rna7253, rna7253 (mRNA) Nannochloropsis gaditana

Overview
Namerna7253
Unique Namerna7253
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length784
Alignment locationCM002471.1:126412..126627 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100778g2.4284.mrna
Orig protein idgnl|cribi|Naga_100778g2.4284
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:126412..126627 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100778g2gene7018Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23438.1cds7236Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7253rna7253-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7253 ID=rna7253|Name=rna7253|organism=Nannochloropsis gaditana|type=mRNA|length=784bp
CCTCCCTCCCTCCCTCCCTCCCTCAGGCGGAGATCAAGCGCGACGCGCAG
TACGCCTTCCTGGATGTGGAGTGCCGGCGGGGCATGTCATTGGTCAGGGA
GAAGCTGCGGGGGAAAGGAGGGCGGGAGGGAGGGGGAGAGGATGTGCTGG
TAGAGGGGGAGGGCGAGGGGGAAGAAGAGGTTGTCAAGAGTCTGTGGTGG
AAGAGGACAGGGTGGCGAGGGCGTTTCTTGTGAGAGAGGGAGGAGGGAGG
GAGGGAGGGAAGAGGGTGTCCAAGTGTACAGCTTGTAAATAGGGCGATGG
GAGAGAAGACGGACGGGTTTGGGGGCATGTGCAGTTTTACTCTCAATTCA
TTCCGTTCCTGTCGCCAACCAGTCTCAACAAGTCCGACAAAGTCATATTT
AAAAAGTCAAATTCAAAGCACGCCTTCCGCCCCACCCTGGAGGCTGGGCA
ACCACCAGGCTGCGCATCCCGTGCATGGAAAAACAACGGCGGCAACGCAC
GATCGAGTGGGGTAAGGGCAAGGAAAGAGAAGCAAAAGTAATCATATAAG
GCGACCAATGGATGGGCACCATTCTGCGATAATCCGAAGGGGTGAGGGGA
GAGGAACGAGGCCTCACACCCTCTAGAGGGGAGGGGATAGGCCTGACAGC
CTCCCAGAGCCTGGACGTGTGCCCCAAGGTCGTGTCCACCCTCACGAACG
GGAAGAGGGAAAAGCACCAAAGAAGGATAGGCTCGAATGGGCAGCAGGCG
GGGAAAAGCCGCACAGGCAAAGGGTGGAGGAATC
back to top

protein sequence of rna7253

>rna7253-protein ID=rna7253-protein|Name=rna7253|organism=Nannochloropsis gaditana|type=polypeptide|length=71bp
MLTKPRCLTRVHYIQSREQAVPRGREARSGTRKEKEAVLRLPRTPVPTVT
LDQLDSTSQRKRKQHDTREST
back to top

mRNA from alignment at CM002471.1:126412..126627-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7253 ID=rna7253|Name=rna7253|organism=Nannochloropsis gaditana|type=mRNA|length=216bp|location=Sequence derived from alignment at CM002471.1:126412..126627- (Nannochloropsis gaditana)
ATGCTCACGAAGCCACGCTGTCTCACACGTGTGCACTACATACAGAGCCG
GGAGCAGGCGGTGCCACGAGGGAGGGAAGCACGAAGCGGCACCCGCAAGG
AAAAAGAAGCAGTCCTTCGGCTTCCTAGAACCCCTGTCCCCACCGTTACG
TTAGACCAACTGGACAGTACATCCCAGCGAAAAAGGAAGCAACATGACAC
GCGGGAATCAACGTGA
back to top

Coding sequence (CDS) from alignment at CM002471.1:126412..126627-

>rna7253 ID=rna7253|Name=rna7253|organism=Nannochloropsis gaditana|type=CDS|length=216bp|location=Sequence derived from alignment at CM002471.1:126412..126627- (Nannochloropsis gaditana)
ATGCTCACGAAGCCACGCTGTCTCACACGTGTGCACTACATACAGAGCCG
GGAGCAGGCGGTGCCACGAGGGAGGGAAGCACGAAGCGGCACCCGCAAGG
AAAAAGAAGCAGTCCTTCGGCTTCCTAGAACCCCTGTCCCCACCGTTACG
TTAGACCAACTGGACAGTACATCCCAGCGAAAAAGGAAGCAACATGACAC
GCGGGAATCAACGTGA
back to top
Synonyms
Publications