rna7228, rna7228 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7228
Unique Name	rna7228
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1086
Alignment location	CM002471.1:63703..64727 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101329g1.5021.mrna
Orig protein id	gnl\|cribi\|Naga_101329g1.5021
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:63703..64727 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101329g1	gene6991	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23462.1	cds7211	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7228	rna7228-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:63703..64727-
coding sequence from alignment at CM002471.1:63703..64727-

mRNA sequence

>rna7228 ID=rna7228|Name=rna7228|organism=Nannochloropsis gaditana|type=mRNA|length=1086bp
CCGGCGAGATCGAAGCATGCCTTCGGCCAGGGAACATAGATTTGTAGCAA
TGTGACCAAATTCATTGCATTTCTTTGCAGAGATAAGACCATTTCAAGTC
ATGGCCATCCGAGTTATAATATTGTGTCATACAATCGGTCGCGGGGTGAG
ATCACGCCTTGAGCGACAATATTTCGCACGAATGTTCGACAGGCTGCTTA
GTCGAAGTCCTGCCAGGCGTTCTGTTTGTTTCCTTGTTCGAAGCCCTAAC
CTTACATTCGCGAATTTCGATCCCAATACTCTCCTGAAGTTATCATTCCT
GCGCTACTCTCTTATGTCATTTCGTATTTCTTTTGTTTGCGTGGCCCTCT
TTCTCAGAGTTTGCCCTCAAGCTTACCGACGACGAAAGTGTTTTGGTGCG
TATGCCGGATTGAAAAGGAATTTATTTCAGTTTACTATTTCATGGCTTAT
CTCCTCTTACGTTGCTCGCTTCTATATTCTCCCTCTTATTTATCAGGACC
TTTCCCCTTCCCCTCACAAAAACCATCGGAGGCCGCCACCCTTTCCGTCC
CTCCATTTCTCCTCAGCCCTTCTTACTTGCCGCCTCCCTGCAAGGAAAGG
AACAAGGCATGATCGCTCAACGCCAACTTCGCCCATTGCCTCTCCGCCCA
CCATTCCTCAGGAAAACGTTGCCCGCGCATCTCCATCTCCCGGATCACGT
TCCGCTCGATGTTCCGTGCCTTGTCCTTCACGTCCAACGGGCTTCGCGAC
GTCAGCACCGGCTTGGGACTGCGGTCATCGTACCCCTTCACCTTGACCCA
GATCAATGAGCGATGCTGCCCGAAGAGGGCCAGGCCTTGGAGCAGCCTCC
TTAACTCCATATCCGTCCAATTCAACGGCCGTCGCCGTTTCTTGCCCCGC
TCCGTCATCACAGGCACCAGCTCCCGTTTCCCCCCTCCTCCCTCGCCCCT
GAACAAGGCTCGCCCCGTCATCCCTGCGCCCGCCACTTTCCTGCAGTCCG
AGGCCAGATTCTGCGCAATTTCCTCCGCCACCGTCACCACGCCCGCGAAG
GGTCCGGGCCCCCGGCCCTTCTTCCCTTCCTCCCCC

protein sequence of rna7228

>rna7228-protein ID=rna7228-protein|Name=rna7228|organism=Nannochloropsis gaditana|type=polypeptide|length=181bp
GQEGKVVERGVTKTPPSPRPHGLPPSLPIFSATSLPGPTLLSLLSGLVLH
RACPSLRLLELDDNPAGPQDVYQAILLLHQAVAPGPLLRVSLKGMGFGPS
TVLFPPPSCPPPSVHTIPWTSPSLRGTGLAVAPVADCVGTDAAGRGQGRK
REEGKEGKEALDTYTRFLARMPSALVVVEVV

mRNA from alignment at CM002471.1:63703..64727-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7228 ID=rna7228|Name=rna7228|organism=Nannochloropsis gaditana|type=mRNA|length=1025bp|location=Sequence derived from alignment at CM002471.1:63703..64727- (Nannochloropsis gaditana)
GGGCAAGAAGGAAAGGTGGTGGAAAGAGGAGTGACCAAGACCCCTCCCTC
CCCCCGTCCTCACGGCCTCCCTCCCTCCCTGCCCATCTTTAGTGCCACCT
CCCTTCCGGGCCCCACCCTCCTCTCCCTCCTCTCCGGCCTCGTCCTCCAC
CGGGCGTGCCCCTCCCTCCGCCTCCTCGAGCTCGACGACAACCCCGCCGG
TCCACAAGACGTCTACCAAGCCATCCTCCTCCTCCACCAGGCCGTCGCCC
CCGGCCCTCTCCTCCGGGTCTCCTTGAAAGGGATGGGCTTTGGTCCCAGC
ACCGTCCTCTTCCCTCCTCCGTCCTGCCCCCCTCCCTCGGTCCACACCAT
CCCGTGGACGTCTCCCTCTCTGAGGGGAACAGGTCTGGCGGTGGCACCTG
TCGCAGACTGCGTTGGGACCGATGCGGCGGGAAGAGGACAGGGAAGGAAG
AGAGAGGAAGGAAAGGAAGGAAAAGAGGCGCTGGACACGTACACGCGTTT
TCTGGCCCGAATGCCGTCCGCGCTTGTGGTGGTGGAGGTGGTGTAAGGGA
GTGCCCCTTCCATTGCGTGCATTGTGGAGGAGGTTGGTCCACATGTGCAC
GGTATTTCGTGTGGCCACATGCCGGGAAGAAGGTGACCTGACACCGTTTA
TGTATACATGTTTGATTGTTAGGATCACGGAATTACTCGGACAATTTGAC
GTGAAACCCTAGGTACCTGACGTTGGAAGACGTTTGTCTACGAAAACCAG
AAAAGCATTATGGCAGCATTCCTACGTTTGGGGAATGAGTACGCTCTTCT
CCGTCTTTCCCGAACACTTGTGAGTGGTGGTCAGTGAGTTCTTTTGCGTT
GATTTAATCGTACTGCTAGTAGTTTGTGCTCTGGTATGTTCCCATTTTCA
CTTTTCATTTCTGCTCGTGGTCTAAGAGTTAGAGATATTTTTACGCAGTA
GGACATTTTCTTGAAAGATTCATCGCCACAGATTTATGTGTATACATATC
TGATCCAATGAAGCAATTAATTTGC

Coding sequence (CDS) from alignment at CM002471.1:63703..64727-

>rna7228 ID=rna7228|Name=rna7228|organism=Nannochloropsis gaditana|type=CDS|length=546bp|location=Sequence derived from alignment at CM002471.1:63703..64727- (Nannochloropsis gaditana)
GGGCAAGAAGGAAAGGTGGTGGAAAGAGGAGTGACCAAGACCCCTCCCTC
CCCCCGTCCTCACGGCCTCCCTCCCTCCCTGCCCATCTTTAGTGCCACCT
CCCTTCCGGGCCCCACCCTCCTCTCCCTCCTCTCCGGCCTCGTCCTCCAC
CGGGCGTGCCCCTCCCTCCGCCTCCTCGAGCTCGACGACAACCCCGCCGG
TCCACAAGACGTCTACCAAGCCATCCTCCTCCTCCACCAGGCCGTCGCCC
CCGGCCCTCTCCTCCGGGTCTCCTTGAAAGGGATGGGCTTTGGTCCCAGC
ACCGTCCTCTTCCCTCCTCCGTCCTGCCCCCCTCCCTCGGTCCACACCAT
CCCGTGGACGTCTCCCTCTCTGAGGGGAACAGGTCTGGCGGTGGCACCTG
TCGCAGACTGCGTTGGGACCGATGCGGCGGGAAGAGGACAGGGAAGGAAG
AGAGAGGAAGGAAAGGAAGGAAAAGAGGCGCTGGACACGTACACGCGTTT
TCTGGCCCGAATGCCGTCCGCGCTTGTGGTGGTGGAGGTGGTGTAA

Synonyms

Publications