rna7243, rna7243 (mRNA) Nannochloropsis gaditana

Overview
Namerna7243
Unique Namerna7243
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length841
Alignment locationCM002471.1:108636..110195 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101389g1.4400.mrna
Orig protein idgnl|cribi|Naga_101389g1.4400
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:108636..110195 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101389g1gene7009Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7243rna7243-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23447.1cds7226Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7243 ID=rna7243|Name=rna7243|organism=Nannochloropsis gaditana|type=mRNA|length=841bp
TGGCCATGAGCTTTCCCGCCGTGCCTCTCCATGCATGTCCAGTGCGCGGA
AAGCCTTGTGCATGTACTTGCCCTTCTAAGAGCAGGATTGTATTATGGCT
CAACATCAGCTAATTCCCTTTTCTCGTACGCTTTGGTCCGCTCATTCCCT
TTACTGTGGGTACACAGGGACAGGGGCACGACCTGGCCATTGGACACGAC
GGCATCTCTGTGTCAGCCTGAGAGATCCTCAAGGCCCTTCTTCTCTGTCT
ATTCGTGTAGATTTAAACCTCGATATGGCTACGTCAGAGTGGGGGGAAGA
GGTTGCCCGCAGGTTGGGTGCGCTCAAGAAGCGGCAGGAAGAGGAAGAGG
AGGACGATTTCTCTCCCGAGGAGGACGCGAGTGAGGTGGAGGAGGAGGAA
GAAGAGGAGGAGGAAGAAGAGGAGAAGATCCTCAATGCACCCGGTCGACG
TCTGAGTGGGCGGACAAAGCGTGGGACCGCCGCCAAGAAGCATGGTGGTC
AGGAGACCGACACGGAGGATTCGGAATGGGCCACAGGCAGCGACGGCGTG
CGCCGACGCCGGAAGCAATTGACGCAAAAATGGACGCAGGAGGAGGACAC
CATACTGGCAGAGCTGGTCCGTATCCATGGGCAAAGGGACTGGGGCTTGG
TTGCCAGCCATATGCCGGGCAACATTCGGAAGGGGAAGCAATGCCGGGAG
CGTTGGCGGAACCAGTTGGACCCGAACATCAAGCGCGACCCCTGGACGCC
GGAGGAGGAACGGATGCTGATCGAAGCGCATGCCAAGTGGGGCAACAAGT
GGGCGGACATTGCCAAGCTCTTGCCGGGACGGACGGATAAC
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protein sequence of rna7243

>rna7243-protein ID=rna7243-protein|Name=rna7243|organism=Nannochloropsis gaditana|type=polypeptide|length=261bp
MKAFLRPEYAKRTKLPWLHVFVCCLGVFCLLPDIKAFSPCLHLPGSSFLP
TVLEPQARLGGRGRRIRVGTCLQCENYEHGAHGAVQSSHEGQTDHVCQGK
PALTCNEDPVVTKKGEKRGLDRVRSSKGLPGREEGEGGNVVELLKASSAV
LLAAIGPNPWDRGLGINPTPPSALAMWGPYVGTLLFLTFGMRGLEPLKRF
LYDRQKRRKQAKKAAQKPKKNQYYRTPSRLYDLAKAKLEQRQEGGTEAGA
EGGRAGGRELQ
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mRNA from alignment at CM002471.1:108636..110195-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7243 ID=rna7243|Name=rna7243|organism=Nannochloropsis gaditana|type=mRNA|length=1560bp|location=Sequence derived from alignment at CM002471.1:108636..110195- (Nannochloropsis gaditana)
GGATACAGGTGCATTGGCGGGACGTGGTTGGCTTGCTGTTCAAGTGCTGG
TGCTTTGCCGCCTCCTACTAGGAGCTTCAAGGCTGCATCATGAAAGCTTT
CTTGCGCCCAGAGTATGCAAAAAGGACAAAGCTGCCGTGGCTCCACGTCT
TTGTGTGTTGTCTAGGCGTTTTTTGCCTCCTCCCTGACATAAAAGCCTTC
TCTCCCTGCCTCCACCTCCCCGGCTCCTCCTTCCTACCTACCGTATTGGA
GCCACAAGCCCGCCTGGGTGGTCGAGGACGAAGAATAAGGGTAGGAACAT
GCCTACAATGTGAAAACTACGAACATGGAGCCCATGGAGCCGTGCAATCG
TCGCACGAAGGACAGGTAGTCTTTGAGATAGTCTGTTGATCACACAAATT
CTTGTGCAACCTCCCCCCTCTCTCCCTCCCTACCTACCTACCTCCCTTCC
TCTGCGATTCCTCTCATCGCCCCCTGCATTTCCACCAGACTGATCATGTT
TGCCAGGGCAAGCCAGCATTGACATGCAATGAAGACCCCGTGGTAACAAA
AAAGGGCGAGAAGAGGGGCCTGGACAGGGTGCGTTCCTCCAAGGGCCTTC
CAGGAAGGGAAGAGGGAGAAGGAGGGAATGTGGTCGAGCTCTTGAAAGCC
AGCAGCGCTGTCCTCTTGGCGGCGATAGGACCGAATCCATGGGACAGGTC
CGTGGCACCGTTCCCTCCCTCCCTCCCTCAATCCCTCCCTCCCTGTCTCG
CTTCTCTCCCTCTTGTCGACCGACACTCGCCCTCCTTCATCTCCTCTTTC
CCTTTCTCCGTTCCCCCTGCCCCGACTTGTTCCCTCCCTCAACCCACACC
TGGCCTTCCCCTTTCTCCCTCCCTCCCTCCCACCCTCCCTCCCTCCCTCC
CTCCCTCCAGAGGCCTGGGCATCAACCCGACCCCGCCGAGCGCCTTGGCC
ATGTGGGGGCCTTACGTCGGGACGCTCCTCTTCCTCACATTTGGGATGCG
GGGGCTGGAGCCACTGAAGCGCTTCCTCTACGACCGGCAGAAACGGAGGA
AGCAGGCGAAGAAGGGTGAGGGAGAAAGGGAGGGAGGAAGCAAAGGAAGC
ACAGGAAGGAAGGACGGACTCATTTACTCAAGCTTGTTCCTCCTGTCTTT
CCCTCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCTCCCCCT
CGCCCCCTCCGGATCGCAGCCGCCCAAAAGCCCAAGAAGAACCAGTACTA
CCGCACCCCTTCCCGGCTCTACGACCTGGCCAAGGCCAAGCTTGAGCAGA
GGCAGGAGGGAGGGACGGAAGCAGGTGCGGAGGGAGGGAGGGCGGGAGGG
AGGGAGTTGCAGTAGCACGACCGGATGCCAGGGCAACAAGGAGCGAGGGG
CGAAGAGAGAGAAGCGGTGGTGGTTTGTAAGCTTGTTCTCATTCACGTGC
ATCCCTCCCATCCTCCCTCTCTCCCTTCCACCCTCCCTTCCTCCCTCCCT
TCCTTTTTCCCTCCCCATACCCCACGCAGTCGAAGGGACCTCGGATACGG
CTGCCAGTGG
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Coding sequence (CDS) from alignment at CM002471.1:108636..110195-

>rna7243 ID=rna7243|Name=rna7243|organism=Nannochloropsis gaditana|type=CDS|length=3144bp|location=Sequence derived from alignment at CM002471.1:108636..110195- (Nannochloropsis gaditana)
CCGCCCAAAAGCCCAAGAAGAACCAGTACTACCGCACCCCTTCCCGGCTC
TACGACCTGGCCAAGGCCAAGCTTGAGCAGAGGCAGGAGGGAGGGACGGA
AGCAGGTGCGGAGGGAGGGAGGGCGGGAGGGAGGGAGTTGCAGTAGAGGC
CTGGGCATCAACCCGACCCCGCCGAGCGCCTTGGCCATGTGGGGGCCTTA
CGTCGGGACGCTCCTCTTCCTCACATTTGGGATGCGGGGGCTGGAGCCAC
TGAAGCGCTTCCTCTACGACCGGCAGAAACGGAGGAAGCAGGCGAAGAAG
GACTGATCATGTTTGCCAGGGCAAGCCAGCATTGACATGCAATGAAGACC
CCGTGGTAACAAAAAAGGGCGAGAAGAGGGGCCTGGACAGGGTGCGTTCC
TCCAAGGGCCTTCCAGGAAGGGAAGAGGGAGAAGGAGGGAATGTGGTCGA
GCTCTTGAAAGCCAGCAGCGCTGTCCTCTTGGCGGCGATAGGACCGAATC
CATGGGACAGATGAAAGCTTTCTTGCGCCCAGAGTATGCAAAAAGGACAA
AGCTGCCGTGGCTCCACGTCTTTGTGTGTTGTCTAGGCGTTTTTTGCCTC
CTCCCTGACATAAAAGCCTTCTCTCCCTGCCTCCACCTCCCCGGCTCCTC
CTTCCTACCTACCGTATTGGAGCCACAAGCCCGCCTGGGTGGTCGAGGAC
GAAGAATAAGGGTAGGAACATGCCTACAATGTGAAAACTACGAACATGGA
GCCCATGGAGCCGTGCAATCGTCGCACGAAGGACAGCCGCCCAAAAGCCC
AAGAAGAACCAGTACTACCGCACCCCTTCCCGGCTCTACGACCTGGCCAA
GGCCAAGCTTGAGCAGAGGCAGGAGGGAGGGACGGAAGCAGGTGCGGAGG
GAGGGAGGGCGGGAGGGAGGGAGTTGCAGTAGAGGCCTGGGCATCAACCC
GACCCCGCCGAGCGCCTTGGCCATGTGGGGGCCTTACGTCGGGACGCTCC
TCTTCCTCACATTTGGGATGCGGGGGCTGGAGCCACTGAAGCGCTTCCTC
TACGACCGGCAGAAACGGAGGAAGCAGGCGAAGAAGGACTGATCATGTTT
GCCAGGGCAAGCCAGCATTGACATGCAATGAAGACCCCGTGGTAACAAAA
AAGGGCGAGAAGAGGGGCCTGGACAGGGTGCGTTCCTCCAAGGGCCTTCC
AGGAAGGGAAGAGGGAGAAGGAGGGAATGTGGTCGAGCTCTTGAAAGCCA
GCAGCGCTGTCCTCTTGGCGGCGATAGGACCGAATCCATGGGACAGATGA
AAGCTTTCTTGCGCCCAGAGTATGCAAAAAGGACAAAGCTGCCGTGGCTC
CACGTCTTTGTGTGTTGTCTAGGCGTTTTTTGCCTCCTCCCTGACATAAA
AGCCTTCTCTCCCTGCCTCCACCTCCCCGGCTCCTCCTTCCTACCTACCG
TATTGGAGCCACAAGCCCGCCTGGGTGGTCGAGGACGAAGAATAAGGGTA
GGAACATGCCTACAATGTGAAAACTACGAACATGGAGCCCATGGAGCCGT
GCAATCGTCGCACGAAGGACAGCCGCCCAAAAGCCCAAGAAGAACCAGTA
CTACCGCACCCCTTCCCGGCTCTACGACCTGGCCAAGGCCAAGCTTGAGC
AGAGGCAGGAGGGAGGGACGGAAGCAGGTGCGGAGGGAGGGAGGGCGGGA
GGGAGGGAGTTGCAGTAGAGGCCTGGGCATCAACCCGACCCCGCCGAGCG
CCTTGGCCATGTGGGGGCCTTACGTCGGGACGCTCCTCTTCCTCACATTT
GGGATGCGGGGGCTGGAGCCACTGAAGCGCTTCCTCTACGACCGGCAGAA
ACGGAGGAAGCAGGCGAAGAAGGACTGATCATGTTTGCCAGGGCAAGCCA
GCATTGACATGCAATGAAGACCCCGTGGTAACAAAAAAGGGCGAGAAGAG
GGGCCTGGACAGGGTGCGTTCCTCCAAGGGCCTTCCAGGAAGGGAAGAGG
GAGAAGGAGGGAATGTGGTCGAGCTCTTGAAAGCCAGCAGCGCTGTCCTC
TTGGCGGCGATAGGACCGAATCCATGGGACAGATGAAAGCTTTCTTGCGC
CCAGAGTATGCAAAAAGGACAAAGCTGCCGTGGCTCCACGTCTTTGTGTG
TTGTCTAGGCGTTTTTTGCCTCCTCCCTGACATAAAAGCCTTCTCTCCCT
GCCTCCACCTCCCCGGCTCCTCCTTCCTACCTACCGTATTGGAGCCACAA
GCCCGCCTGGGTGGTCGAGGACGAAGAATAAGGGTAGGAACATGCCTACA
ATGTGAAAACTACGAACATGGAGCCCATGGAGCCGTGCAATCGTCGCACG
AAGGACAGCCGCCCAAAAGCCCAAGAAGAACCAGTACTACCGCACCCCTT
CCCGGCTCTACGACCTGGCCAAGGCCAAGCTTGAGCAGAGGCAGGAGGGA
GGGACGGAAGCAGGTGCGGAGGGAGGGAGGGCGGGAGGGAGGGAGTTGCA
GTAGAGGCCTGGGCATCAACCCGACCCCGCCGAGCGCCTTGGCCATGTGG
GGGCCTTACGTCGGGACGCTCCTCTTCCTCACATTTGGGATGCGGGGGCT
GGAGCCACTGAAGCGCTTCCTCTACGACCGGCAGAAACGGAGGAAGCAGG
CGAAGAAGGACTGATCATGTTTGCCAGGGCAAGCCAGCATTGACATGCAA
TGAAGACCCCGTGGTAACAAAAAAGGGCGAGAAGAGGGGCCTGGACAGGG
TGCGTTCCTCCAAGGGCCTTCCAGGAAGGGAAGAGGGAGAAGGAGGGAAT
GTGGTCGAGCTCTTGAAAGCCAGCAGCGCTGTCCTCTTGGCGGCGATAGG
ACCGAATCCATGGGACAGATGAAAGCTTTCTTGCGCCCAGAGTATGCAAA
AAGGACAAAGCTGCCGTGGCTCCACGTCTTTGTGTGTTGTCTAGGCGTTT
TTTGCCTCCTCCCTGACATAAAAGCCTTCTCTCCCTGCCTCCACCTCCCC
GGCTCCTCCTTCCTACCTACCGTATTGGAGCCACAAGCCCGCCTGGGTGG
TCGAGGACGAAGAATAAGGGTAGGAACATGCCTACAATGTGAAAACTACG
AACATGGAGCCCATGGAGCCGTGCAATCGTCGCACGAAGGACAG
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Synonyms
Publications