rna725, rna725 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna725
Unique Name	rna725
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1703
Alignment location	CM002456.1:265515..267957 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100247g5.2333.mrna
Orig protein id	gnl\|cribi\|Naga_100247g5.2333
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:265515..267957 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100247g5	gene694	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna725	rna725-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29950.1	cds725	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:265515..267957+
coding sequence from alignment at CM002456.1:265515..267957+

mRNA sequence

>rna725 ID=rna725|Name=rna725|organism=Nannochloropsis gaditana|type=mRNA|length=1703bp
TTGCTGGAAGTACCCCTGGGGCCATATTTGGTGACAGTATTGCGCGTGCA
CAGTCGGTTCTTCTTCAAGTAGCGAGAGAGAAGAAAAATATTTTATGACT
CGAAATACCACCGGAAAGAATAGAACATACAACTTTGATCCACATTCTCA
TTTTCATCCGACTCGTGGACACAGAATCCTTCGCGCTTAACCCTCTCACG
ACCATGCGTTCTTTTGCGTCCTTTGGAACCGTGGCCACTTTGCTCGTGGT
GTCTGTTGCCGGCATCGCGGCCAACATCAACACCTGTACTAGCAATTCTC
TCTTGAACATCCGTGGAGGCGGTTTCTTTGAGAAACTCGACTCCAAAATC
TCGTCGTGGACGAAGAGTGGCGATGAGGCCATTGATAGAGCCTCCAAGGC
GGTAGACTCTGCTTCCGACAGGACGAAAAACAAGATTGACGAGACTGATG
CCAGGCTAAAGAAAGCGCAGACGGATGCGGAGACAAAAGCCAAAAAGTAC
GCAGCAGACGCCAAGGTCAAGGCAGAGAAGACGAAGGCCGAGGCCAAGGT
AGGAGCGCTGCCTGAAGTCCCCTATTTCGCCCTTATCCTGCTCTTGAAGA
CGCGGTTTGTCGGACTTGTCAGGCCTCGTCTTGATGATTGCATGGCATCG
ACCAAAGTATCCTGCGTGTAATTTTTCATGGATCGATTGTTGAAGTTGGA
CCTTGCCCCATCATAGATTCTGCTCGTGTTTGCCTGTGGTCCAGTCTTTG
CTTTCTTGGCCTTGGAAGACCGCGCGTCCCACTTTTCTTTTGCTTTCTTT
CTCTCTCGATCCCTTACTGATGTTTGTAGGCCAAAGCACAACAAATGGCG
GATGAGGCCAAGGCAAGTGCAGAGAAGATGAAGGCCGACGCCAAGTCCGC
CGCCGACCGCACCCGGGCCAAGGTAGAGGAACAGAAGAAGAGGGCGCACG
CCGCGGCCGAAAGGGCCGAGAAGGAGGCAAACCGGCTCGCGGATCAGGCG
AAACATGCCAAGTCGGAATGGAAGGCTTCTGCCAAGAAGGCAGAGTCGGC
CTTGGACGACGGGATCGATCATGCCCGGGGCATCTTTGGAGGCATCAAAG
ATTTTTTCAAATAAACGGATGAGTAACACGACGGGCTGGGGTCACGGTGA
CTATGCAACGAAAGAGGAGGAGTTGGTCTGGCACCTTGGAGGGAGGAAAG
GGAGCGTTTCGTGCCTTGCATCTCTGGGGTTGGGTGGGATACTTGAACTC
GGATGCCTGATGCGATATGGGGGAATGATGCCTCTTGCAAGAGTGGTAAA
AATTGACGTTTAAATAATCTAAGGGTATATTACAGCCTAATGTATGGCCT
GAATACAGATCGGAAGAAGGGGAGAAAAGGATCGGGAGGGACAAGAAGGA
TCATAAGAACCAAGCACTTTCCACGCGTCGTATCACCACATTGTCCAACT
GGATATGAGAGAAGGGGCAACGAGGGTTTGAGAAGATTGGCAGTATGAAA
GGGGAGAAGATTGTAGGGAGCGTAGCCACATGGGCTATTCGGGCTTCGCA
ACCCCCAAAACAAACCACGACACTTACGTTCAAATCATGAAAAAGGGGGA
TGCGGGATAAAGCTTGTGAAGAATGGAGGAAACCCGTCGCTAAGGGGATC
GAAGGGAAATGGAAGAAGTAACGCAAGCAAACTCGGAGCCATCTGCTTTT
TGC

protein sequence of rna725

>rna725-protein ID=rna725-protein|Name=rna725|organism=Nannochloropsis gaditana|type=polypeptide|length=187bp
MRSFASFGTVATLLVVSVAGIAANINTCTSNSLLNIRGGGFFEKLDSKIS
SWTKSGDEAIDRASKAVDSASDRTKNKIDETDARLKKAQTDAETKAKKYA
ADAKVKAEKTKAEAKSAADRTRAKVEEQKKRAHAAAERAEKEANRLADQA
KHAKSEWKASAKKAESALDDGIDHARGIFGGIKDFFK

mRNA from alignment at CM002456.1:265515..267957+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna725 ID=rna725|Name=rna725|organism=Nannochloropsis gaditana|type=mRNA|length=2443bp|location=Sequence derived from alignment at CM002456.1:265515..267957+ (Nannochloropsis gaditana)
TTGCTGGAAGTACCCCTGGGGCCATATTTGGTGACAGTATTGCGCGTGCA
CAGTCGGTTCTTCTTCAAGTagcgagagagaagaaaaatatTTTATGACT
CGAAATACCACCGGAAAGAATAGAACATACAACTTTGATCCACATTCTCA
TTTTCATCCGACTCGTGGACACAGAATCCTTCGCGCTTAACCCTCTCACG
ACCATGCGTTCTTTTGCGTCCTTTGGAACCGTGGCCACTTTGCTCGTGGT
GTCTGTTGCCGGCATCGCGGCCAACATCAACACCTGTACTAGCAATTCTC
TCTTGAACATCCGTGGAGGCGGTTTCTTTGAGAAACTCGACTCCAAAATC
TCGTCGTGGACGAAGAGTGGCGATGAGGTAAGATATGTGGTCTCGAGCGA
AAGAATAAGGTCCATCGTGCGATGCCATCGACGTCGAACCTGATGGCAAA
TTGAAGATCTGCCCTCTTGCTGAttctcccacccttccgcGACTGCTTTC
TTTAGGCCATTGATAGAGCCTCCAAGGCGGTAGACTCTGCTTCCGACAGG
ACGAAAAACAAGATTGACGAGACTGATGCCAGGCTAAAGAAAGCGCAGAC
GGATGCGGAGGTAAtgatgggggaagaggggtgaCGTTGAAGTCCGTCGA
AGGGGGACGGATGCGTCCAAACGACCGAGCCAACGAAAAATGTGGACCCT
GATGCCAAACAATCAGTAGAGACAAGACGATGGTGACAAATATCCTGGGC
AAGACTTTAATGATTGCAGTAGATCACAGGCTTTGTGCCATATAGCGCTG
GCGAAGATTCGTCACTCTCGTTGCTCACgttcactcccttcctttccccc
tccgacTCGATACCCATCAGACAAAAGCCAAAAAGTACGCAGCAGACGCC
AAGGTCAAGGcagagaagacgaaggccgAGGCCAAGGTAGGAGCGCTGCC
TGAAGTCCCCTATTTCGCCCTTATCCTGCTCTTGAAGACGCGGTTTGTCG
GACTTGTCAGGCCTCGTCTTGATGATTGCATGGCATCGACCAAAGTATCC
TGCGTGTAATTTTTCATGGATCGATTGTTGAAGTTGGACCTTGCCCCATC
ATAGATTCTGCTCGTGTTTGCCTGTGGTCCAGTCTTTgctttcttggcct
tggaAGACCGCGCGTCCCActtttcttttgctttctttctctctcgaTCC
CTTACTGATGTTTGTAGGCCAAAGCACAACAAATGGCGGATGAGGCCAAG
GCAAGTGCAGAGAAGATGAAGGCCGACGCCAAGGTTAGAATCGTGATCCC
GCGTGCGTGCACAGGGCATGACAAGGATACGTACATGTGCACCGGCATGT
TTTGATAACAGGGCTGGCAGGCGATCTGAGATGTGGGAATACAGCGTGAG
AGTTACGCATGGCCGTGCATTGTGcggtgcccctcccttcagggaggtgg
gaaatCGACGTGACACAGGCTCCCCTACCCCTCCGCCGTTCCCTGTCCCG
GCCTCGTTCTGCGCGAGCCAGCCTGCTGCTTTCTGGTTTCTTCCAATACA
TAACGTAGCAAGACCATGCACCGTATTTAAtttcctcgttcccttcctct
ttcctttatcctccttctttctcttttccccccagTCCGCCGCCGACCGC
ACCCGGGCCAAGGTAGAGGaacagaagaagagggcgcACGCCGCGGCCGA
AagggccgagaaggaggcaaaCCGGCTCGCGGATCAGGCGAAACATGCCA
AGTCGGAATGGAAGGCTTCTGCCAAGAAGGCAGAGTCGGCCTTGGACGAC
GGGATCGATCATGCCCGGGGCATCTTTGGAGGCATCAAAGATTTTTTCAA
ATAAACGGATGAGTAACACGACGGGCTGGGGTCACGGTGACTATGCaacg
aaagaggaggagttggtCTGGCaccttggagggaggaaagggagcgttTC
GTGCCTTGCATCTCTGGGGTTGGGTGGGATACTTGAACTCGGATGCCTGA
TGCGATATGGGGGAATGATGCCTCTTGCAAGAGTGGTAAAAATTGACGTT
TAAATAATCTAAGGGTATATTACAGCCTAATGTATGGCCTGAATACAGat
cggaagaaggggagaaaaggatcgggagggacaagaaggatCATAAGAAC
CAAGCACTTTCCACGCGTCGTATCACCACATTGTCCAACTGGATATGAGA
GAAGGGGCAACGAGGGTTTGAGAAGATTGGCAGTatgaaaggggagaaga
ttGTAGGGAGCGTAGCCACATGGGCTATTCGGGCTTCGCAACCCCCAAAA
CAAACCACGACACTTACGTTCAAATCATGAAAAAGGGGGATGCGGGATAA
AGCTTGTGAAGAATGGAGGAAACCCGTCGCTAAGGGGATCgaagggaaat
ggaagaagtAACGCAAGCAAACTCGGAGCCATCTGCTTTTTGC

Coding sequence (CDS) from alignment at CM002456.1:265515..267957+

>rna725 ID=rna725|Name=rna725|organism=Nannochloropsis gaditana|type=CDS|length=2256bp|location=Sequence derived from alignment at CM002456.1:265515..267957+ (Nannochloropsis gaditana)
ATGCGTTCTTTTGCGTCCTTTGGAACCGTGGCCACTTTGCTCGTGGTGTC
TGTTGCCGGCATCGCGGCCAACATCAACACCTGTACTAGCAATTCTCTCT
TGAACATCCGTGGAGGCGGTTTCTTTGAGAAACTCGACTCCAAAATCTCG
TCGTGGACGAAGAGTGGCGATGAGGCCATTGATAGAGCCTCCAAGGCGGT
AGACTCTGCTTCCGACAGGACGAAAAACAAGATTGACGAGACTGATGCCA
GGCTAAAGAAAGCGCAGACGGATGCGGAGACAAAAGCCAAAAAGTACGCA
GCAGACGCCAAGGTCAAGGcagagaagacgaaggccgAGGCCAAGTCCGC
CGCCGACCGCACCCGGGCCAAGGTAGAGGaacagaagaagagggcgcACG
CCGCGGCCGAAagggccgagaaggaggcaaaCCGGCTCGCGGATCAGGCG
AAACATGCCAAGTCGGAATGGAAGGCTTCTGCCAAGAAGGCAGAGTCGGC
CTTGGACGACGGGATCGATCATGCCCGGGGCATCTTTGGAGGCATCAAAG
ATTTTTTCAAATAAATGCGTTCTTTTGCGTCCTTTGGAACCGTGGCCACT
TTGCTCGTGGTGTCTGTTGCCGGCATCGCGGCCAACATCAACACCTGTAC
TAGCAATTCTCTCTTGAACATCCGTGGAGGCGGTTTCTTTGAGAAACTCG
ACTCCAAAATCTCGTCGTGGACGAAGAGTGGCGATGAGGCCATTGATAGA
GCCTCCAAGGCGGTAGACTCTGCTTCCGACAGGACGAAAAACAAGATTGA
CGAGACTGATGCCAGGCTAAAGAAAGCGCAGACGGATGCGGAGACAAAAG
CCAAAAAGTACGCAGCAGACGCCAAGGTCAAGGcagagaagacgaaggcc
gAGGCCAAGTCCGCCGCCGACCGCACCCGGGCCAAGGTAGAGGaacagaa
gaagagggcgcACGCCGCGGCCGAAagggccgagaaggaggcaaaCCGGC
TCGCGGATCAGGCGAAACATGCCAAGTCGGAATGGAAGGCTTCTGCCAAG
AAGGCAGAGTCGGCCTTGGACGACGGGATCGATCATGCCCGGGGCATCTT
TGGAGGCATCAAAGATTTTTTCAAATAAATGCGTTCTTTTGCGTCCTTTG
GAACCGTGGCCACTTTGCTCGTGGTGTCTGTTGCCGGCATCGCGGCCAAC
ATCAACACCTGTACTAGCAATTCTCTCTTGAACATCCGTGGAGGCGGTTT
CTTTGAGAAACTCGACTCCAAAATCTCGTCGTGGACGAAGAGTGGCGATG
AGGCCATTGATAGAGCCTCCAAGGCGGTAGACTCTGCTTCCGACAGGACG
AAAAACAAGATTGACGAGACTGATGCCAGGCTAAAGAAAGCGCAGACGGA
TGCGGAGACAAAAGCCAAAAAGTACGCAGCAGACGCCAAGGTCAAGGcag
agaagacgaaggccgAGGCCAAGTCCGCCGCCGACCGCACCCGGGCCAAG
GTAGAGGaacagaagaagagggcgcACGCCGCGGCCGAAagggccgagaa
ggaggcaaaCCGGCTCGCGGATCAGGCGAAACATGCCAAGTCGGAATGGA
AGGCTTCTGCCAAGAAGGCAGAGTCGGCCTTGGACGACGGGATCGATCAT
GCCCGGGGCATCTTTGGAGGCATCAAAGATTTTTTCAAATAAATGCGTTC
TTTTGCGTCCTTTGGAACCGTGGCCACTTTGCTCGTGGTGTCTGTTGCCG
GCATCGCGGCCAACATCAACACCTGTACTAGCAATTCTCTCTTGAACATC
CGTGGAGGCGGTTTCTTTGAGAAACTCGACTCCAAAATCTCGTCGTGGAC
GAAGAGTGGCGATGAGGCCATTGATAGAGCCTCCAAGGCGGTAGACTCTG
CTTCCGACAGGACGAAAAACAAGATTGACGAGACTGATGCCAGGCTAAAG
AAAGCGCAGACGGATGCGGAGACAAAAGCCAAAAAGTACGCAGCAGACGC
CAAGGTCAAGGcagagaagacgaaggccgAGGCCAAGTCCGCCGCCGACC
GCACCCGGGCCAAGGTAGAGGaacagaagaagagggcgcACGCCGCGGCC
GAAagggccgagaaggaggcaaaCCGGCTCGCGGATCAGGCGAAACATGC
CAAGTCGGAATGGAAGGCTTCTGCCAAGAAGGCAGAGTCGGCCTTGGACG
ACGGGATCGATCATGCCCGGGGCATCTTTGGAGGCATCAAAGATTTTTTC
AAATAA

Synonyms

Publications