rna7295, rna7295 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7295
Unique Name	rna7295
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	699
Alignment location	CM002471.1:265400..268944 +

Link to JBrowse

Properties


Property Name	Value
Product	peptidase
Orig transcript id	gnl\|cribi\|Naga_100189g11.10211.mrna
Orig protein id	gnl\|cribi\|Naga_100189g11.10211
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:265400..268944 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100189g11	gene7060	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7295	rna7295-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23390.1	cds7278	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:265400..268944+
coding sequence from alignment at CM002471.1:265400..268944+

mRNA sequence

>rna7295 ID=rna7295|Name=rna7295|organism=Nannochloropsis gaditana|type=mRNA|length=699bp
GAAGGGGGAGGGGGGGGGTATGTCCCGGTCGTAGAGCGGATGGAAGAATG
GTCGATGGAGAACGGCCTTTGGCAGCATTTCGCTTGTTTTTGTCGGGAAC
GCGGTAGCAAGATGGACGCAGTTGTGTTTGATTTCAAACACGAAGTGGTG
CACAAAGCCCGAAAATGTCCGAGAGCGCCGGTGGCCCGCCCGGCGGGAAG
GGGAAGAGGGTCAAAGGGAGGGGGGTCTGGGAAAGGAGACGGACGAGGGG
AAGCCACTCGGCAGAACAGGGAACAGGACGTGTCAGAAGAAGAGAAGGAG
GGGGCAGACAAGAATGTGGCGGGCAGGGGGGCGGAAGCAAGGGAGGGTGG
GAGTGGCGAGGCTGATGGTTCAGTACTGGGAACAAAAGTTGTAGAACTTG
TCCATGGGCGTGATAGAGAAGAAGGAGAAGACCAGGAAGGCAGAGAGCAG
GGAGAGAATAATAACGATGAGTTTGCTAATCAGGCCTCAGATACTTTGAT
CGTAGAGGAGATATAGCGCTGGGCAAAGAAGACGAGCCACACCAGACTCT
TGTCAGTGGTGCCATCCGATGCAAATAATTTGAAATAAAGAATTGTGCCC
TCACCAGTCGTGTTCTGATAACTGAGGCAAAGAACTGATTTTGAATTCAT
GGTAAATCTCGATGATCTAACTTTGCGCACTTTGCTGCCCAAGGTCGCA

protein sequence of rna7295

>rna7295-protein ID=rna7295-protein|Name=rna7295|organism=Nannochloropsis gaditana|type=polypeptide|length=751bp
MSGTRLCLRVFILLAISHCTVSAPPPPLERSGALHSALQPDQASGHPPNN
TLVSHAHVSYSSSLPASPFYPDRISPSPGTDRCTTIIVGPKASADGSTMT
THTADCAECDFRLAKVPARDWPAGAQRPIYLFASAYPRRVQEGRSPTWEP
ANLDSSLPQAPAWKKKGFSQIIGHIPQVRHTFALIEGLYGIENEHQVAIG
ESTCSGRFWTKPRGVPNGGQALLEIGELSSIALERCRTARCAIQTMGDLA
TRYGYYGAQWDGQMDDIIAEAGEALTVGDPREAWVFHILPDDTGTAAIWA
AQRVPDEHLSLVANQFIIRGIPRNHSDDFMHSDNLWRVAEEHRLWSSGDG
DLDFLHVYGFLRVHSAYATRRVWRVFTLAAPSLAASLPATVDDYGDSYPF
SVRPDKLLTPQDLMRYQRDHYEGTAYDLTQGVAAGPYGDPNRYDPAANLG
ENVTLLQAGAGFYERSISLFRTSYSTVTQSRSHLPNLVAARVWICQYMPA
MSTYTPLYVASTSLPPSYTQGSLFQYTDTCNYWAAASVGNWATRFYRYIR
QDVEAAQQSLEAPLFHEAETSDSQAMAMLATGDMEGAREVLAEQAGKAAE
VALRTWNDLFRTLIARYRDGYKVKDMQSPVFEQEFLFYPYWWLQVSGFFD
HSLQMAEPESLPPSTPTVLPEQGGSAKARGRVKKSVTEKDGAAMAVRSSG
RAEGEAGERGAGFTASTVVTAVGFVAGLCTALGFWLGQQWSKRQTYAPLG
P

mRNA from alignment at CM002471.1:265400..268944+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7295 ID=rna7295|Name=rna7295|organism=Nannochloropsis gaditana|type=mRNA|length=3545bp|location=Sequence derived from alignment at CM002471.1:265400..268944+ (Nannochloropsis gaditana)
GCTggccccaaaaaatgcacCTTCGCGTTTTATCCTGAGCACATCGTTAT
GGGAGTTAAAATACAGATGAGAAATTTATGTCGAGGATCATCGTGTTTTG
CTTCCTGGCTAGCATTCCCCCATGCTTCTACAAACCTATTAGAACATCTG
ACACGTGTGCCTGGCTGGATGTAAGACAGTCTTTTTTATTACGGGAAAAC
CAGAAGTCTTGAAAGTTGTTGGCACCTTTGTGCGTGAACGTTggcttctc
cacctcttccccggTACCACAGTCACGTTCAATCATTCTGACTGGACTTG
TGTCTCGCTTGCTTCTCTCAGCACTCATTGTACAGGTTGTTCGCCTGGGG
TCCCAAGACTAGGTCTTTTTAATTCATCCGTCATTTTTTGTCGGCTTGTC
TGGGGCTCCTTCTTTGAATTTACCACAACGAAGTTAAGTCCGAGCTTGAC
TATCCAAAATCCAAAGGGAAAGTGGATACTGGCATAGGAATTTGTGATTC
CTTCCGTCACGGTCACCACTTTTTGTCCTCTTcggggcctccctcctcct
cgtcctctccttcccttcaagcTCTTCCCGCACCATCCACCACACTCCGC
AATATGTCTGGGACTCGCCTCTGTCTTCGTGTTTttatcctcctcgccat
ctcCCACTGCACAGTCTCagcccctccgccacccctCGAGAGATCAGGCG
CCCTCCACTCTGCTCTCCAGCCAGACCAAGCATCAGGGCACCCTCCCAAC
AATACCTTAGTCTCCCACGCCCATGTGTCctactcttcctccctccctgc
gtccCCGTTCTACCCTGACCGCatctcccccagccccgGGACCGACCGAT
GCACCACCATCATAGTAGGGCCCAAGGCCAGCGCGGACGGGTCGACGATG
ACCACGCATACCGCCGACTGCGCCGAATGCGATTTCCGCCTCGCCAAGGT
GCCTGCCCGGGACTGGCCCGCGGGCGCCCAGCGGCCCATATACTTGTTCG
CTTCGGCCTATCCACGGCGGGTCCAGGAGGGGCGGAGTCCGACCTGGGAG
CCCGCGAATTTGGACTCCAGCCTGCCTCAAGCCCCGGcatggaaaaaaaa
gggcTTCAGCCAAATCATCGGGCACATTCCTCAAGTCCGGCATACGTTCG
CCTTGATTGAAGGCCTGTACGGCATCGAGAACGAGCATCAGGTGGCGATA
GGGGAGAGCACATGCAGTGGCCGTTTCTGGACCAAGCCCCGCGGCGTCCC
GAACGGAGGACAGGCCTTATTGGAGATCGGGGAGCTGAGCTCCATTGCCC
TGGAACGGTGCAGGACCGCGCGCTGTGCCATCCAGACGATGGGGGACTTG
GCCACCCGGTACGGATACTATGGGGCTCAGTGGGACGGGCAGATGGACGA
CATCATCGCGGAGGCAGGCGAAGCCTTGACGGTGGGGGATCCCCGAGAGG
CCTGGGTCttccacatcctccccgACGACACGGGGACGGCCGCGATATGG
GCCGCCCAACGGGTGCCGGACGAGCACCTCTCCCTGGTGGCCAACCAGTT
CATCATCCGTGGCATTCCCCGAAATCACTCGGACGACTTCATGCACTCGG
ACAATCTCTGGCGCGTGGCGGAGGAACACCGGCTCTGGTCCTCCGGGGAC
GGCGACTTAGATTTCCTCCACGTGTACGGCTTTTTGCGCGTGCATTCCGC
CTACGCGACCCGGCGGGTGTGGCGAGTCTTCACGCtggctgccccctccc
tcgccgcgtccctccccgccaccgtcGACGATTACGGGGACAGCtacccc
ttctccgtccgGCCCGACAAGCTCCTGACACCCCAGGACCTGATGCGCTA
CCAACGCGATCACTACGAAGGCACTGCCTACGATTTGACGCAAGGGGTGG
CCGCAGGACCCTACGGGGACCCGAACCGGTACGATCCCGCCGCCAATCTG
GGCGAAAACGTGACGCTCTTGCAGGCTGGCGCCGGGTTCTACGAACGCTC
CATCTCGCTGTTCCGGACCTCGTACTCGACGGTCACCCAGTCCCGCAGCC
ATTTGCCCAACCTGGTGGCGGCGCGCGTATGGATCTGTCAGTACATGCCA
GCCATGAGCACTTACACCCCCCTGTACGTGGCGTcgacctccctgccccc
ctcgtACACCCAAGGATCTCTATTCCAATACACGGACACGTGCAATTACT
GGGCGGCCGCCTCGGTGGGCAATTGGGCTACTCGGTTTTACCGCTACATC
CGTCAAGACGTGGAGGCTGCGCAACAGAGCTTGGAAGCCCCGTTGTTCCA
CGAGGCGGAGACGAGCGACTCGCAAGCCATGGCCATGTTGGCCACtgggg
acatggagggagcgcgggaggtgctggcggagcaggcgggaaaagcggcG
GAGGTTGCCTTGAGAACTTGGAACGGTGTGTGAGGCtgggtaggggaggg
aggggaggcgggtgAAGGTGGCAAAAAGGGCCTGAAAAGGGCGCGGAGGT
GTAGTaagaacaaggaggggaacgtTAGGATCTTTGTGGATACACGTCCA
CATGTGCTCAAGCCGCCTCTCGAAGTCTCACGGCGCActcatcgccttcc
tcctcgtgttCCCCTTTTCATCGTACCGCAGACCTTTTCCGCACCCTCAT
TGCCCGTTACCGTGACGGTTACAAGGTCAAAGATATGCAGTCTCCGGTAT
TTGAACAGGAATTTCTCTTCTACCCGTACTGGTGGCTCCAAGTGTCGGGC
TTTTTCGATCACAGCCTGCAAATGGCAGAACCggaatccctccctccttc
cacgcctaCGGTGTTGCCGGAGCAAGGGGGATCGGCGAAAGCAAGAGGGC
GGGTAAAGAAGAGTGTGACGGAAAAGGATGGGGCGGCTATGGCTGTGAGA
TCATCGGGGAGGgccgaaggagaggcgggcgagaGAGGAGCAGGGTTTAC
CGCATCGACGGTCGTGACCGCTGTGGGTTTTGTGGCAGGTCTTTGTACGG
CGCTGGGTTTCTGGCTCGGACAACAGTGGAGCAAACGACAAACCTACGCG
CCATTAGGCCCGTAGTTCTCGAAGCTCTTCGACCCCAAGAATCGTGAGAA
AGCGGATGAGGGTGGTGTATTATTTATACATACGTACTTTTGACGACGAA
GAATGATAAATGTGGGAGAGGTGTGATCCGAAGCCGTGAGTGAAAAAATT
AAGCTAGCGACAGGAAGTAATATTGTCAAGTGAGGGGCTGAGTATATTGA
TTCTCAAGTCTGTGCACTTTGAATGCCCTTTTCAAGATAAGAAGTCGTCC
GTCAGCCCGTACTAGCTTTAAAGAGCAACGGGTATAGAAAAGTCGATTCA
AGTGAAGGGCATACTTCGTAAACCGTGGCACGTTTCGTAAACCGTGGCAC
GTAAGCTGTTCTTTATCCTTACCAATGAATATCTCTAGCTTCACGAAATT
GCTTCCCGGTCATGTCTTCGCGTCATTGCTGTCTTGTCTTCTGCTCGTCT
AGTCGTCGTCATTAGCATTAAATAATCCTTTTTCAATTTGTAGTT

Coding sequence (CDS) from alignment at CM002471.1:265400..268944+

>rna7295 ID=rna7295|Name=rna7295|organism=Nannochloropsis gaditana|type=CDS|length=4512bp|location=Sequence derived from alignment at CM002471.1:265400..268944+ (Nannochloropsis gaditana)
ATGTCTGGGACTCGCCTCTGTCTTCGTGTTTttatcctcctcgccatctc
CCACTGCACAGTCTCagcccctccgccacccctCGAGAGATCAGGCGCCC
TCCACTCTGCTCTCCAGCCAGACCAAGCATCAGGGCACCCTCCCAACAAT
ACCTTAGTCTCCCACGCCCATGTGTCctactcttcctccctccctgcgtc
cCCGTTCTACCCTGACCGCatctcccccagccccgGGACCGACCGATGCA
CCACCATCATAGTAGGGCCCAAGGCCAGCGCGGACGGGTCGACGATGACC
ACGCATACCGCCGACTGCGCCGAATGCGATTTCCGCCTCGCCAAGGTGCC
TGCCCGGGACTGGCCCGCGGGCGCCCAGCGGCCCATATACTTGTTCGCTT
CGGCCTATCCACGGCGGGTCCAGGAGGGGCGGAGTCCGACCTGGGAGCCC
GCGAATTTGGACTCCAGCCTGCCTCAAGCCCCGGcatggaaaaaaaaggg
cTTCAGCCAAATCATCGGGCACATTCCTCAAGTCCGGCATACGTTCGCCT
TGATTGAAGGCCTGTACGGCATCGAGAACGAGCATCAGGTGGCGATAGGG
GAGAGCACATGCAGTGGCCGTTTCTGGACCAAGCCCCGCGGCGTCCCGAA
CGGAGGACAGGCCTTATTGGAGATCGGGGAGCTGAGCTCCATTGCCCTGG
AACGGTGCAGGACCGCGCGCTGTGCCATCCAGACGATGGGGGACTTGGCC
ACCCGGTACGGATACTATGGGGCTCAGTGGGACGGGCAGATGGACGACAT
CATCGCGGAGGCAGGCGAAGCCTTGACGGTGGGGGATCCCCGAGAGGCCT
GGGTCttccacatcctccccgACGACACGGGGACGGCCGCGATATGGGCC
GCCCAACGGGTGCCGGACGAGCACCTCTCCCTGGTGGCCAACCAGTTCAT
CATCCGTGGCATTCCCCGAAATCACTCGGACGACTTCATGCACTCGGACA
ATCTCTGGCGCGTGGCGGAGGAACACCGGCTCTGGTCCTCCGGGGACGGC
GACTTAGATTTCCTCCACGTGTACGGCTTTTTGCGCGTGCATTCCGCCTA
CGCGACCCGGCGGGTGTGGCGAGTCTTCACGCtggctgccccctccctcg
ccgcgtccctccccgccaccgtcGACGATTACGGGGACAGCtaccccttc
tccgtccgGCCCGACAAGCTCCTGACACCCCAGGACCTGATGCGCTACCA
ACGCGATCACTACGAAGGCACTGCCTACGATTTGACGCAAGGGGTGGCCG
CAGGACCCTACGGGGACCCGAACCGGTACGATCCCGCCGCCAATCTGGGC
GAAAACGTGACGCTCTTGCAGGCTGGCGCCGGGTTCTACGAACGCTCCAT
CTCGCTGTTCCGGACCTCGTACTCGACGGTCACCCAGTCCCGCAGCCATT
TGCCCAACCTGGTGGCGGCGCGCGTATGGATCTGTCAGTACATGCCAGCC
ATGAGCACTTACACCCCCCTGTACGTGGCGTcgacctccctgcccccctc
gtACACCCAAGGATCTCTATTCCAATACACGGACACGTGCAATTACTGGG
CGGCCGCCTCGGTGGGCAATTGGGCTACTCGGTTTTACCGCTACATCCGT
CAAGACGTGGAGGCTGCGCAACAGAGCTTGGAAGCCCCGTTGTTCCACGA
GGCGGAGACGAGCGACTCGCAAGCCATGGCCATGTTGGCCACtggggaca
tggagggagcgcgggaggtgctggcggagcaggcgggaaaagcggcGGAG
GTTGCCTTGAGAACTTGGAACGACCTTTTCCGCACCCTCATTGCCCGTTA
CCGTGACGGTTACAAGGTCAAAGATATGCAGTCTCCGGTATTTGAACAGG
AATTTCTCTTCTACCCGTACTGGTGGCTCCAAGTGTCGGGCTTTTTCGAT
CACAGCCTGCAAATGGCAGAACCggaatccctccctccttccacgcctaC
GGTGTTGCCGGAGCAAGGGGGATCGGCGAAAGCAAGAGGGCGGGTAAAGA
AGAGTGTGACGGAAAAGGATGGGGCGGCTATGGCTGTGAGATCATCGGGG
AGGgccgaaggagaggcgggcgagaGAGGAGCAGGGTTTACCGCATCGAC
GGTCGTGACCGCTGTGGGTTTTGTGGCAGGTCTTTGTACGGCGCTGGGTT
TCTGGCTCGGACAACAGTGGAGCAAACGACAAACCTACGCGCCATTAGGC
CCGTAGATGTCTGGGACTCGCCTCTGTCTTCGTGTTTttatcctcctcgc
catctcCCACTGCACAGTCTCagcccctccgccacccctCGAGAGATCAG
GCGCCCTCCACTCTGCTCTCCAGCCAGACCAAGCATCAGGGCACCCTCCC
AACAATACCTTAGTCTCCCACGCCCATGTGTCctactcttcctccctccc
tgcgtccCCGTTCTACCCTGACCGCatctcccccagccccgGGACCGACC
GATGCACCACCATCATAGTAGGGCCCAAGGCCAGCGCGGACGGGTCGACG
ATGACCACGCATACCGCCGACTGCGCCGAATGCGATTTCCGCCTCGCCAA
GGTGCCTGCCCGGGACTGGCCCGCGGGCGCCCAGCGGCCCATATACTTGT
TCGCTTCGGCCTATCCACGGCGGGTCCAGGAGGGGCGGAGTCCGACCTGG
GAGCCCGCGAATTTGGACTCCAGCCTGCCTCAAGCCCCGGcatggaaaaa
aaagggcTTCAGCCAAATCATCGGGCACATTCCTCAAGTCCGGCATACGT
TCGCCTTGATTGAAGGCCTGTACGGCATCGAGAACGAGCATCAGGTGGCG
ATAGGGGAGAGCACATGCAGTGGCCGTTTCTGGACCAAGCCCCGCGGCGT
CCCGAACGGAGGACAGGCCTTATTGGAGATCGGGGAGCTGAGCTCCATTG
CCCTGGAACGGTGCAGGACCGCGCGCTGTGCCATCCAGACGATGGGGGAC
TTGGCCACCCGGTACGGATACTATGGGGCTCAGTGGGACGGGCAGATGGA
CGACATCATCGCGGAGGCAGGCGAAGCCTTGACGGTGGGGGATCCCCGAG
AGGCCTGGGTCttccacatcctccccgACGACACGGGGACGGCCGCGATA
TGGGCCGCCCAACGGGTGCCGGACGAGCACCTCTCCCTGGTGGCCAACCA
GTTCATCATCCGTGGCATTCCCCGAAATCACTCGGACGACTTCATGCACT
CGGACAATCTCTGGCGCGTGGCGGAGGAACACCGGCTCTGGTCCTCCGGG
GACGGCGACTTAGATTTCCTCCACGTGTACGGCTTTTTGCGCGTGCATTC
CGCCTACGCGACCCGGCGGGTGTGGCGAGTCTTCACGCtggctgccccct
ccctcgccgcgtccctccccgccaccgtcGACGATTACGGGGACAGCtac
cccttctccgtccgGCCCGACAAGCTCCTGACACCCCAGGACCTGATGCG
CTACCAACGCGATCACTACGAAGGCACTGCCTACGATTTGACGCAAGGGG
TGGCCGCAGGACCCTACGGGGACCCGAACCGGTACGATCCCGCCGCCAAT
CTGGGCGAAAACGTGACGCTCTTGCAGGCTGGCGCCGGGTTCTACGAACG
CTCCATCTCGCTGTTCCGGACCTCGTACTCGACGGTCACCCAGTCCCGCA
GCCATTTGCCCAACCTGGTGGCGGCGCGCGTATGGATCTGTCAGTACATG
CCAGCCATGAGCACTTACACCCCCCTGTACGTGGCGTcgacctccctgcc
cccctcgtACACCCAAGGATCTCTATTCCAATACACGGACACGTGCAATT
ACTGGGCGGCCGCCTCGGTGGGCAATTGGGCTACTCGGTTTTACCGCTAC
ATCCGTCAAGACGTGGAGGCTGCGCAACAGAGCTTGGAAGCCCCGTTGTT
CCACGAGGCGGAGACGAGCGACTCGCAAGCCATGGCCATGTTGGCCACtg
gggacatggagggagcgcgggaggtgctggcggagcaggcgggaaaagcg
gcGGAGGTTGCCTTGAGAACTTGGAACGACCTTTTCCGCACCCTCATTGC
CCGTTACCGTGACGGTTACAAGGTCAAAGATATGCAGTCTCCGGTATTTG
AACAGGAATTTCTCTTCTACCCGTACTGGTGGCTCCAAGTGTCGGGCTTT
TTCGATCACAGCCTGCAAATGGCAGAACCggaatccctccctccttccac
gcctaCGGTGTTGCCGGAGCAAGGGGGATCGGCGAAAGCAAGAGGGCGGG
TAAAGAAGAGTGTGACGGAAAAGGATGGGGCGGCTATGGCTGTGAGATCA
TCGGGGAGGgccgaaggagaggcgggcgagaGAGGAGCAGGGTTTACCGC
ATCGACGGTCGTGACCGCTGTGGGTTTTGTGGCAGGTCTTTGTACGGCGC
TGGGTTTCTGGCTCGGACAACAGTGGAGCAAACGACAAACCTACGCGCCA
TTAGGCCCGTAG

Synonyms

Publications