rna7240, rna7240 (mRNA) Nannochloropsis gaditana

Overview
Namerna7240
Unique Namerna7240
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1857
Alignment locationCM002471.1:98012..99282 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100945g1.7418.mrna
Orig protein idgnl|cribi|Naga_100945g1.7418
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:98012..99282 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100945g1gene7005Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7240rna7240-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23450.1cds7223Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7240 ID=rna7240|Name=rna7240|organism=Nannochloropsis gaditana|type=mRNA|length=1857bp
GGAGATCCACAGGCGAACAAGCGAGGGCGGGAAGACAAGGGCAGGCCCCA
TGCAGGGTCTTGGACGGCGCATAGTAGCCCTTTAGTCGCCGGGCGTCGCT
TTCCTGCCCCGCTCTTCTCCCCCGCGTCCCCCTCCTCGGCCAGTCCTCCC
TCCCTCCCTCCCTCCCGCCACGCCTGCTCCTCCCCCTCCTCGCTCGCACA
CCTGGCCTCCATGCCCCTCCCCACCCATGAGCCCCATTTCGGATCCCTCT
CAAAAGGAAGTCAACAGCCAGCCCACCTTCTCCAGGCAGGCGGATCCACA
GCGGGTTGCCTTCACCTTAACATGGACGTTCGGACGGAAACCTACTGCGG
TTCCTCGCCCCGGGGGGGGGGGCGGACTTCTTGGCCCTTTTCGCCGCCAG
CCATATCTCGTCCTCCCTTCCTTTCTCTGGCCTAACTGTCGAAGCCCCTC
CGTACGTGGCAGGAGCAGCGGGTATTCCCTCCACCTGCACCACCAGCACC
CTGTCCATGACACCTTCCTCCCCCGGCGCCTCCCCCCCGTCCTCCTCCTC
CTCGTCTTCCTCCGACCCGGCTTGCTCGGACACCACGGACATAGCCTCCC
TCCTCCAAAACGTGTGCGAGGAAGCAGACAAGGACACCGGAAAGATGTGT
CATCCCAGTCGCAGCCCCAGCGACCCCCACCCTCCGTCACAGACCACTCG
GGCCCATGGTTTTTCCTCCTCCGCTTTCCCCCCCTCGCCTTTCGGGGCCT
TCTACGCCGCATGTGCGATGTCCCCCGCCCATCCCGGCCTCCCGGCGTCC
GCTGTCGCTGGCTTGGTCCCCTCTCCCAGCCCCTCCCCACGAGGGCTCTA
CCTCAATCCGATATCCCTCCAGGCACCCGGAGGAGGAGCAGGGCAGGAAT
GGGAGGGAGGGAGAGAGGGAGAGAAAACTGACGACAGTGACGCTTTCTTT
GCGTCCCCTTCTCCCCGATGAACGCGAGGAGGGGAGGACTGGCTGTAGCC
CAGGCGGAGGATGACGGATAGTAAGACAGAAGCCGCACTCCCAGGGAGGT
TGCGGAGGAAAAGGAGGAGGGGAAGGGACTTGCTGACGCCGGCCCTCGTC
CACTCGCTCGATGGCCCCCCTTTCGCTTCGAATTGTACGAAATTGAATGG
GCGAAGGACCGGCGATGATAGTGTCGCGAGGGAGAAGAGGTTTCAGGGGG
CCAGGTGCTTGCGTCGAAAGGGTCTGAAGCAGAGTGGATGGATGGACGGT
TTAGACAGGTTCCTGGCAGCACAGATGTGACGATCGATAGTCAGAGAGAG
AGAAAAGAAGGACGAAGAAATGAGAAGATAGCACGCCATATTTCACATTT
AAAATAGCGCGGACGAGGCGCCCAGGAAGCCTCGGGAAAAGCAGCCGGCA
TGACAACGGCCTTCCCCTTAAATATTTACCGAGAGAGGGGGAAGCGGGAT
TGATATGAGGACACCTGACAGTGAAAATGAAAGTGATTGCGCAAACGCAA
AAATTGCAAGCAGTACAGCACAGGTACGAAAGAACATAAGTAGGGAAAGC
ACATGACTGAGGGGGTAAATCCGGGTATTGAAAGGCCAACCTGAGTGTTA
AGAAGGGACGCATATGCCAAGACCAAGTGGGACGCATGTGAAGTTAGAGG
TTTGGGAAGAGGATGGGAGGAGCACGGTGGAGTAGGAGATGATATCTTGG
GTTGGAAGGGGCGGTGAGGCGCACGCCAGCCGGGCTCCTTTTGGTTAGTG
TGATTCAGCCCTCGATGCATAGGCGGTCCCGAGGGAGGGAGGGACGGGGG
CCTCCGGCATGACAGTGGGCCATCGGGTATTCAAAGAAATGTCATCACGC
TTGGTTT
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protein sequence of rna7240

>rna7240-protein ID=rna7240-protein|Name=rna7240|organism=Nannochloropsis gaditana|type=polypeptide|length=206bp
MRRLSFSSTGRITLLPSFYVAALLLNVLMLTIEGWHVPTVRSSSLLTNKI
RSHGSIFPFCSTSSTSPVCCRPPRPTLTRLHANFPEDEQEEEEWPGSLRR
SGQEGGNGGGGGEGPNGPRGQDVQPDVVMVDMTEDGEPPRVTVKASYNVN
DDLGPVISTLWRGIVLLDREGTSRRSAQMTILSVGCVGEERPGRERGREG
GREGRQ
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mRNA from alignment at CM002471.1:98012..99282+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7240 ID=rna7240|Name=rna7240|organism=Nannochloropsis gaditana|type=mRNA|length=1271bp|location=Sequence derived from alignment at CM002471.1:98012..99282+ (Nannochloropsis gaditana)
CACAAAGCAAGCACGTGCCTGCGGCCTGATTTTCTCTTGCCTGCTCCTTT
TTGTTCTTTTAAACATGTCAGCACTATTGAACCACCACAATATAATCTCA
GACATTCATAGAAACTTATTTGTTTGACCACCATATCAGACCACACGCAA
TAGGGACATACATCGAAACGAGCGCGCTGTCGAGGAACATGCGTCGTCTC
TCGTTTAGCAGCACTGGCCGCATCACcctcttgccttccttctaTGTCGC
GGCCCTTTTGCTCAATGTACTTATGCTCACGATTGAAGGGTGGCATGTAC
CTACGGTGCGAAGCTCAAGCCTGCTAACCAATAAAATAAGAAGCCACGGC
AGCATTTTTCCCTTTTGTtccacatcctccacctcccctgtGTGTtgtcg
ccccccccggccgaCTCTCACTCGCCTGCATGCGAATTTCCcggaggacg
agcaggaagaggaggagtggcCTGGCTCCCTGCGTCGCTcgggtcaagaa
ggagggaacgggggaggaggaggggaaggaccgaACGGACCGAGGGGGCA
AGACGTGCAGCCGGACGTGGTGATGGTAGATATGACGGAGGTAAGCggtg
ggatggggagggaagggtatGAAAGAGCTGCAAATCGAAAGAAAGATTTT
GGACAAGGGCGCGATTGCAGGGATGGCCGCCCCCACCTTACACCctggcc
ccttcctcttctttccctccgtccctccctccctccgtccatccctccct
ccctccctccctccctccctccctccttccttttaGGACGGCGAGCCCCC
CCGAGTGACGGTGAAAGCTTCGTACAATGTGAATGATGATTTAGGACCCG
TCATCTCCACGCTGTGGAGAGGGATTGTCCTGCTGGACCGGGAAGGCACT
TCGCGGCGAAGCGCCCAGATGaccatcctctccgtcgggtgcgtggggga
ggagaggccagggagggagagagggagggagggagggagggagggaagac
agtGATTTTCTGTCTGCAGCCTGCCATCTTCCCGTGGCCATCCAGTGCGC
tgagggaggttgggaggtTGTTGAGGTTGCGAGGGAAGAGCTGAAAAAAG
GACACGGCCcctgtgccctccctcgccctccttccctccctccttcaaga
cctccccccctcctcctcctccttcctcttccccttggcccctttcctcc
tctccctcacctacttcccttccgcgcttcttcctcccctcccttccacc
tcgcACTCTCTAATCCTTCCC
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Coding sequence (CDS) from alignment at CM002471.1:98012..99282+

>rna7240 ID=rna7240|Name=rna7240|organism=Nannochloropsis gaditana|type=CDS|length=1242bp|location=Sequence derived from alignment at CM002471.1:98012..99282+ (Nannochloropsis gaditana)
ATGCGTCGTCTCTCGTTTAGCAGCACTGGCCGCATCACcctcttgccttc
cttctaTGTCGCGGCCCTTTTGCTCAATGTACTTATGCTCACGATTGAAG
GGTGGCATGTACCTACGGTGCGAAGCTCAAGCCTGCTAACCAATAAAATA
AGAAGCCACGGCAGCATTTTTCCCTTTTGTtccacatcctccacctcccc
tgtGTGTtgtcgccccccccggccgaCTCTCACTCGCCTGCATGCGAATT
TCCcggaggacgagcaggaagaggaggagtggcCTGGCTCCCTGCGTCGC
TcgggtcaagaaggagggaacgggggaggaggaggggaaggaccgaACGG
ACCGAGGGGGCAAGACGTGCAGCCGGACGTGGTGATGGTAGATATGACGG
AGGACGGCGAGCCCCCCCGAGTGACGGTGAAAGCTTCGTACAATGTGAAT
GATGATTTAGGACCCGTCATCTCCACGCTGTGGAGAGGGATTGTCCTGCT
GGACCGGGAAGGCACTTCGCGGCGAAGCGCCCAGATGaccatcctctccg
tcgggtgcgtgggggaggagaggccagggagggagagagggagggaggga
gggagggagggaagacagtGAATGCGTCGTCTCTCGTTTAGCAGCACTGG
CCGCATCACcctcttgccttccttctaTGTCGCGGCCCTTTTGCTCAATG
TACTTATGCTCACGATTGAAGGGTGGCATGTACCTACGGTGCGAAGCTCA
AGCCTGCTAACCAATAAAATAAGAAGCCACGGCAGCATTTTTCCCTTTTG
TtccacatcctccacctcccctgtGTGTtgtcgccccccccggccgaCTC
TCACTCGCCTGCATGCGAATTTCCcggaggacgagcaggaagaggaggag
tggcCTGGCTCCCTGCGTCGCTcgggtcaagaaggagggaacgggggagg
aggaggggaaggaccgaACGGACCGAGGGGGCAAGACGTGCAGCCGGACG
TGGTGATGGTAGATATGACGGAGGACGGCGAGCCCCCCCGAGTGACGGTG
AAAGCTTCGTACAATGTGAATGATGATTTAGGACCCGTCATCTCCACGCT
GTGGAGAGGGATTGTCCTGCTGGACCGGGAAGGCACTTCGCGGCGAAGCG
CCCAGATGaccatcctctccgtcgggtgcgtgggggaggagaggccaggg
agggagagagggagggagggagggagggagggaagacagtGA
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Synonyms
Publications