rna7276, rna7276 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7276
Unique Name	rna7276
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	805
Alignment location	CM002471.1:196746..198533 -

Link to JBrowse

Properties


Property Name	Value
Product	peptidase m48 ste24p
Orig transcript id	gnl\|cribi\|Naga_100077g5.5193.mrna
Orig protein id	gnl\|cribi\|Naga_100077g5.5193
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:196746..198533 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100077g5	gene7041	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7276	rna7276-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23403.1	cds7259	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:196746..198533-
coding sequence from alignment at CM002471.1:196746..198533-

mRNA sequence

>rna7276 ID=rna7276|Name=rna7276|organism=Nannochloropsis gaditana|type=mRNA|length=805bp
CGCAAGACCCGAAAAATGGTTGTAATCATCGATCCACTCCTTTTCACCGC
ATCCAGCCTAAACAACCGCTCCCCATGACATTAGTTCATAGCTTTTATAC
GAATCTCGACCATTGGGTCGTCCCTGTGCATGTTATCGTTCCTCAACACA
GCAGGATAAACTTCGGCGACACTTGGCACGTATTTCACTCGAAAAGGCAA
ACCTCTTCTCGCCGTACAGAATGGTCCAAATCGAAGCCAGGCTAGCACAG
CTAGGAATTGATTTGCCGGACGTTATCGCGCCGAAAGGAAACTACGCCCT
TGCAGTGAGGACTGGAAACTTATTGTTTTTGGCCGGGCACATCCCGCTTC
TTAAAAACGGCGTGCTGATGACTGGAAAGGTGGGTGCCGACAAGAGCCTG
GAGGAAGGACAAGAAGCAGCGCAGGTTATTGCAATTAACCTCCTGGCCAC
CCTGAAGTCGGAATTGGGGGACTTGGACAAGGTCAAGCGCATTGTCAAGC
TGGTAGGCTTCGTCAATTGTGTCGATGGTTTCAGTCAACAACCTATGGTC
GTGAACGGTGCCAGCGACTTTTTTGTCCAAGTCTTCGGCGACAAAGGCGT
GCATGCCCGGAGTGCCGTCGGCACCAACGCCCTCCCCTTGAACATTCCTG
TGGAGATCGAGGCAGTCGTGGAGGTAGAAGACTAGGAGAGGGCAGAAGCA
ACGAGGGCGAAGGAAACGAAAGGGCATGTCGCGGGTCAAGGAAGTGGATT
TGGCCTCTTTGAGGCCGAAAAATGTGAAAGAAACTAAACATACAGGGTAG
CACCA

protein sequence of rna7276

>rna7276-protein ID=rna7276-protein|Name=rna7276|organism=Nannochloropsis gaditana|type=polypeptide|length=414bp
MPETRHEFSENPYGGTFPMRLAHFSCVCLAISVVAFAQSAQGFTLRQKTV
LPPSTSTFSTSCAPWTGHFFTAKVTPRTTARVTASAVAPVHREKANDAVT
VPSSPARVILKGLRADRFRHPLDQQITEQLRLLPGLEWGVRQAMRVLEEA
VYIDNISSAILVGPTQMPSLHSSLVEAASILDLPVLPELYIKQSPVPNAY
CMAIQGRRPFIVVHTSLLDLLSPAEVQVVLAHELSHIKCEHGVFITAANA
LALGLYSLGGSLGRLLGDRLSSLLYAWLRAAEFSCDRGALLVSQDLDTVL
SALLKLVGGSQQLAGQLSTEAFLQQARSYDQAVGSPLGRLIKSQMEPGLT
HPLPVLRVRELERWYKSDMYTGIIARGSRRAVETGQDGGREGAGGDRGGQ
DGGERKGGSGAETV

mRNA from alignment at CM002471.1:196746..198533-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7276 ID=rna7276|Name=rna7276|organism=Nannochloropsis gaditana|type=mRNA|length=1788bp|location=Sequence derived from alignment at CM002471.1:196746..198533- (Nannochloropsis gaditana)
GCAGGTGCATATTTATTGAAACGTCTGTTCAAGTCGATTGGTATCCTTCC
AATGTCACAGGACTGTGTGCAGCATCCTTGCCACGCGGGTGGGTGTAAGC
ATCGTCAGCAGCGAGGAAGGTCGAAGAAGAACAAATCAATTGATGCACTT
GCTGTCCACCGCAATATCCGAAAGATAGAATGCCTGAAACACGGCATGAA
TTCTCCGAAAATCCGTACGGAGGCACTTTTCCAATGCGCCTCGCGCACTT
CAGTTGTGTATGCTTGGCTATTTCAGTGGTGGCGTTTGCCCAGTCAGCCC
AGGGGTTCACCTTGCGCCAGAAGACTGTCTTGCCCCCATCGACCTCAACA
TTTTCAACATCGTGTGCACCCTGGACGGGACACTTTTTCACAGCGAAAGG
TGCGTGACGTGTTGTGAGCAGACGTCCGGAATTCGGTCGTCATGGGCTTG
TCGACGGTGGGTGATACATATGCATGCCTGAGAGACTCGCGCCTACTTTG
CTTTCCCTTCCCTCCCAACATTGCACGCTATCCTTTCACATCAATTTTTC
AGTCACTCCGAGAACAACAGCACGTGTCACGGCATCCGCCGTTGCTCCCG
TCCACAGAGAGAAAGCTAATGACGCGGTGACGGTCCCAAGCTCCCCGGCA
CGAGTCATCTTGAAGGGGCTCCGCGCAGACAGGTTTCGGCACCCTCTCGA
CCAACAAATCACCGAGCAGGTTTGTCCCGTTGGTCGTTTGCACGCGGTCT
GCCTGAGCCAGAATCCCTGCGCCAGTGTGGGCGCGTTGGGTCTATCTGTC
CTCGTTTTCTGATCCCTCGTATGCCCGCTTTCTATCCTCCTTGCCCCCCT
CCTCCTTCATTCACAGCTGCGTCTCCTCCCAGGCTTGGAATGGGGCGTGC
GACAGGCCATGCGGGTATTGGAGGAAGCCGTGTACATTGACAACATAAGT
TCCGCCATCTTGGTCGGTCCCACCCAGATGCCCTCCTTGCACTCCTCCCT
CGTGGAAGCGGCCAGCATTTTGGACTTACCCGTCCTTCCCGAGCTGTACA
TCAAACAAAGCCCAGTCCCCAACGCCTACTGCATGGCCATTCAAGGCCGA
CGCCCCTTCATTGTCGTGCATACCTCCCTCCTGGATCTGTTGAGCCCGGC
CGAGGTGCAGGTCGTGCTCGCCCACGAACTCAGTCACATCAAATGCGAGC
ACGGCGTCTTCATCACCGCCGCCAATGCCTTGGCCCTGGGCCTGTACTCA
CTGGGTGGATCCTTGGGTCGTTTACTGGGCGATCGCCTGTCCAGCCTGCT
CTATGCCTGGCTCCGCGCCGCCGAGTTCTCCTGCGACCGTGGGGCGTTAC
TGGTCTCGCAAGATTTGGATACGGTCCTCTCTGCCCTGTTGAAGCTGGTA
GGAGGCAGCCAGCAATTGGCGGGGCAGCTCTCCACAGAGGCGTTTTTGCA
GCAGGCACGAAGCTACGACCAAGCGGTGGGGTCGCCCTTGGGCAGGTTAA
TCAAGAGCCAGATGGAGCCGGGGTTGACACATCCCTTGCCCGTCCTGAGG
GTCAGAGAGCTGGAGAGGTGGTACAAGAGTGACATGTATACAGGGATCAT
AGCCAGAGGAAGCCGGCGTGCGGTGGAGACGGGGCAGGATGGGGGAAGAG
AGGGAGCGGGAGGGGACAGAGGGGGACAGGACGGAGGGGAAAGGAAGGGA
GGAAGCGGCGCCGAGACCGTATGAGGTAGAAAATGCAGCCATTTACAGTC
GTTGAAAAATCCAATGATCATGTTTTGGTGCTACCCTG

Coding sequence (CDS) from alignment at CM002471.1:196746..198533-

>rna7276 ID=rna7276|Name=rna7276|organism=Nannochloropsis gaditana|type=CDS|length=3735bp|location=Sequence derived from alignment at CM002471.1:196746..198533- (Nannochloropsis gaditana)
CTGCGTCTCCTCCCAGGCTTGGAATGGGGCGTGCGACAGGCCATGCGGGT
ATTGGAGGAAGCCGTGTACATTGACAACATAAGTTCCGCCATCTTGGTCG
GTCCCACCCAGATGCCCTCCTTGCACTCCTCCCTCGTGGAAGCGGCCAGC
ATTTTGGACTTACCCGTCCTTCCCGAGCTGTACATCAAACAAAGCCCAGT
CCCCAACGCCTACTGCATGGCCATTCAAGGCCGACGCCCCTTCATTGTCG
TGCATACCTCCCTCCTGGATCTGTTGAGCCCGGCCGAGGTGCAGGTCGTG
CTCGCCCACGAACTCAGTCACATCAAATGCGAGCACGGCGTCTTCATCAC
CGCCGCCAATGCCTTGGCCCTGGGCCTGTACTCACTGGGTGGATCCTTGG
GTCGTTTACTGGGCGATCGCCTGTCCAGCCTGCTCTATGCCTGGCTCCGC
GCCGCCGAGTTCTCCTGCGACCGTGGGGCGTTACTGGTCTCGCAAGATTT
GGATACGGTCCTCTCTGCCCTGTTGAAGCTGGTAGGAGGCAGCCAGCAAT
TGGCGGGGCAGCTCTCCACAGAGGCGTTTTTGCAGCAGGCACGAAGCTAC
GACCAAGCGGTGGGGTCGCCCTTGGGCAGGTTAATCAAGAGCCAGATGGA
GCCGGGGTTGACACATCCCTTGCCCGTCCTGAGGGTCAGAGAGCTGGAGA
GGTGGTACAAGAGTGACATGTATACAGGGATCATAGCCAGAGGAAGCCGG
CGTGCGGTGGAGACGGGGCAGGATGGGGGAAGAGAGGGAGCGGGAGGGGA
CAGAGGGGGACAGGACGGAGGGGAAAGGAAGGGAGGAAGCGGCGCCGAGA
CCGTATGATCACTCCGAGAACAACAGCACGTGTCACGGCATCCGCCGTTG
CTCCCGTCCACAGAGAGAAAGCTAATGACGCGGTGACGGTCCCAAGCTCC
CCGGCACGAGTCATCTTGAAGGGGCTCCGCGCAGACAGGTTTCGGCACCC
TCTCGACCAACAAATCACCGAGCAGATGCCTGAAACACGGCATGAATTCT
CCGAAAATCCGTACGGAGGCACTTTTCCAATGCGCCTCGCGCACTTCAGT
TGTGTATGCTTGGCTATTTCAGTGGTGGCGTTTGCCCAGTCAGCCCAGGG
GTTCACCTTGCGCCAGAAGACTGTCTTGCCCCCATCGACCTCAACATTTT
CAACATCGTGTGCACCCTGGACGGGACACTTTTTCACAGCGAAAGCTGCG
TCTCCTCCCAGGCTTGGAATGGGGCGTGCGACAGGCCATGCGGGTATTGG
AGGAAGCCGTGTACATTGACAACATAAGTTCCGCCATCTTGGTCGGTCCC
ACCCAGATGCCCTCCTTGCACTCCTCCCTCGTGGAAGCGGCCAGCATTTT
GGACTTACCCGTCCTTCCCGAGCTGTACATCAAACAAAGCCCAGTCCCCA
ACGCCTACTGCATGGCCATTCAAGGCCGACGCCCCTTCATTGTCGTGCAT
ACCTCCCTCCTGGATCTGTTGAGCCCGGCCGAGGTGCAGGTCGTGCTCGC
CCACGAACTCAGTCACATCAAATGCGAGCACGGCGTCTTCATCACCGCCG
CCAATGCCTTGGCCCTGGGCCTGTACTCACTGGGTGGATCCTTGGGTCGT
TTACTGGGCGATCGCCTGTCCAGCCTGCTCTATGCCTGGCTCCGCGCCGC
CGAGTTCTCCTGCGACCGTGGGGCGTTACTGGTCTCGCAAGATTTGGATA
CGGTCCTCTCTGCCCTGTTGAAGCTGGTAGGAGGCAGCCAGCAATTGGCG
GGGCAGCTCTCCACAGAGGCGTTTTTGCAGCAGGCACGAAGCTACGACCA
AGCGGTGGGGTCGCCCTTGGGCAGGTTAATCAAGAGCCAGATGGAGCCGG
GGTTGACACATCCCTTGCCCGTCCTGAGGGTCAGAGAGCTGGAGAGGTGG
TACAAGAGTGACATGTATACAGGGATCATAGCCAGAGGAAGCCGGCGTGC
GGTGGAGACGGGGCAGGATGGGGGAAGAGAGGGAGCGGGAGGGGACAGAG
GGGGACAGGACGGAGGGGAAAGGAAGGGAGGAAGCGGCGCCGAGACCGTA
TGATCACTCCGAGAACAACAGCACGTGTCACGGCATCCGCCGTTGCTCCC
GTCCACAGAGAGAAAGCTAATGACGCGGTGACGGTCCCAAGCTCCCCGGC
ACGAGTCATCTTGAAGGGGCTCCGCGCAGACAGGTTTCGGCACCCTCTCG
ACCAACAAATCACCGAGCAGATGCCTGAAACACGGCATGAATTCTCCGAA
AATCCGTACGGAGGCACTTTTCCAATGCGCCTCGCGCACTTCAGTTGTGT
ATGCTTGGCTATTTCAGTGGTGGCGTTTGCCCAGTCAGCCCAGGGGTTCA
CCTTGCGCCAGAAGACTGTCTTGCCCCCATCGACCTCAACATTTTCAACA
TCGTGTGCACCCTGGACGGGACACTTTTTCACAGCGAAAGCTGCGTCTCC
TCCCAGGCTTGGAATGGGGCGTGCGACAGGCCATGCGGGTATTGGAGGAA
GCCGTGTACATTGACAACATAAGTTCCGCCATCTTGGTCGGTCCCACCCA
GATGCCCTCCTTGCACTCCTCCCTCGTGGAAGCGGCCAGCATTTTGGACT
TACCCGTCCTTCCCGAGCTGTACATCAAACAAAGCCCAGTCCCCAACGCC
TACTGCATGGCCATTCAAGGCCGACGCCCCTTCATTGTCGTGCATACCTC
CCTCCTGGATCTGTTGAGCCCGGCCGAGGTGCAGGTCGTGCTCGCCCACG
AACTCAGTCACATCAAATGCGAGCACGGCGTCTTCATCACCGCCGCCAAT
GCCTTGGCCCTGGGCCTGTACTCACTGGGTGGATCCTTGGGTCGTTTACT
GGGCGATCGCCTGTCCAGCCTGCTCTATGCCTGGCTCCGCGCCGCCGAGT
TCTCCTGCGACCGTGGGGCGTTACTGGTCTCGCAAGATTTGGATACGGTC
CTCTCTGCCCTGTTGAAGCTGGTAGGAGGCAGCCAGCAATTGGCGGGGCA
GCTCTCCACAGAGGCGTTTTTGCAGCAGGCACGAAGCTACGACCAAGCGG
TGGGGTCGCCCTTGGGCAGGTTAATCAAGAGCCAGATGGAGCCGGGGTTG
ACACATCCCTTGCCCGTCCTGAGGGTCAGAGAGCTGGAGAGGTGGTACAA
GAGTGACATGTATACAGGGATCATAGCCAGAGGAAGCCGGCGTGCGGTGG
AGACGGGGCAGGATGGGGGAAGAGAGGGAGCGGGAGGGGACAGAGGGGGA
CAGGACGGAGGGGAAAGGAAGGGAGGAAGCGGCGCCGAGACCGTATGATC
ACTCCGAGAACAACAGCACGTGTCACGGCATCCGCCGTTGCTCCCGTCCA
CAGAGAGAAAGCTAATGACGCGGTGACGGTCCCAAGCTCCCCGGCACGAG
TCATCTTGAAGGGGCTCCGCGCAGACAGGTTTCGGCACCCTCTCGACCAA
CAAATCACCGAGCAGATGCCTGAAACACGGCATGAATTCTCCGAAAATCC
GTACGGAGGCACTTTTCCAATGCGCCTCGCGCACTTCAGTTGTGTATGCT
TGGCTATTTCAGTGGTGGCGTTTGCCCAGTCAGCCCAGGGGTTCACCTTG
CGCCAGAAGACTGTCTTGCCCCCATCGACCTCAACATTTTCAACATCGTG
TGCACCCTGGACGGGACACTTTTTCACAGCGAAAG

Synonyms

Publications