rna7254, rna7254 (mRNA) Nannochloropsis gaditana

Overview
Namerna7254
Unique Namerna7254
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length216
Alignment locationCM002471.1:127302..128644 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100778g3.4282.mrna
Orig protein idgnl|cribi|Naga_100778g3.4282
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:127302..128644 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100778g3gene7019Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7254rna7254-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23436.1cds7237Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7254 ID=rna7254|Name=rna7254|organism=Nannochloropsis gaditana|type=mRNA|length=216bp
ATGCTCACGAAGCCACGCTGTCTCACACGTGTGCACTACATACAGAGCCG
GGAGCAGGCGGTGCCACGAGGGAGGGAAGCACGAAGCGGCACCCGCAAGG
AAAAAGAAGCAGTCCTTCGGCTTCCTAGAACCCCTGTCCCCACCGTTACG
TTAGACCAACTGGACAGTACATCCCAGCGAAAAAGGAAGCAACATGACAC
GCGGGAATCAACGTGA
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protein sequence of rna7254

>rna7254-protein ID=rna7254-protein|Name=rna7254|organism=Nannochloropsis gaditana|type=polypeptide|length=424bp
MLAHAAQENLFLKENLFAFMNPDVKGKENNGPRSSSSVDGTTTKVQPHSL
RLSRRSRDRLHCTAQQTASLKSLESTNGEDGTVVRTESNSQVLPSPPLPP
RPDTVSVQVPEMRSRLGLLKGLSLRFISTQGRGWDCPLPPSHVPSPAGKT
VIKYVGAAFVDPATQAIKVQRGFTISLKVVDEAGEECGVSDNPRPWPGGG
VYYFERVILPTKGLWTLKLTARESRKAGVDTTGWVAHGDVAGQQATIFCG
EMPGQAFPADSLTTDLVPSVPPTLPIALGLGDAPVIALDYLGPRKNLGRK
DTRRAPRRTCSKEDLALALSVLEEEKVGSGGAGERKGGKRRRADGGGGEG
GRGEISAAQKALLRKFKSVPQDCRWLEFEALTAGRTAVVFSRRAWEWDLV
GMMEYRKPSGVREGGGEGGTLVGE
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mRNA from alignment at CM002471.1:127302..128644+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7254 ID=rna7254|Name=rna7254|organism=Nannochloropsis gaditana|type=mRNA|length=1343bp|location=Sequence derived from alignment at CM002471.1:127302..128644+ (Nannochloropsis gaditana)
CGTCATGGGTCACAACGTTATCTTCCTACCCCTCATACGCTTTGTGAAGT
CACAACGCTTACAACTCCATGCTCGCACATGCTGCACAGGAAAatctttt
tttaaaagagAACCTTTTCGCGTTTATGAATCCAGACGTAAAGGGCAAAG
AAAACAATGGCCCGAGATCAAGCAGCTCCGTCGATGGAACGACAACCAAG
GTCCAACCGCACTCCTTGCGTCTATCGCGTCGATCCCGCGATAGGCTGCA
TTGCACCGCCCAACAGACCGCGTCATTAAAATCTCTGGAGTCAACAAATG
GGGAAGATGGCACCGTGGTACGTACGGAAAGCAACTCACAggttcttccc
tctccccctttgcccccGCGTCCGGACACCGTCTCGGTGCAGGTTCCAGA
AATGAGGAGCCGCCTGGGCCTCCTGAAAGGCTTATCCCTCCGTTTCATTT
CCacgcaagggaggggttgggacTGTCCCTTGccaccctcccacgtcccg
tCCCCCGCGGGCAAAACCGTCATCAAATATGTGGGGGCTGCCTTTGTGGA
CCCAGCCACGCAGGCCATCAAGGTTCAACGGGGATTCACGATCTCCTTGA
AAGTGGTCGatgaggcaggggaagaatgTGGCGTCTCCGACAACCCCCGT
CCCTGGCCTGGTGGGGGCGTGTACTACTTCGAGAGGGTGATTTTGCCGAC
GAAGGGCCTCTGGACGTTGAAATTAACGGCACGGGAGAGCAGGAAAGCCG
GCGTCGACACGACCGGCTGGGTAGCGCACGGCGATGTGGCAGGGCAACAG
GCGACAATATTCTGCGGGGAGATGCCCGGACAGGCATTTCCGGCAGACAG
CCTGACCACGGACCTGgttccctcggtccctcccacgctcccCATCGCAC
TTGGCTTGGGCGATGCCCCTGTGATCGCCTTGGACTACTTAGGACCCCGG
AAAAATCTGGGACGaaaggatacccggagaGCCCCTCGACGGACCTGCAG
CAAGGAAGACTTGGCCCTGGCCTTGTcggtgttggaggaagagaaggtgg
ggagtggcggggcaggggagagaaagggagggaagcgacgGAGAGcggat
ggcggagggggggaaggagggaggggcgaaatATCGGCGGCTCAGAAGGC
CTTGCTGCGTAAGTTCAAGTCGGTGCCACAGGATTGTCGTTGGCTGGAAT
TCGAGGCGttgacggcggggaggacggccgTCGTCTTTTCTCGGAGAGCC
TGGGAGTGGGATCTGGTGGGGATGATGGAGTACCGCAAGCCCtcgggcgt
gagggagggagggggggagggaggcaccttGGTGGGCGAGTGA
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Coding sequence (CDS) from alignment at CM002471.1:127302..128644+

>rna7254 ID=rna7254|Name=rna7254|organism=Nannochloropsis gaditana|type=CDS|length=1275bp|location=Sequence derived from alignment at CM002471.1:127302..128644+ (Nannochloropsis gaditana)
ATGCTCGCACATGCTGCACAGGAAAatctttttttaaaagagAACCTTTT
CGCGTTTATGAATCCAGACGTAAAGGGCAAAGAAAACAATGGCCCGAGAT
CAAGCAGCTCCGTCGATGGAACGACAACCAAGGTCCAACCGCACTCCTTG
CGTCTATCGCGTCGATCCCGCGATAGGCTGCATTGCACCGCCCAACAGAC
CGCGTCATTAAAATCTCTGGAGTCAACAAATGGGGAAGATGGCACCGTGG
TACGTACGGAAAGCAACTCACAggttcttccctctccccctttgcccccG
CGTCCGGACACCGTCTCGGTGCAGGTTCCAGAAATGAGGAGCCGCCTGGG
CCTCCTGAAAGGCTTATCCCTCCGTTTCATTTCCacgcaagggaggggtt
gggacTGTCCCTTGccaccctcccacgtcccgtCCCCCGCGGGCAAAACC
GTCATCAAATATGTGGGGGCTGCCTTTGTGGACCCAGCCACGCAGGCCAT
CAAGGTTCAACGGGGATTCACGATCTCCTTGAAAGTGGTCGatgaggcag
gggaagaatgTGGCGTCTCCGACAACCCCCGTCCCTGGCCTGGTGGGGGC
GTGTACTACTTCGAGAGGGTGATTTTGCCGACGAAGGGCCTCTGGACGTT
GAAATTAACGGCACGGGAGAGCAGGAAAGCCGGCGTCGACACGACCGGCT
GGGTAGCGCACGGCGATGTGGCAGGGCAACAGGCGACAATATTCTGCGGG
GAGATGCCCGGACAGGCATTTCCGGCAGACAGCCTGACCACGGACCTGgt
tccctcggtccctcccacgctcccCATCGCACTTGGCTTGGGCGATGCCC
CTGTGATCGCCTTGGACTACTTAGGACCCCGGAAAAATCTGGGACGaaag
gatacccggagaGCCCCTCGACGGACCTGCAGCAAGGAAGACTTGGCCCT
GGCCTTGTcggtgttggaggaagagaaggtggggagtggcggggcagggg
agagaaagggagggaagcgacgGAGAGcggatggcggagggggggaagga
gggaggggcgaaatATCGGCGGCTCAGAAGGCCTTGCTGCGTAAGTTCAA
GTCGGTGCCACAGGATTGTCGTTGGCTGGAATTCGAGGCGttgacggcgg
ggaggacggccgTCGTCTTTTCTCGGAGAGCCTGGGAGTGGGATCTGGTG
GGGATGATGGAGTACCGCAAGCCCtcgggcgtgagggagggaggggggga
gggaggcaccttGGTGGGCGAGTGA
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Synonyms
Publications