rna7287, rna7287 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7287
Unique Name	rna7287
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3862
Alignment location	CM002471.1:244542..245774 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100077g17.5208.mrna
Orig protein id	gnl\|cribi\|Naga_100077g17.5208
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:244542..245774 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100077g17	gene7052	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7287	rna7287-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23418.1	cds7270	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:244542..245774+
coding sequence from alignment at CM002471.1:244542..245774+

mRNA sequence

>rna7287 ID=rna7287|Name=rna7287|organism=Nannochloropsis gaditana|type=mRNA|length=3862bp
CGTCGAGTCGCCGCACATGATATTCAATCCCATCCTTCACAACACAGATG
ACATGCCCGAGCCTAAAATCACATATGTGAGCTTATAGTATACACTGAGC
AGCCACGATGAGGAGGCTGCAGGCTTGGCCCCCTTGGATTGTGGCATCTT
TGATGGTAATATTCTTGCAGCTCGAGGAGAGCAGGATGGGTACGTCACCC
GTCTTATGGACGCCTGCAGCCGCTTTTAATCCGGTGCCCAATTTCCCGAA
GCCTTTTCAGTCGATAAGCAAGTGTACTAATTACATCAAGATCATGTTAG
TGGGTGGTGACAGCACGGATCTCAAGCCTTTGTGTCGTCTGTCTGCTTCC
TTGAGCACCAGTAGCCCCGTTACTACTCCTACGCCTATATTATGCAGCAA
TAACAGCCATAACTCTCGGGATTGTGTCGACCGACATGTCGTTAAGATTG
CCTCAAATCTGAGACAGAGTCTCAAGAAGAAGTCTGGCTCTGAGTCTGTC
GGAATACTCCAGAAAGAGCTCGAAATCGCACTTCGTAAAGATTGCTTGGA
CCCCTCCGCTTCGTCCAGTGTCCCGGGAGTGAAAAGCAAACGCCCCCGGA
AGACCAATTGGAAAAAGGCACGCCAGACACATGCATCGACAAGAAGGCTC
CTAGTGGCACTCGTGCGAGATTTTGCTCGGTATAATGTGGATCCAGGCGT
GACGTTTTGGAGCACCTTCGAGGCCTGGTTGGCTTTTCCTCGTGTTATTC
CTCCCACCGGGGAAATCGCTTCTCTTGTCCTTGCATTGGCCATCCTGGAC
GTCCCTCCAGGGAGCGAAGGCTTGCTGAACGCCGGCTTGCAGGCAGCATG
CACAGAGCGGACGGCGTCGCCCCGGACCATGGCGGTGGCCGATGCCCAAC
AATTCTGCAAGGCCCTGACGCTTCTGAGGGGCCCGGGTGCGACATTCCGC
GTCGGTCCCGCGGCTGGCATGGCTCGACTTCTAGCGTCTCTGGAGAGAGA
AGTACGCGCTGCAAAGTACCCTTCTCGTCGGGAGGATCGCACCCTTGTTC
TGCCCAAGCAGACCTCGGGGACTCGGTGGGTCCGACGGCCGTCACATGTC
TCCGCCCCACAGGCGGAGACGGAGCGAGTGCCCGCCCTGACATGCTCGCT
TCTACATCGACGCGTCTTGGATGCCTTGAGGACGGTCGGTCTGGTCTGCG
AAGACGAAGTGTGCCATGCCGGCCTCCGCCTCGACGTGGTGGTGTATCCC
CCCTCCATCCCTCCCTCGGCCCCGCCCTCTCTCTTTCGCCCTCGCCTGCC
CCTCGTCATCGAAATCGATGGCCCCCAGCATTTTATTCACGGCGACCCCA
CCCGTCCGACGGGGGCCACCGTCGCCCGGCATCGCTTTGTGCGGAGCCAG
CAGGACCAATGGGCCGGCCTTGTCAGCCTGACCCATGCCGACGCCCAGGG
AGAGAAAGGAAGGACACCTGTGGAGAGGCTCTTGGCAGTTTTGGAAGCAA
AAGTCCGAGAACAAGCAGGAGTGGAACTGGCGGGGTATCGGACAGGGGCT
GGAGGGGCCAAGGGGAATGGGGGGGAGGGCGAGCGTGTGGAGATGGAAGC
GTCGGGGGGGAGGGAGAGGAGAGGAGGTAATGCTGCGGCATACGAGGGGA
AAGGGAAGATGGAACAGGGAAAGACAACATATTTGGGCGTGGAAATGCAG
GCATGGGAGCTGAGCAAGCGCCTTCTAGTGAGCAGGTCATCTCAAGAGGT
GTTGTCCCTGGTGGAGGAAGCCAGGCAAGGACATCGTAGCAGCTTCCTGG
ACGCGTCGCATTTTGCGACGGCCTTGACCCGCTTGGCTCGGATTTCCACG
CGTGCCCCCCAGCCTCGTCTTTCTCGTCGTTCCAACAAAGCTGGACTTCG
TGCATCGAATGACCGCAATGCGGACAACAGGACGCATGGCACCGCCGGCA
ACGCTACCACCACCAACTACTTGAGCAACAGTAGCAGCAATGACACTATT
ATCGATAGCGACATTGACAGCTTTGGGAACAGGGAAAGTGGCATTTTCGG
TAGCATCAGCAGCAAAACGGGACAGAAGAAGGAGAGTGTCAATGGGTGCC
ACCGATGGGTCGGGGGTCCTGCCGGATTGTTGGGAAACACCACACAGGCC
CTGGCGATTATTGGTCAGGCGGATTTCCCAGCGTTAGCCCTGTTGATCGA
GGCAATGATACCATTTTACGAAGGCATCTTGGAGAAAAGAGGCGAGAAGG
GAGGGGACGGGTGTGCGGACGACAGTATCTGCGAGACCGAGAGGGAAATG
CTTGCCGTGGCGGAGGCTGCCATCGCACGCGTGGCGGAGTTAGAGCAGAG
ATCGATGGCTAGAGCAGAAGAGGAGACGAGAAAAGAGGACGGTGGGACAA
GACCCTTGCCAGGGGAAGCGATACGGTACTCGGCCCCGAAGAGTTCCACA
GGGGACAGAGACGCGCCTTGTGGCATCGATTTGTCCTCAGCACGCTACCC
GGAGGTCCTCATGACCTCCTGGAGCCTCGTGACCTTCCTTCACGCCATTT
CCAGGCTTGGATACCATTCTTGGTCCTTGCCGGTGTCGGCCTCGCGGATT
CAGACGATGATTTCCCGAGGGCAGTTGGACGCGCCGGCGCTTGTGTCGGT
GCTGACGAGCCTCACGATGATTTGTCTACGGATATCCACGCCTCCTGCTA
CCCTCCCACGGACAAATTCGTCGTGCATGCTCCCTGACTCCCCCTCGATG
CCAATCTCACAGCGCTGGGAGCTAACTTTTCCATTTTCCACCGCTGCCAC
GTCCATTTTACCCTCCACCGAGGGGGTTTTCGCTGCCGTGGATGCGCTCG
TTCAAGGTAGCTTGGGCCAACTCCACTTGCTTTCACCGCGGGATCTTGTC
TCCTTCGTTCGGGCCATTACACTTTTTGAAGAAGCTGGCTATGTTCTTGC
CACCTCCCTTGATTCGAGAGCTTGCCATGCCAATGCTCTTCCCAGCTCCG
ATGCCGGCCTGCCCTCGTTCCTTCCTTCTTCCTTCAGTCCGTACCAGGAC
GGAATTAAAGCAATGAGAACAGGAACATCCTCCCTTACGCCCCAGCCGAC
AAGAGAGCGCTTGATAACCAGCATCGTAGAGGCCGCAGGCAAGCCTCACA
TTAGTCAATCTTTATCACTCTCCGATCTGGCCGTGCTTACCCTCCGTGCA
CCGGCAGATGGAGAGCACGAAGAAGTCGTCAGTAATCAGCGGGACCGCCG
AAAATCGCCCCAATGGCCTCTGATCAAAGATGTCCGTCGGCGGCTGCGAT
CCATGTCACCCTCGGCTTTGGTCAAATTCTTGCTGTACGAGCTGCCCGTG
AGAAGCATGACGGAAGGGGCATGGAGACAAGAGCCATGCACGATCAGGCG
ACAGAAATTCCTGCGGAGAACATCGTTGATGCTCCAGCCCCGTCCGACCC
GGGCATTTCTAATGATGTTGACCAACGAACTGTACAAGCAACGGGCTGCA
TTGACTGTGAGAGAAAAAGCGTCGGTGATTGCACAACTGCGAGCCTGGGA
GGACATTTATGACCCTGGTACCCGTTTTTGGCAACGTTTCCCTTGACCGC
TAGATTTTTCCCTGCGCACCGTCTCTACTGCGTGTGACTAGGTCAAATAG
CCGATGAAATGCTCTCTTAATAAATCCAGTGACCCTTTTTCAAAAATAGG
ATGGCACCTTTTCCGAGGAAATCAAATAATGTACCATAGGGCGAGAAATG
GCTTGGAGCAAAAAATATTTATGATGTGTGTTTGCTAAGCACAAAACAAG
GTGCTCGTTCAACCTTTCAAATCATGGTATTGGAAAATAGATTATTCGTT
TTTTCTCATGTC

protein sequence of rna7287

>rna7287-protein ID=rna7287-protein|Name=rna7287|organism=Nannochloropsis gaditana|type=polypeptide|length=410bp
MLPRSPRCYKRPVGKILRPLFLLASIAGCTLAWRPLLSIVSSPSLVPRHL
LQSLQPAHGPAYALPRPSRLVSQASFSSQSSADDPIVDASDGVGRAVREE
ERMGPGAPEGYWSDVENIKHELDVFFTVRAAEERRLLEEKSGNPLRNYLG
LADEEQKRIRRRGALIDRDLYSDLRRYGFDYLVLPIMEQGGFRAFAAIFA
VNGDHPPREEQTGGLALGAALEAKLGTLSDKVSASVGKAGGEEGRKGQAP
VAALGREVLRTGPESWRYETDGLDPAQWKKGELDTTASPAPKLKSDVWKY
SGLSNPSKLYSALLLLDMAVAWGKATSGALDRGFLTPSLLSYIQLAAEVG
ILANLLSVPLTFLFVSKTGQPVEKAVSLALKAFVGGPVLLVECRFQGDFD
VLETRDIANK

mRNA from alignment at CM002471.1:244542..245774+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7287 ID=rna7287|Name=rna7287|organism=Nannochloropsis gaditana|type=mRNA|length=1233bp|location=Sequence derived from alignment at CM002471.1:244542..245774+ (Nannochloropsis gaditana)
ATGCTTCCTCGAAGCCCAAGATGTTATAAGCGTCCAGTAGGAAAAATTCT
ACGCCCGCTCTTCCTACTCGCGTCCATTGCTGGCTGTACCCTGGCATGGA
GGCCCCTCCTGTCCATTgtctcgtccccctccctcgtccctcgcCATCTC
CTACAATCCCTTCAGCCCGCCCACGGGCCCGCCTATGCACTCCCACGACC
ATCGAGGCTCGTGTCACaagcctccttctcatcccaGTCGTCCGCAGACG
ATCCTATTGTGGACGCGAGCGATGGGGTGGGGAGAGCGgtcagagaggag
gagcgcatgGGCCCCGGGGCGCCTGAAGGATACTGGTCCGACGTGGAAAA
TATCAAACATGAGCTGGATGTTTTCTTTACGGTCCGAGCGGCTGAGGAGC
GCCggcttttggaagaaaaATCCGGGAATCCCCTCCGGAACTACCTGGGC
CTCGCCGATGAAGAGCAGAAACGGATCCGACGCCGGGGTGCCTTGATCGA
TAGAGACCTGTACAGCGACCTCCGCCGATACGGCTTTGATTATCTGGTAC
TGCCTATCATGGAGCAAGGCGGTTTTAGGGCCTTTGCGGCCATCTTCGCC
GTCAACGGGGACCATCCCCCCCGGGAGGAACAGACAGGCGGCCTGGCCCT
GGGGGCGGCTTTGGAGGCTAAGTTGGGTACTTTGTCAGACAAAGTGTCGG
CCTCGGTGGGCAAAgccggtggggaggaaggacggaagggccAGGCACCC
GTGGCAGCGTTGGGCAGAGAGGTTCTCAGGACAGGCCCTGAATCCTGGCG
CTACGAGACAGACGGCTTGGATCCCGCCCagtggaagaaaggggaactGG
ACACTACTGCCTCGCCCGCACCCAAGCTCAAGAGCGACGTTTGGAAATAC
TCGGGGCTTTCCAACCCGAGTAAGCTGTACAGcgcgctgctcctcctcga
catgGCCGTGGCTTGGGGCAAAGCAACGTCAGGCGCGCTTGATCGTGGTT
TCCTtacgccctcccttctgtccTATATTCAGCTCGCTGCTGAGGTGGGA
ATACTGGCAAATCTCTTGAGCGTGCCCCTTACCTTCTTGTTCGTGTCGAA
AACTGGACAGCCGGTCGAGAAAGCCGTGTCCTTAGCCTTGAAAGCCTTTG
TGGGGGGACCGGTGTTGTTGGTGGAATGCCGCTTTCAAGGAGACTTTGAC
GTCCTCGAGACCAGAGATATAGCAAACAAGTGA

Coding sequence (CDS) from alignment at CM002471.1:244542..245774+

>rna7287 ID=rna7287|Name=rna7287|organism=Nannochloropsis gaditana|type=CDS|length=1233bp|location=Sequence derived from alignment at CM002471.1:244542..245774+ (Nannochloropsis gaditana)
ATGCTTCCTCGAAGCCCAAGATGTTATAAGCGTCCAGTAGGAAAAATTCT
ACGCCCGCTCTTCCTACTCGCGTCCATTGCTGGCTGTACCCTGGCATGGA
GGCCCCTCCTGTCCATTgtctcgtccccctccctcgtccctcgcCATCTC
CTACAATCCCTTCAGCCCGCCCACGGGCCCGCCTATGCACTCCCACGACC
ATCGAGGCTCGTGTCACaagcctccttctcatcccaGTCGTCCGCAGACG
ATCCTATTGTGGACGCGAGCGATGGGGTGGGGAGAGCGgtcagagaggag
gagcgcatgGGCCCCGGGGCGCCTGAAGGATACTGGTCCGACGTGGAAAA
TATCAAACATGAGCTGGATGTTTTCTTTACGGTCCGAGCGGCTGAGGAGC
GCCggcttttggaagaaaaATCCGGGAATCCCCTCCGGAACTACCTGGGC
CTCGCCGATGAAGAGCAGAAACGGATCCGACGCCGGGGTGCCTTGATCGA
TAGAGACCTGTACAGCGACCTCCGCCGATACGGCTTTGATTATCTGGTAC
TGCCTATCATGGAGCAAGGCGGTTTTAGGGCCTTTGCGGCCATCTTCGCC
GTCAACGGGGACCATCCCCCCCGGGAGGAACAGACAGGCGGCCTGGCCCT
GGGGGCGGCTTTGGAGGCTAAGTTGGGTACTTTGTCAGACAAAGTGTCGG
CCTCGGTGGGCAAAgccggtggggaggaaggacggaagggccAGGCACCC
GTGGCAGCGTTGGGCAGAGAGGTTCTCAGGACAGGCCCTGAATCCTGGCG
CTACGAGACAGACGGCTTGGATCCCGCCCagtggaagaaaggggaactGG
ACACTACTGCCTCGCCCGCACCCAAGCTCAAGAGCGACGTTTGGAAATAC
TCGGGGCTTTCCAACCCGAGTAAGCTGTACAGcgcgctgctcctcctcga
catgGCCGTGGCTTGGGGCAAAGCAACGTCAGGCGCGCTTGATCGTGGTT
TCCTtacgccctcccttctgtccTATATTCAGCTCGCTGCTGAGGTGGGA
ATACTGGCAAATCTCTTGAGCGTGCCCCTTACCTTCTTGTTCGTGTCGAA
AACTGGACAGCCGGTCGAGAAAGCCGTGTCCTTAGCCTTGAAAGCCTTTG
TGGGGGGACCGGTGTTGTTGGTGGAATGCCGCTTTCAAGGAGACTTTGAC
GTCCTCGAGACCAGAGATATAGCAAACAAGTGA

Synonyms

Publications