rna724, rna724 (mRNA) Nannochloropsis gaditana

Overview
Namerna724
Unique Namerna724
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1327
Alignment locationCM002456.1:265515..267957 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100247g5.2332.mrna
Orig protein idgnl|cribi|Naga_100247g5.2332
GbkeymRNA
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:265515..267957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100247g5gene694Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna724rna724-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29949.1cds724Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna724 ID=rna724|Name=rna724|organism=Nannochloropsis gaditana|type=mRNA|length=1327bp
ATTTTTGCTGGAAGTACCCCTGGGGCCATATTTGGTGACAGTATTGCGCG
TGCACAGTCGGTTCTTCTTCAAGTAGCGAGAGAGAAGAAAAATATTTTAT
GACTCGAAATACCACCGGAAAGAATAGAACATACAACTTTGATCCACATT
CTCATTTTCATCCGACTCGTGGACACAGAATCCTTCGCGCTTAACCCTCT
CACGACCATGCGTTCTTTTGCGTCCTTTGGAACCGTGGCCACTTTGCTCG
TGGTGTCTGTTGCCGGCATCGCGGCCAACATCAACACCTGTACTAGCAAT
TCTCTCTTGAACATCCGTGGAGGCGGTTTCTTTGAGAAACTCGACTCCAA
AATCTCGTCGTGGACGAAGAGTGGCGATGAGGCCATTGATAGAGCCTCCA
AGGCGGTAGACTCTGCTTCCGACAGGACGAAAAACAAGATTGACGAGACT
GATGCCAGGCTAAAGAAAGCGCAGACGGATGCGGAGACAAAAGCCAAAAA
GTACGCAGCAGACGCCAAGTCCGCCGCCGACCGCACCCGGGCCAAGGTAG
AGGAACAGAAGAAGAGGGCGCACGCCGCGGCCGAAAGGGCCGAGAAGGAG
GCAAACCGGCTCGCGGATCAGGCGAAACATGCCAAGTCGGAATGGAAGGC
TTCTGCCAAGAAGGCAGAGTCGGCCTTGGACGACGGGATCGATCATGCCC
GGGGCATCTTTGGAGGCATCAAAGATTTTTTCAAATAAACGGATGAGTAA
CACGACGGGCTGGGGTCACGGTGACTATGCAACGAAAGAGGAGGAGTTGG
TCTGGCACCTTGGAGGGAGGAAAGGGAGCGTTTCGTGCCTTGCATCTCTG
GGGTTGGGTGGGATACTTGAACTCGGATGCCTGATGCGATATGGGGGAAT
GATGCCTCTTGCAAGAGTGGTAAAAATTGACGTTTAAATAATCTAAGGGT
ATATTACAGCCTAATGTATGGCCTGAATACAGATCGGAAGAAGGGGAGAA
AAGGATCGGGAGGGACAAGAAGGATCATAAGAACCAAGCACTTTCCACGC
GTCGTATCACCACATTGTCCAACTGGATATGAGAGAAGGGGCAACGAGGG
TTTGAGAAGATTGGCAGTATGAAAGGGGAGAAGATTGTAGGGAGCGTAGC
CACATGGGCTATTCGGGCTTCGCAACCCCCAAAACAAACCACGACACTTA
CGTTCAAATCATGAAAAAGGGGGATGCGGGATAAAGCTTGTGAAGAATGG
AGGAAACCCGTCGCTAAGGGGATCGAAGGGAAATGGAAGAAGTAACGCAA
GCAAACTCGGAGCCATCTGCTTTTTGC
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protein sequence of rna724

>rna724-protein ID=rna724-protein|Name=rna724|organism=Nannochloropsis gaditana|type=polypeptide|length=155bp
MRSFASFGTVATLLVVSVAGIAANINTCTSNSLLNIRGGGFFEKLDSKIS
SWTKSGDEAIDRASKAVDSASDRTKNKIDETDARLKKAQTDAETKAKKYA
ADAKVKAEKTKAEAKVGALPEVPYFALILLLKTRFVGLVRPRLDDCMAST
KVSCV
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mRNA from alignment at CM002456.1:265515..267957+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna724 ID=rna724|Name=rna724|organism=Nannochloropsis gaditana|type=mRNA|length=2443bp|location=Sequence derived from alignment at CM002456.1:265515..267957+ (Nannochloropsis gaditana)
TTGCTGGAAGTACCCCTGGGGCCATATTTGGTGACAGTATTGCGCGTGCA
CAGTCGGTTCTTCTTCAAGTagcgagagagaagaaaaatatTTTATGACT
CGAAATACCACCGGAAAGAATAGAACATACAACTTTGATCCACATTCTCA
TTTTCATCCGACTCGTGGACACAGAATCCTTCGCGCTTAACCCTCTCACG
ACCATGCGTTCTTTTGCGTCCTTTGGAACCGTGGCCACTTTGCTCGTGGT
GTCTGTTGCCGGCATCGCGGCCAACATCAACACCTGTACTAGCAATTCTC
TCTTGAACATCCGTGGAGGCGGTTTCTTTGAGAAACTCGACTCCAAAATC
TCGTCGTGGACGAAGAGTGGCGATGAGGTAAGATATGTGGTCTCGAGCGA
AAGAATAAGGTCCATCGTGCGATGCCATCGACGTCGAACCTGATGGCAAA
TTGAAGATCTGCCCTCTTGCTGAttctcccacccttccgcGACTGCTTTC
TTTAGGCCATTGATAGAGCCTCCAAGGCGGTAGACTCTGCTTCCGACAGG
ACGAAAAACAAGATTGACGAGACTGATGCCAGGCTAAAGAAAGCGCAGAC
GGATGCGGAGGTAAtgatgggggaagaggggtgaCGTTGAAGTCCGTCGA
AGGGGGACGGATGCGTCCAAACGACCGAGCCAACGAAAAATGTGGACCCT
GATGCCAAACAATCAGTAGAGACAAGACGATGGTGACAAATATCCTGGGC
AAGACTTTAATGATTGCAGTAGATCACAGGCTTTGTGCCATATAGCGCTG
GCGAAGATTCGTCACTCTCGTTGCTCACgttcactcccttcctttccccc
tccgacTCGATACCCATCAGACAAAAGCCAAAAAGTACGCAGCAGACGCC
AAGGTCAAGGcagagaagacgaaggccgAGGCCAAGGTAGGAGCGCTGCC
TGAAGTCCCCTATTTCGCCCTTATCCTGCTCTTGAAGACGCGGTTTGTCG
GACTTGTCAGGCCTCGTCTTGATGATTGCATGGCATCGACCAAAGTATCC
TGCGTGTAATTTTTCATGGATCGATTGTTGAAGTTGGACCTTGCCCCATC
ATAGATTCTGCTCGTGTTTGCCTGTGGTCCAGTCTTTgctttcttggcct
tggaAGACCGCGCGTCCCActtttcttttgctttctttctctctcgaTCC
CTTACTGATGTTTGTAGGCCAAAGCACAACAAATGGCGGATGAGGCCAAG
GCAAGTGCAGAGAAGATGAAGGCCGACGCCAAGGTTAGAATCGTGATCCC
GCGTGCGTGCACAGGGCATGACAAGGATACGTACATGTGCACCGGCATGT
TTTGATAACAGGGCTGGCAGGCGATCTGAGATGTGGGAATACAGCGTGAG
AGTTACGCATGGCCGTGCATTGTGcggtgcccctcccttcagggaggtgg
gaaatCGACGTGACACAGGCTCCCCTACCCCTCCGCCGTTCCCTGTCCCG
GCCTCGTTCTGCGCGAGCCAGCCTGCTGCTTTCTGGTTTCTTCCAATACA
TAACGTAGCAAGACCATGCACCGTATTTAAtttcctcgttcccttcctct
ttcctttatcctccttctttctcttttccccccagTCCGCCGCCGACCGC
ACCCGGGCCAAGGTAGAGGaacagaagaagagggcgcACGCCGCGGCCGA
AagggccgagaaggaggcaaaCCGGCTCGCGGATCAGGCGAAACATGCCA
AGTCGGAATGGAAGGCTTCTGCCAAGAAGGCAGAGTCGGCCTTGGACGAC
GGGATCGATCATGCCCGGGGCATCTTTGGAGGCATCAAAGATTTTTTCAA
ATAAACGGATGAGTAACACGACGGGCTGGGGTCACGGTGACTATGCaacg
aaagaggaggagttggtCTGGCaccttggagggaggaaagggagcgttTC
GTGCCTTGCATCTCTGGGGTTGGGTGGGATACTTGAACTCGGATGCCTGA
TGCGATATGGGGGAATGATGCCTCTTGCAAGAGTGGTAAAAATTGACGTT
TAAATAATCTAAGGGTATATTACAGCCTAATGTATGGCCTGAATACAGat
cggaagaaggggagaaaaggatcgggagggacaagaaggatCATAAGAAC
CAAGCACTTTCCACGCGTCGTATCACCACATTGTCCAACTGGATATGAGA
GAAGGGGCAACGAGGGTTTGAGAAGATTGGCAGTatgaaaggggagaaga
ttGTAGGGAGCGTAGCCACATGGGCTATTCGGGCTTCGCAACCCCCAAAA
CAAACCACGACACTTACGTTCAAATCATGAAAAAGGGGGATGCGGGATAA
AGCTTGTGAAGAATGGAGGAAACCCGTCGCTAAGGGGATCgaagggaaat
ggaagaagtAACGCAAGCAAACTCGGAGCCATCTGCTTTTTGC
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Coding sequence (CDS) from alignment at CM002456.1:265515..267957+

>rna724 ID=rna724|Name=rna724|organism=Nannochloropsis gaditana|type=CDS|length=1404bp|location=Sequence derived from alignment at CM002456.1:265515..267957+ (Nannochloropsis gaditana)
ATGCGTTCTTTTGCGTCCTTTGGAACCGTGGCCACTTTGCTCGTGGTGTC
TGTTGCCGGCATCGCGGCCAACATCAACACCTGTACTAGCAATTCTCTCT
TGAACATCCGTGGAGGCGGTTTCTTTGAGAAACTCGACTCCAAAATCTCG
TCGTGGACGAAGAGTGGCGATGAGGCCATTGATAGAGCCTCCAAGGCGGT
AGACTCTGCTTCCGACAGGACGAAAAACAAGATTGACGAGACTGATGCCA
GGCTAAAGAAAGCGCAGACGGATGCGGAGACAAAAGCCAAAAAGTACGCA
GCAGACGCCAAGGTCAAGGcagagaagacgaaggccgAGGCCAAGGTAGG
AGCGCTGCCTGAAGTCCCCTATTTCGCCCTTATCCTGCTCTTGAAGACGC
GGTTTGTCGGACTTGTCAGGCCTCGTCTTGATGATTGCATGGCATCGACC
AAAGTATCCTGCGTGTAAATGCGTTCTTTTGCGTCCTTTGGAACCGTGGC
CACTTTGCTCGTGGTGTCTGTTGCCGGCATCGCGGCCAACATCAACACCT
GTACTAGCAATTCTCTCTTGAACATCCGTGGAGGCGGTTTCTTTGAGAAA
CTCGACTCCAAAATCTCGTCGTGGACGAAGAGTGGCGATGAGGCCATTGA
TAGAGCCTCCAAGGCGGTAGACTCTGCTTCCGACAGGACGAAAAACAAGA
TTGACGAGACTGATGCCAGGCTAAAGAAAGCGCAGACGGATGCGGAGACA
AAAGCCAAAAAGTACGCAGCAGACGCCAAGGTCAAGGcagagaagacgaa
ggccgAGGCCAAGGTAGGAGCGCTGCCTGAAGTCCCCTATTTCGCCCTTA
TCCTGCTCTTGAAGACGCGGTTTGTCGGACTTGTCAGGCCTCGTCTTGAT
GATTGCATGGCATCGACCAAAGTATCCTGCGTGTAAATGCGTTCTTTTGC
GTCCTTTGGAACCGTGGCCACTTTGCTCGTGGTGTCTGTTGCCGGCATCG
CGGCCAACATCAACACCTGTACTAGCAATTCTCTCTTGAACATCCGTGGA
GGCGGTTTCTTTGAGAAACTCGACTCCAAAATCTCGTCGTGGACGAAGAG
TGGCGATGAGGCCATTGATAGAGCCTCCAAGGCGGTAGACTCTGCTTCCG
ACAGGACGAAAAACAAGATTGACGAGACTGATGCCAGGCTAAAGAAAGCG
CAGACGGATGCGGAGACAAAAGCCAAAAAGTACGCAGCAGACGCCAAGGT
CAAGGcagagaagacgaaggccgAGGCCAAGGTAGGAGCGCTGCCTGAAG
TCCCCTATTTCGCCCTTATCCTGCTCTTGAAGACGCGGTTTGTCGGACTT
GTCAGGCCTCGTCTTGATGATTGCATGGCATCGACCAAAGTATCCTGCGT
GTAA
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Synonyms
Publications