rna7289, rna7289 (mRNA) Nannochloropsis gaditana

Overview
Namerna7289
Unique Namerna7289
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2249
Alignment locationCM002471.1:249414..250639 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100077g19.5191.mrna
Orig protein idgnl|cribi|Naga_100077g19.5191
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:249414..250639 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100077g19gene7054Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7289rna7289-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23401.1cds7272Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7289 ID=rna7289|Name=rna7289|organism=Nannochloropsis gaditana|type=mRNA|length=2249bp
GAGAGAGGGAGATAATGTTGACCGTCCCCACGACATCCCGCACGCCTTCG
CCTGCCACGTGAAGAGTTTGTCGTCGTACCAGTTTGGCAGACGTCTAATC
ACTTAGTGCGCTCGTTGACGCCGACGGGGGCTTTGCACGGCATTGACTTG
GGAGTGAGGAGGAGGTTAGTGATATAAACGCCCGGTTGTCATCGAGCGTT
GAGAGGTCGCCATTCATATCATGTACGCCTTCCATGCTCACAACATACTG
GCTGCATACTGCAGGGCATGCTCACTCTAGGATAGAGAGAAGCGATTCTT
TTGTGGTGCCAGTGCGGTGAAGACGAGGGAAACAAGGGCCTGCATGACGG
ACAACCTCTCCATCGTGCATAGCCCTTTTCCTTGCTGTCTCTCGTCGAAT
TATAGGGACTGTTTCGCTGGAGAGGGTGCACTTATTTGTCTGCACGCTAT
ACAGAGACGCTGTTACCTGAAGAGGCGCTCGTGTCGGAGTTAATCTGCAC
TTTTCTCGCGGTACAATATTTGTGGTTGGAGGCCCTTAGTTTTCATGCAG
GCTTTCGACCAATACCGTTCGAGACACCAATCTGAGATGCTATGGCATGT
TCTTGGGTTTATGTTGATGATATCACATGGCAACGCCGTTCATTGTCCGT
GTGAGGAATGCGTCGGTAATGCTTACCATTTTTGCAGCGGCAGTCATGCA
GACGCGAACATGGGAGACCCTGTTATCTGCTCTTTGTCCCCATGGACGCG
GTGGCATACCTTGCTTGTCGCGTTTGTACAGGAATGTGTATGTGTTGCTC
CCCTCCAGCATTGTGCAAGGCATGCACAGATGGTCCTATCAATGGGATCT
GGCCTGGCCGAGTGCCATTGTCAGACGTGCTCCTCAAAGAATATGTTCAT
CTCCTCACAGGCGCGAGGACAGCGTACGTGCCGAAACACCCCGGATTTGT
CGCACCGCCTCCTTTCATCGAGAGCAGAAGCTTCCTTGGCCTTTTCCGAC
CTCCTGTGCCCGATCTTCTTTGCCTCTTCTTTCCCTTCCTTCCCCCCTCG
GCAGAGGGAAATCTGGACTTTCCACGCGAGGACAAGATTACGTGAAAATG
GGGGACATTCCACCGAACCAGACGTTATACGTGCAAAACCTGAACGAAAA
GTTGAACAAAGTTTCCCTGAAAAAACTCTTGTACCTCGCCTTCTCCGCCT
ACGGGCGTGTCATCGACATTGTCGCCTGCCGTGGCGAGTCCCTCCGGGGA
CAGGCGTGGGTCGTGTTTGACTCCGTGGGCAGTGCCACGACTGCGTTGAG
GAGCTTGCAAGGTTTCCCCTTTCTGGGCAAACCGATGCGCATCCAGTTTG
CGAAGGGCAAGAGCAACGCGGTGGCCCTCAGGGAAGGCACCTACGAGCCA
GGGAGCAAACGGCGCAAGCGAGGGGAGAAAGACGGAAAGAAGAAGGAGGA
AAGCCAAAAGCTCAGCGGATCAAGAGATGAGGGGAAGCGAGGAAAAGAAG
CAGAGGCGGAGGAGCACGTCGCGGGAATGGCACTGGCGGCAGGGGAAGTG
AGCAGCATGCTGATGGCCCAGGAGCTACCTACAGAGTGCACGGAGGAGAT
GTTGGCTGTCCTGTTCAGACGTTTCGCCGGCTTCCACGAGATTCGATTGG
CGGGTCAACGCGGCATTGCTTTCATTGAATTTCGGGACGAAGTATCTGCA
CGTACCGCCTTTCAAGCGTACAACGGATTCAAACTCTCTCAAACCGACGC
GCTCAAATTGACTTACGCGAAGAGGTGATACGGCAACATGAGGGGACGTG
AGCGGTTAATAGAGGGGTGTGGATGAAGTGAGGAACAATACATGTCATAG
TCATAATAAATCGGCATGCCTCAACGCAACAAGCGACAGATGAAGCCATG
TCTTAGCTATGAAGGATATCAGCGTGTCCGTGGCCCATTTCTTTACTAGC
AGTTGCCTTCCTGATCGTGTATGGAGCAAGCATGGCTTCCGGCTTGTTGC
TTTTAAGATCTAGCGTGAAAGATATGTTAACTTTCGAAAATTGAGTCTTA
GGATGGAGACTACACTTTATGCACGCAAAGAAAGCCTCGCCATGTTTTTA
ATAAAGTTTATACTGATCCCCCTACGCAGCAAAACGTTGCATAACGTGGA
CTTTATTTTACCCTTATCGAAAAGGTTTCGGGTGATGTCGGCATAGATTT
ATTTATCGAATTTCTTACCATGCTTATGACAGCAAAGAGGTGGTCGATG
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protein sequence of rna7289

>rna7289-protein ID=rna7289-protein|Name=rna7289|organism=Nannochloropsis gaditana|type=polypeptide|length=342bp
MASSPPALVPEGVPLQFMDADDEADLLCGLDEDVFGAGEVGGMDQFLAQG
VLTDLEMDSMWSKVVGGENLHQQALSPAQPPHAPSCSPPSLPPDPMLAIS
RQPSTCTSVQSSGSCSTSGGTRPRGRGRQGGGGERGRKKKGLGATGLRRG
EKAVKGEDAGSIWNGVGSAGSGETKAFSVSDGSLSASLPPSVPPSVPASV
PPSTALPPSLAPFVSESFFPPFASDPALWRSSSTLSETDRSSSTCTAGTE
VPPWPPGGSGGASPRRKGGRKRGREGTKPAGPKGAKKASAGRGRGGKEES
SRVGAGEGPEVGGQGGGEGLGHSFPLTGGAQVFSPAGEEREG
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mRNA from alignment at CM002471.1:249414..250639+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7289 ID=rna7289|Name=rna7289|organism=Nannochloropsis gaditana|type=mRNA|length=1226bp|location=Sequence derived from alignment at CM002471.1:249414..250639+ (Nannochloropsis gaditana)
AGAGATGGGCACGTAACATCGTGTAGACATTGAAATGAGGCATATTGAAT
CTAATAAAATCAATCgatggctttccttcctcgcgttGAATTTCATCCCC
ACAGGTTAGGCTGTTATCTTTTTAGAATTTTGGGCTATGACTACTAGGTA
TAAGAGTAAGGCGTAGACTAGACAGTGCGCCCGGGGCTTCCTCTACAGCC
ATGGCATCCTCACCACCGGCCCTCGTGCCTGAAGGCGTGCCCCTCCAATT
CATGGATGCGGACGATGAAGCCGACCTTCTGTGTGGtttggacgaggacg
tgtTTGGAGCCGGAGAGGTGGGCGGCATGGACCAATTTCTGGCGCAGGGC
GTTCTGACGGACTTGGAAATGGACAGCATGTGGAGTAAGGTGGTAGGGGG
AGAGAACTTGCACCAACAGGCCCTGTCCCCCGCCCAGCCTCCCCACGCGC
CAAGCtgcagccctccctccctcccgcccgaccCCATGCTTGCCATAAGC
CGGCAGCCTAGCACCTGCACCAGTGTCCAaagcagcggcagctgcaGCAC
AAGCGGTGGGACCCGACcgcggggcaggggcaggcagggcggagggggcg
agcggggaaggaagaagaagggcctgGGGGCGACCGGGCTGCGACGcgga
gagaaggcggtgaaaggggaggatgccGGGAGTATCTGGAATGGGGTCGG
AAGCGCGGGGTCAGGCGAGACCAAGGCTTTCAGCGTCTCGGACGGGAGCC
TGTCGGcctccttgccgccctccgtcccgccctccgtcccggcctccgtc
ccgccctccacggccctccctccctccctggctcCCTTTGTGTCCGagtc
cttctttcccccgttTGCGTCGGATCCGGCCTTGTGGAGGAGCTCCTCGA
CCCTGAGCGAGACGGACCGGAGTAGCAGCACCTGCACGGCGGGGACAGAG
GtcccgccgtggccgccagGGGGGTCAGGGGGGGCGTCCccgaggcggaa
gggggggaggaagcgagggagggaggggacgaagccGGCGGGTCCGAAAG
GAGCGAAAAAGGcgagcgcggggagggggagaggaggaaaggaggaaagc
tcTCGAGtaggcgcgggggaggggcccgaagtgggcgggcagggaggagg
ggagggactgggACACTCCTTCCCACtgacggggggggcgcaggTTTTTT
Ccccggcgggggaggagagggaagga
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Coding sequence (CDS) from alignment at CM002471.1:249414..250639+

>rna7289 ID=rna7289|Name=rna7289|organism=Nannochloropsis gaditana|type=CDS|length=1026bp|location=Sequence derived from alignment at CM002471.1:249414..250639+ (Nannochloropsis gaditana)
ATGGCATCCTCACCACCGGCCCTCGTGCCTGAAGGCGTGCCCCTCCAATT
CATGGATGCGGACGATGAAGCCGACCTTCTGTGTGGtttggacgaggacg
tgtTTGGAGCCGGAGAGGTGGGCGGCATGGACCAATTTCTGGCGCAGGGC
GTTCTGACGGACTTGGAAATGGACAGCATGTGGAGTAAGGTGGTAGGGGG
AGAGAACTTGCACCAACAGGCCCTGTCCCCCGCCCAGCCTCCCCACGCGC
CAAGCtgcagccctccctccctcccgcccgaccCCATGCTTGCCATAAGC
CGGCAGCCTAGCACCTGCACCAGTGTCCAaagcagcggcagctgcaGCAC
AAGCGGTGGGACCCGACcgcggggcaggggcaggcagggcggagggggcg
agcggggaaggaagaagaagggcctgGGGGCGACCGGGCTGCGACGcgga
gagaaggcggtgaaaggggaggatgccGGGAGTATCTGGAATGGGGTCGG
AAGCGCGGGGTCAGGCGAGACCAAGGCTTTCAGCGTCTCGGACGGGAGCC
TGTCGGcctccttgccgccctccgtcccgccctccgtcccggcctccgtc
ccgccctccacggccctccctccctccctggctcCCTTTGTGTCCGagtc
cttctttcccccgttTGCGTCGGATCCGGCCTTGTGGAGGAGCTCCTCGA
CCCTGAGCGAGACGGACCGGAGTAGCAGCACCTGCACGGCGGGGACAGAG
GtcccgccgtggccgccagGGGGGTCAGGGGGGGCGTCCccgaggcggaa
gggggggaggaagcgagggagggaggggacgaagccGGCGGGTCCGAAAG
GAGCGAAAAAGGcgagcgcggggagggggagaggaggaaaggaggaaagc
tcTCGAGtaggcgcgggggaggggcccgaagtgggcgggcagggaggagg
ggagggactgggACACTCCTTCCCACtgacggggggggcgcaggTTTTTT
Ccccggcgggggaggagagggaagga
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Synonyms
Publications