rna7268, rna7268 (mRNA) Nannochloropsis gaditana

Overview
Namerna7268
Unique Namerna7268
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1362
Alignment locationCM002471.1:182143..183162 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100843g3.3626.mrna
Orig protein idgnl|cribi|Naga_100843g3.3626
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:182143..183162 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100843g3gene7033Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7268rna7268-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23422.1cds7251Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7268 ID=rna7268|Name=rna7268|organism=Nannochloropsis gaditana|type=mRNA|length=1362bp
TTTTCCCACCGCACACATCCACGCCAGGCCTATCGTAGATGAACTCCATG
GCTACGTTAGTTTCTTTCTAAGGACCGTCCTGGCTTCCTTTACAAAGAAA
ACCTGAAAAAGGCTGGGTGCCCTGCTCCTCGCCCTGTGCCGTGAGGGAAA
GGTTCGATGACGAAAGGGGGGAGGCAAATTTTCATGTTTTTGCCGCGTAA
AACCACGTCTAATAACCCCCACATAATCCCATCCTGGACCACAACAGGCC
CACGACCGACAGTCCTCACGCTGGGACGGCATGGAAACGACTAAGGACAG
AGGATGCGATCATGTGGCACAGGATGGTCGAACCTCTTACACTGCCCTTC
GTTTTGACAAAGCCGCCTTAGCGTGTCTTCCTCCTTCGGCGTGTGCAGCC
ATCGACAGCCTGGCTGCCTGCTCTGCCCGTGCCCAGGGACTGCGGAGGCC
CATCTCCACTATCCGCTCCCTTCAGGCATCAGATGATCACATTCTTTACA
TACTTGCCTCTACCGCGAGCAACGTCGCCGACACGCCTCCTCCCTCTGCT
TCTTTCTTGTCTTCCCCTCCTTTTGTACCCTCCCCGCCCTGCTCCCAGCC
CGCCGAGGCCGTGACACCCTCCACGTCCCCGCCGTACATCTTCATCCTAC
CGTCTTCTGCCTCCTTCATTGCCTTTGACCTGCCGCACGCTCCTTCATCC
CCTTCCTTGAGCAGTCCATTATCGCCATCCTCATCACTTCCATGCACGGC
GTCGACACCCTCCCCCGCTGCCTCTTTCCCTTCCTCCCCCTCCTCCTCTT
TCCTCGCCCTGGGCCTTCTCAAGCTAGGCCAAAAACACCTGTACCTGACA
AATCCTCAAGGACAGCTCGTCGAAACCAATCCCTTTTGCCTCCTCGACTT
CTTCATCGCCTCCCCCTGGCAACGGAAGGGTCTGGGCGCCTCCTTGTTGC
GCCTGGCGCTGTCTCACGAAGGGATTTCTGGGCCCCACTGTCTGGCCTTC
GACCGACCCTCCCCTCGACTCCTCCCCTTCCTAGCCAAGCACTTTGCCTT
GAAGAAACACCGGGCCCAGCACAACCATTTCCTTGTCTACGACGACTTTT
TCTCCCCCTTCCCTTCTCTCCCTTCCTGCTCCGTCACCTCCTCCTCCCCT
CCCTGCCCGCCCTGGTGCTCCTCTGGGGGGCCGTTGCCCTTTGTGAATAA
TCACTCTCTCGAATGAAGGTACGCACAGAGGACTCGTAGAATAGGACGGG
GAGGAGGAAAGCGAACAAAATACGCACAGGAAGAAGGAGGTATTGCGAAC
GAAGATGGCGAGGCCGGAAGTTTGAAAGAAATAAAAGGAAATTAAATTCC
CCCCGGCCCAAG
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protein sequence of rna7268

>rna7268-protein ID=rna7268-protein|Name=rna7268|organism=Nannochloropsis gaditana|type=polypeptide|length=230bp
MVGTEENVSPVLVPTILRDGTAAEGMMTDLEKNDVVKEKSQHPPTLLEGK
MQERKDGAAEDPIQDNELLQPAPGEEERVMPEEEGMPVDDAVSSNLPPSS
PPSPPLDNTASTTALEARAEGQGESSAEKEGHMENMHQGGTSAVEENMPS
TAGPAASSPPESTPEVMDSLEKGEEVSTTWGLGVITDIRAGSTPPAKGPG
ETYVVKALTWRMADGKAPTMFLQVDGGGGA
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mRNA from alignment at CM002471.1:182143..183162+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7268 ID=rna7268|Name=rna7268|organism=Nannochloropsis gaditana|type=mRNA|length=1020bp|location=Sequence derived from alignment at CM002471.1:182143..183162+ (Nannochloropsis gaditana)
GCACAGGGCGAGGAGCAGGGCACCCAGCCTTTTTCAGGTTTTCTTTGTAA
AGGAAGCCAGGACGGTCCTTAGAAAGAAACTAACGTAGCCATGGAGTTCA
TCTACGATAGGCCTGGCGTGGATGTGTGCGGTGGGAAAAGCCTAAATTGA
GTGCTGGCGTTCGGCGCTTTTGCGGTGCCCTGCGTGTGGGAGTATCATGT
CTCTTGTTCTATTCCTAACGCTTTTTCTATCCCACGTTTCCCCACGTATT
TTTCGCCCACACTGCGGCACCCGACGACATCACCTACGTTCATTGACGTA
AGTTAAGGTATTGCGACGTATTGGATTCATGGTTGGCACCGAAGAGAACG
TGTCGCCCGTGCTCGTCCCCACAATCTTGCGCGATGGAACAGCAGCAGAG
GGGATGATGACTGACCTGGAAAAAAACGACGTGGTCAAAGAGAAATCACA
ACACCCGCCAACTCTcttggaaggaaagatgCAAGAACGCAAGGATGGTG
CTGCCGAAGACCCCATCCAGGACAATGAACTCCTGCAACCTGCCcccggg
gaagaggagagggtcatgcctgaggaagaagggatgcCCGTCGACGACGC
TGTGTCGTCCAACTtgcctccgtcttctcccccatccccgccaTTGGACA
ACACGGCTTCTACAACCGCCttggaggcgcgggcggagggacaaggagaa
tcATCGGCCGAAAAAGAGGGACATATGGAAAACATGCATCAGGGAGGCAC
GAGTGCAGTGGAAGAGAATATGCCTTCCACGGCGGGGCCCGCGGCTTCCA
GCCCACCAGAAAGCACGCCCGAGGTCATGGACTCcctggaaaaaggcgag
gaagTGTCGACCACGTGGGGTTTGGGTGTCATCACAGACATTCGGGCCGG
GAGCACGCCGCCGGCAAAGGGCCCCGGGGAGACATACGTGGTCAAGGCCT
TGACCTGGCGCATGGCGGACGGCAAAGCGCCTACCATGTTCCTGCAGGta
gatggaggggggggcgcgaa
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Coding sequence (CDS) from alignment at CM002471.1:182143..183162+

>rna7268 ID=rna7268|Name=rna7268|organism=Nannochloropsis gaditana|type=CDS|length=692bp|location=Sequence derived from alignment at CM002471.1:182143..183162+ (Nannochloropsis gaditana)
ATGGTTGGCACCGAAGAGAACGTGTCGCCCGTGCTCGTCCCCACAATCTT
GCGCGATGGAACAGCAGCAGAGGGGATGATGACTGACCTGGAAAAAAACG
ACGTGGTCAAAGAGAAATCACAACACCCGCCAACTCTcttggaaggaaag
atgCAAGAACGCAAGGATGGTGCTGCCGAAGACCCCATCCAGGACAATGA
ACTCCTGCAACCTGCCcccggggaagaggagagggtcatgcctgaggaag
aagggatgcCCGTCGACGACGCTGTGTCGTCCAACTtgcctccgtcttct
cccccatccccgccaTTGGACAACACGGCTTCTACAACCGCCttggaggc
gcgggcggagggacaaggagaatcATCGGCCGAAAAAGAGGGACATATGG
AAAACATGCATCAGGGAGGCACGAGTGCAGTGGAAGAGAATATGCCTTCC
ACGGCGGGGCCCGCGGCTTCCAGCCCACCAGAAAGCACGCCCGAGGTCAT
GGACTCcctggaaaaaggcgaggaagTGTCGACCACGTGGGGTTTGGGTG
TCATCACAGACATTCGGGCCGGGAGCACGCCGCCGGCAAAGGGCCCCGGG
GAGACATACGTGGTCAAGGCCTTGACCTGGCGCATGGCGGACGGCAAAGC
GCCTACCATGTTCCTGCAGGtagatggaggggggggcgcgaa
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Synonyms
Publications