCGTGTGCGG
GGATCAGTTGTTGCGGGGGGCGGCTAGCAACGCCGTTTTTATTGCCGAGG
CGGTTCTCTCGCCCGATAAGtatggggtggggagggagggagggtggggc
tCGACCTTTGCCTTTGAAcactggaggagggcgaagcgGGCAGGGTGGAT
CCTGAGCTTGCTCGTGGCGGTGGGGCTAGTGGCCGTGGAGTTGGCGAGCA
GGGGGCGTATTTAgATGTCCAGTTCCTCCTCTCACCATGCCACGCAAAAa
gtgggggtggtgggagcCACAGGGGCCGTCGGGGCAGAGATGATCAAGGT
TTTAAAAGATCGACGATTCCCGGTCACTTTGGAAACGCTGCGTCTCTTTG
CGTCCGAGCGGAGTGCCGGGAAGACGCTGAGCACGCCATatggggagaaa
aaaatcgAGCTCTTCTCCGTGGAAGCAGCCCGTGAATGCGACTTTGTCTT
TTTGGCTGTGTCCGGCACCTTCGCCCTGCAATACGCCAAGAAGATCAGCG
AGAAGGGTGGACCGTATGTAATCGACAACTCATCGGCCTTTCGCTACGAC
GACGACATCCCCCTGGTGGTCCCGGAGATCaacgccgccgccatcgGGTC
CTCCAAACTCATCGCCAACCCCAACTGCACCACTGCGATCGCCGTCATGG
CCCTCTGGCCGCTCCATCGTCGCTATGGGATCAAACGCCTGCTCGTATCC
ACCTACCAGGCGGCCTCGGGagcggggcaggaagggatggaggagctgcg
gacGGGGATGGAGCACTACCTGATCGGCCGCGACTGCCAGCACCAGGTCT
TCGCGCACCCCCTCCCATTCAACGTCATCCCCCACATCGACAAGTTTCAA
gaGAACGGCTAcaccaaggaggagatgaaggtcGCGTGGGAGACGCGGAA
GATTTTCGACTACCCCCACATGGAGGTTTCATGCacagcCGTCCGCGTCC
CGACTTTGCGCGCGCATGCCGAGGCCCTCACCATCGAGACTTACCAGGAA
ATCGagccctcccaggccctcctcctcctacagGAAGCcccgggcgtgga
ggtgcgGGACGACGGGGAGAAGAATCTGTACCCGATGCCGCTCACGGCCA
CGGGGAAGtacgaggtggaggtgggacgGGTCCGGCAGTCCCTGGTCTTT
GGGCGGAAGGGCCTGGACATGTTCGTGTGCGGGGATCAGTTGTTGCGGGG
GGCGGCTAGCAACGCCGTTTTTATTGCCGAGGCGGTTCTCTCGCCCGATA
AGtatggggtggggagggagggagggtggggctCGACCTTTGCCTTTGAA
cactggaggagggcgaagcgGGCAGGGTGGATCCTGAGCTTGCTCGTGGC
GGTGGGGCTAGTGGCCGTGGAGTTGGCGAGCAGGGGGCGTATTTAgATGT
CCAGTTCCTCCTCTCACCATGCCACGCAAAAagtgggggtggtgggagcC
ACAGGGGCCGTCGGGGCAGAGATGATCAAGGTTTTAAAAGATCGACGATT
CCCGGTCACTTTGGAAACGCTGCGTCTCTTTGCGTCCGAGCGGAGTGCCG
GGAAGACGCTGAGCACGCCATatggggagaaaaaaatcgAGCTCTTCTCC
GTGGAAGCAGCCCGTGAATGCGACTTTGTCTTTTTGGCTGTGTCCGGCAC
CTTCGCCCTGCAATACGCCAAGAAGATCAGCGAGAAGGGTGGACCGTATG
TAATCGACAACTCATCGGCCTTTCGCTACGACGACGACATCCCCCTGGTG
GTCCCGGAGATCaacgccgccgccatcgGGTCCTCCAAACTCATCGCCAA
CCCCAACTGCACCACTGCGATCGCCGTCATGGCCCTCTGGCCGCTCCATC
GTCGCTATGGGATCAAACGCCTGCTCGTATCCACCTACCAGGCGGCCTCG
GGagcggggcaggaagggatggaggagctgcggacGGGGATGGAGCACTA
CCTGATCGGCCGCGACTGCCAGCACCAGGTCTTCGCGCACCCCCTCCCAT
TCAACGTCATCCCCCACATCGACAAGTTTCAAgaGAACGGCTAcaccaag
gaggagatgaaggtcGCGTGGGAGACGCGGAAGATTTTCGACTACCCCCA
CATGGAGGTTTCATGCacagcCGTCCGCGTCCCGACTTTGCGCGCGCATG
CCGAGGCCCTCACCATCGAGACTTACCAGGAAATCGagccctcccaggcc
ctcctcctcctacagGAAGCcccgggcgtggaggtgcgGGACGACGGGGA
GAAGAATCTGTACCCGATGCCGCTCACGGCCACGGGGAAGtacgaggtgg
aggtgggacgGGTCCGGCAGTCCCTGGTCTTTGGGCGGAAGGGCCTGGAC
ATGTTCGTGTGCGGGGATCAGTTGTTGCGGGGGGCGGCTAGCAACGCCGT
TTTTATTGCCGAGGCGGTTCTCTCGCCCGATAAGtatggggtggggaggg
agggagggtggggctCGACCTTTGCCTTTGAAcactggaggagggcgaag
cgGGCAGGGTGGATCCTGAGCTTGCTCGTGGCGGTGGGGCTAGTGGCCGT
GGAGTTGGCGAGCAGGGGGCGTATTTAgATGTCCAGTTCCTCCTCTCACC
ATGCCACGCAAAAagtgggggtggtgggagcCACAGGGGCCGTCGGGGCA
GAGATGATCAAGGTTTTAAAAGATCGACGATTCCCGGTCACTTTGGAAAC
GCTGCGTCTCTTTGCGTCCGAGCGGAGTGCCGGGAAGACGCTGAGCACGC
CATatggggagaaaaaaatcgAGCTCTTCTCCGTGGAAGCAGCCCGTGAA
TGCGACTTTGTCTTTTTGGCTGTGTCCGGCACCTTCGCCCTGCAATACGC
CAAGAAGATCAGCGAGAAGGGTGGACCGTATGTAATCGACAACTCATCGG
CCTTTCGCTACGACGACGACATCCCCCTGGTGGTCCCGGAGATCaacgcc
gccgccatcgGGTCCTCCAAACTCATCGCCAACCCCAACTGCACCACTGC
GATCGCCGTCATGGCCCTCTGGCCGCTCCATCGTCGCTATGGGATCAAAC
GCCTGCTCGTATCCACCTACCAGGCGGCCTCGGGagcggggcaggaaggg
atggaggagctgcggacGGGGATGGAGCACTACCTGATCGGCCGCGACTG
CCAGCACCAGGTCTTCGCGCACCCCCTCCCATTCAACGTCATCCCCCACA
TCGACAAGTTTCAAgaGAACGGCTAcaccaaggaggagatgaaggtcGCG
TGGGAGACGCGGAAGATTTTCGACTACCCCCACATGGAGGTTTCATGCac
agcCGTCCGCGTCCCGACTTTGCGCGCGCATGCCGAGGCCCTCACCATCG
AGACTTACCAGGAAATCGagccctcccaggccctcctcctcctacagGAA
GCcccgggcgtggaggtgcgGGACGACGGGGAGAAGAATCTGTACCCGAT
GCCGCTCACGGCCACGGGGAAGtacgaggtggaggtgggacgGGTCCGGC
AGTCCCTGGTCTTTGGGCGGAAGGGCCTGGACATGTTCGTGTGCGGGGAT
CAGTTGTTGCGGGGGGCGGCTAGCAACGCCGTTTTTATTGCCGAGGCGGT
TCTCTCGCCCGATAAGtatggggtggggagggagggagggtggggctCGA
CCTTTGCCTTTGAAcactggaggagggcgaagcgGGCAGGGTGGATCCTG
AGCTTGCTCGTGGCGGTGGGGCTAGTGGCCGTGGAGTTGGCGAGCAGGGG
GCGTATTTAg

Synonyms

Publications