rna7292, rna7292 (mRNA) Nannochloropsis gaditana

Overview
Namerna7292
Unique Namerna7292
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1121
Alignment locationCM002471.1:256635..258909 -

Link to JBrowse

Properties
Property NameValue
Productglycerol-3-phosphate mitochondrial precursor
Orig transcript idgnl|cribi|Naga_100430g2.1388.mrna
Orig protein idgnl|cribi|Naga_100430g2.1388
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:256635..258909 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100430g2gene7057Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23398.1cds7275Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7292rna7292-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7292 ID=rna7292|Name=rna7292|organism=Nannochloropsis gaditana|type=mRNA|length=1121bp
TGACACGTGAACAAGTGGCTTGAAAAGAGGAAGGAAATGCCTGGGTTTCC
CTTCGAGAGCGGGAACTCGCTTGTGCGTCATCCTAGCTACCCATGGTCCC
TTTGTGGGGGAGGCTGTTTCGTCCTACCGAATGTGTGGCGCTCCATGCAT
CTTCTGCCTCCCAAACCACCAACATGAGCACGCGAAGGAAGGAGAAAAAA
GTGGCCGCAACGTTCTCTTCTCATATTTATTGTCTCATCACAAACATAGG
TACATAATACAACAATCATGATCGTCTACAAGGATGTCATTAGCGGTGAC
GAAGTGGTCTCGGACGCGCTAAAAATTGAGCCCGTGAAGGAGAACGGGGA
GGACGTCCCGGGTCTATTTGAAGTGGATTCGGCCATGGTTGCCGTTGGCG
GTGGAGACATCGACATCGGGTGTGGTAATGCTTTTGGGGGGGCAGGGGAA
GACGAGGGAGCAGACGACAATGTCCAAAAAGAGAACAACGTGTCGGGTTC
CAGCGGCTTCAATTACACGGCGATGCCCTTCTCGAGTAAGGGTGAATTCA
AAAGCTGGGTCAAAGACTACGTCCGCAACGTCCGTCAGGCTCTGAAAGCG
AACGGCGTAGCCGTGGAAGAGATCAAAAAATTCATGGAAGAAGCCCCGGG
GTTCGTCAAGTGGCTGGTGGACAAGTACGACGACCTCGAGTTCTTTATGT
CCAAGAGCATGAACCCGGATGCGGGCTTGATCTTCTCTTACTACAAGGAC
GGGGCGCACTGCCCCACTTTTGTGTACATCAAGAGTGGCTACAAGGTTGT
CAAGTTCTAAAGATCAGCAGGGAGGGGATTTGGCGGCAGGGATAGTGGTG
GGTGCGGTTGGGACGGGTGCAGCGAGAAGAGAGGAGGGGGTCGTGGGGCA
GGCTGGAAGCGATGAGAGACGGAAGAGTGAAAACTGAGGGACGGAGGCAA
AAGCACCGCACGGAAAGACTAGAGGGCGAGAACCTTATAGACGTTCAATC
GTGGCATGATTTGTTGATTTCGATTTTTTTAAAACTGTTTCCTCCTTCGG
CCCCTGCTTTCACGGGCGTGGGGTAAGGGAGGCGGCGAAACGTATCGCAA
ACCCTCTCCTGGGCCCGACCA
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protein sequence of rna7292

>rna7292-protein ID=rna7292-protein|Name=rna7292|organism=Nannochloropsis gaditana|type=polypeptide|length=654bp
MSLQPHLALLGMAGSLVVADRLRSGPGRKSRAKDSHRHLPPTSRSANCEA
SGGKRELSPVEQLEDMRTTPIKCRDGTLVYPYSLPTRDAQLNRLKKEKFD
VLVIGGGCVGSGVALDAQIRGLKTAMVEANDFSAGTSGRSTKLIHGGIRY
LETAFWKLDYGSFALVQEALEERAHMLNAAPYMNSPLPIMIPIYKWWEVP
YFWAGAKAYDLVASRQKSVPSSHYMDVDEALFQFPMLRGKGLKGAIIYYD
GQMNDTRMGLTIALTAAQEGAAIANRVEVVSLLKDPGTGQVNGARVQDRL
TGVEWDIAAKVVVNATGVFADKIRKFDDPKAVELIEPAAGVHVMFPAHFS
PAKMGLIVPKTTDGRVLFFLPWEGCTLAGTTDSHSDITMHPQPTAQEVNF
IMQETNRYLTTNVAAKDLIAAWSGLRPLVKDPEKIKEGTAALSRNHVIEV
SETGKLITITGGKWTTYRRMAEDTVDRILQEHAGLLANGDVSPQASTWNR
KLLGADRAGIVCAQKFNQIGITLRNDYELPEDVSAHLVKSYGTRALQVAE
WVRAGYLDTKPGKAKRLHSRYPFLEAEVIFAVDQEYALKPMDILARRTRL
AFLDTEAARAAVPRVVKLMGDLLGWSWRQRTMEKAEALAFLETMNVEKTA
LLKK
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mRNA from alignment at CM002471.1:256635..258909-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7292 ID=rna7292|Name=rna7292|organism=Nannochloropsis gaditana|type=mRNA|length=2275bp|location=Sequence derived from alignment at CM002471.1:256635..258909- (Nannochloropsis gaditana)
CAAAATAGGCAGCCTCTCGCCTACCTGACTGAGCCTAGGCTGTCCTCGCT
CGTAACTCGCAACATCGTGCAGAAAAAAGACAACTCAATTTCCTACCAAA
TTTACGTCTACACATTCTTACCTTCATATCTTCACAGGTTAATATCGCCG
TGCCACCCCTAGACTTCAAGCAATGAGTCTGCAACCGCATCTCGCTTTGC
TTGGAATGGCGGGCTCATTGGTCGTGGCCGACCGCCTGCGTTCGGGACCA
GGCAGGAAAAGCCGCGCGAAGGACTCTCATAGGCATTTACCACCTACATC
ACGCTCCGCAAATTGCGAAGCAAGTGGCGGCAAGCGAGAGCTGTCCCCTG
TTGAGCAGCTGGAGGACATGCGGACAACACCTATCAAATGCCGGGACGGA
ACCCTGGTCTATCCGTACTCGCTACCCACGCGGGATGCGCAATTGAACCG
CCTGAAAAAAGAAAAATTTGATGTCCTGGTCATCGGAGGTGGCTGCGTAG
GGTCTGGTGTCGCGTTGGACGCCCAAATACGGGGCCTGAAGACCGCCATG
GTCGAGGCCAACGATTTCTCCGCCGGTACGTCGGGGCGGTCCACCAAATT
GATTCACGGGGGCATACGGTACCTGGAGACAGCCTTTTGGAAACTGGACT
ATGGCTCTTTTGCTCTGGTTCAAGAAGCTCTGGAGGAGCGCGCCCACATG
CTGAACGCAGCTCCGTACATGAACTCGCCGTTACCGATCATGATTCCGAT
TTACAAGTGGTGGGAGGTGCCGTATTTCTGGGCAGGCGCCAAGGCCTACG
ACCTGGTGGCGAGCAGACAGAAATCCGTGCCTTCCTCTCACTACATGGAC
GTGGACGAGGCTTTGTTCCAATTTCCCATGCTGCGCGGGAAGGGGTTGAA
AGGCGCTATCATTTACTACGATGGGCAGATGAATGATACGCGGATGGGCC
TTACCATCGCCTTGACAGCGGCGCAAGAAGGCGCCGCGATTGCGAATCGA
GTGGAAGTGGTGTCCCTCCTCAAAGACCCGGGGACCGGGCAGGTGAATGG
GGCGCGGGTTCAGGACCGACTCACAGGGGTGGAATGGGACATCGCCGCCA
AAGTGGTGGTCAACGCCACGGGCGTCTTCGCCGACAAAATCCGGAAATTC
GACGACCCCAAGGCGGTGGAATTGATCGAACCAGCCGCCGGGGTGCACGT
CATGTTCCCTGCCCATTTTTCCCCGGCAAAAATGGGCCTGATTGTCCCGA
AAACCACCGACGGGCGGGTCCTTTTCTTCCTGCCCTGGGAGGGGTGCACG
TTGGCGGGAACCACGGACTCGCACTCGGACATCACCATGCACCCCCAGCC
CACGGCCCAGGAGGTGAACTTTATCATGCAGGAGACGAATCGGTACCTGA
CCACGAACGTGGCAGCCAAGGACCTGATCGCCGCCTGGTCGGGCTTGCGT
CCGCTGGTGAAAGACCCGGAGAAGATCAAGGAAGGCACAGCCGCCCTCTC
CCGGAACCACGTGATCGAGGTCTCCGAGACAGGGAAGTTGATCACCATCA
CGGGCGGCAAATGGACCACCTATCGACGCATGGCGGAAGACACCGTCGAC
CGGATTTTGCAGGAGCACGCAGGGCTGCTGGCCAACGGAGACGTGAGCCC
CCAGGCGAGTACGTGGAACCGGAAGCTGCTCGGAGCCGACCGCGCCGGCA
TCGTCTGTGCGCAGAAATTCAACCAGATCGGGATCACCCTCCGGAACGAC
TACGAACTCCCCGAGGACGTGTCGGCCCATTTGGTCAAGAGCTACGGGAC
GCGGGCTTTGCAGGTGGCCGAATGGGTCCGCGCTGGCTACCTAGACACGA
AACCAGGCAAGGCGAAACGCCTGCACTCGCGCTACCCCTTTTTGGAGGCG
GAGGTAATATTTGCCGTGGACCAGGAATACGCCCTCAAGCCCATGGATAT
CTTGGCGCGTCGGACCCGTCTGGCCTTTCTCGACACAGAGGCGGCCCGGG
CAGCCGTGCCCCGGGTGGTGAAGCTGATGGGCGACTTGTTGGGATGGTCC
TGGCGTCAGCGGACCATGGAGAAGGCGGAAGCATTGGCGTTTTTGGAGAC
CATGAATGTAGAAAAGACGGCCCTGTTGAAGAAGTAGGGGTGGGATGGTT
GGATGAAGGAGGAAAACTTGGGGAGGTGAGAGGTGAGGGAGGAAGGGCGG
CAAGGAAGAGTATATACTTACAGTGGAAAGCGTGCAGGTGTACAGATTGA
AGGAAACAATGGAGATATCTTTGGC
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Coding sequence (CDS) from alignment at CM002471.1:256635..258909-

>rna7292 ID=rna7292|Name=rna7292|organism=Nannochloropsis gaditana|type=CDS|length=1965bp|location=Sequence derived from alignment at CM002471.1:256635..258909- (Nannochloropsis gaditana)
ATGAGTCTGCAACCGCATCTCGCTTTGCTTGGAATGGCGGGCTCATTGGT
CGTGGCCGACCGCCTGCGTTCGGGACCAGGCAGGAAAAGCCGCGCGAAGG
ACTCTCATAGGCATTTACCACCTACATCACGCTCCGCAAATTGCGAAGCA
AGTGGCGGCAAGCGAGAGCTGTCCCCTGTTGAGCAGCTGGAGGACATGCG
GACAACACCTATCAAATGCCGGGACGGAACCCTGGTCTATCCGTACTCGC
TACCCACGCGGGATGCGCAATTGAACCGCCTGAAAAAAGAAAAATTTGAT
GTCCTGGTCATCGGAGGTGGCTGCGTAGGGTCTGGTGTCGCGTTGGACGC
CCAAATACGGGGCCTGAAGACCGCCATGGTCGAGGCCAACGATTTCTCCG
CCGGTACGTCGGGGCGGTCCACCAAATTGATTCACGGGGGCATACGGTAC
CTGGAGACAGCCTTTTGGAAACTGGACTATGGCTCTTTTGCTCTGGTTCA
AGAAGCTCTGGAGGAGCGCGCCCACATGCTGAACGCAGCTCCGTACATGA
ACTCGCCGTTACCGATCATGATTCCGATTTACAAGTGGTGGGAGGTGCCG
TATTTCTGGGCAGGCGCCAAGGCCTACGACCTGGTGGCGAGCAGACAGAA
ATCCGTGCCTTCCTCTCACTACATGGACGTGGACGAGGCTTTGTTCCAAT
TTCCCATGCTGCGCGGGAAGGGGTTGAAAGGCGCTATCATTTACTACGAT
GGGCAGATGAATGATACGCGGATGGGCCTTACCATCGCCTTGACAGCGGC
GCAAGAAGGCGCCGCGATTGCGAATCGAGTGGAAGTGGTGTCCCTCCTCA
AAGACCCGGGGACCGGGCAGGTGAATGGGGCGCGGGTTCAGGACCGACTC
ACAGGGGTGGAATGGGACATCGCCGCCAAAGTGGTGGTCAACGCCACGGG
CGTCTTCGCCGACAAAATCCGGAAATTCGACGACCCCAAGGCGGTGGAAT
TGATCGAACCAGCCGCCGGGGTGCACGTCATGTTCCCTGCCCATTTTTCC
CCGGCAAAAATGGGCCTGATTGTCCCGAAAACCACCGACGGGCGGGTCCT
TTTCTTCCTGCCCTGGGAGGGGTGCACGTTGGCGGGAACCACGGACTCGC
ACTCGGACATCACCATGCACCCCCAGCCCACGGCCCAGGAGGTGAACTTT
ATCATGCAGGAGACGAATCGGTACCTGACCACGAACGTGGCAGCCAAGGA
CCTGATCGCCGCCTGGTCGGGCTTGCGTCCGCTGGTGAAAGACCCGGAGA
AGATCAAGGAAGGCACAGCCGCCCTCTCCCGGAACCACGTGATCGAGGTC
TCCGAGACAGGGAAGTTGATCACCATCACGGGCGGCAAATGGACCACCTA
TCGACGCATGGCGGAAGACACCGTCGACCGGATTTTGCAGGAGCACGCAG
GGCTGCTGGCCAACGGAGACGTGAGCCCCCAGGCGAGTACGTGGAACCGG
AAGCTGCTCGGAGCCGACCGCGCCGGCATCGTCTGTGCGCAGAAATTCAA
CCAGATCGGGATCACCCTCCGGAACGACTACGAACTCCCCGAGGACGTGT
CGGCCCATTTGGTCAAGAGCTACGGGACGCGGGCTTTGCAGGTGGCCGAA
TGGGTCCGCGCTGGCTACCTAGACACGAAACCAGGCAAGGCGAAACGCCT
GCACTCGCGCTACCCCTTTTTGGAGGCGGAGGTAATATTTGCCGTGGACC
AGGAATACGCCCTCAAGCCCATGGATATCTTGGCGCGTCGGACCCGTCTG
GCCTTTCTCGACACAGAGGCGGCCCGGGCAGCCGTGCCCCGGGTGGTGAA
GCTGATGGGCGACTTGTTGGGATGGTCCTGGCGTCAGCGGACCATGGAGA
AGGCGGAAGCATTGGCGTTTTTGGAGACCATGAATGTAGAAAAGACGGCC
CTGTTGAAGAAGTAG
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Synonyms
Publications