rna7227, rna7227 (mRNA) Nannochloropsis gaditana

Overview
Namerna7227
Unique Namerna7227
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length503
Alignment locationCM002471.1:60296..61381 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101315g1.4735.mrna
Orig protein idgnl|cribi|Naga_101315g1.4735
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:60296..61381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101315g1gene6990Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7227rna7227-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23464.1cds7210Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7227 ID=rna7227|Name=rna7227|organism=Nannochloropsis gaditana|type=mRNA|length=503bp
TATTTCTTAACAGATCAATTGTTTGATTCAAGACATACATCGAAATATTC
ATGGATCAAACCGTTTCTTTGGGCGGCTCTGCACCGGAGGAAAGACCTGC
AACGGAGGCGAAAGGCTTCGACTGGGCAGAAAAAAGGGAAGAAGCCTCGA
GGACCGTCAAAGAAACGGCCGCTTATCTCCAGGAACATGGTCAAAAAACT
GTCACGTACCTAAAGACGCACGGGGCTGCTGCGGCCGGCGCCGCGGCAGC
CACGAGCCAACGCACCCGGGAGGAGGTGGTGCGCGAATGGATCAAAAGCA
CGGGGCTGGGGTCGATCGTGTACCGGAGCCTGGTCCCCGGGCATTGGCGG
ATGCCGGCCATCTCTCTCGGGGTGACTTTGGCCTTGCTGGCAGCGGCCAT
CGCCATCGTTGTCGCTACGGGGGGGGGCGCTCTCCTGATCTTGATGCTCC
TCGTTTTGACCCTATTCAACCAAATGGTCCACGCGTACTGTGATGGTGGG
GAG
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protein sequence of rna7227

>rna7227-protein ID=rna7227-protein|Name=rna7227|organism=Nannochloropsis gaditana|type=polypeptide|length=231bp
MAIRVIILCHTIGRGVRSRLERQYFARMFDRLLSRSPARRSVCFLVRSPN
LTFANFDPNTLLKLSFLRYSLMSFRISFVCVALFLRVCPQAYRRRKCFGA
YAGLKRNLFQFTISWLISSYVARFYILPLIYQDLSPSPHKNHRRPPPFPS
LHFSSALLTCRLPARKGTRHDRSTPTSPIASPPTIPQENVARASPSPGSR
SARCSVPCPSRPTGFATSAPAWDCGHRTPSP
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mRNA from alignment at CM002471.1:60296..61381+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7227 ID=rna7227|Name=rna7227|organism=Nannochloropsis gaditana|type=mRNA|length=1086bp|location=Sequence derived from alignment at CM002471.1:60296..61381+ (Nannochloropsis gaditana)
CCGGCGAGATCGAAGCATGCCTTCGGCCAGGGAACATAGATTTGTAGCAA
TGTGACCAAATTCATTGCATTTCTTTGCAGAGATAAGACCATTTCAAGTC
ATGGCCATCCGAGTTATAATATTGTGTCATACAATCGGTCGCGGGGTGAG
ATCACGCCTTGAGCGACAATATTTCGCACGAATGTTCGACAGGCTGCTTA
GTCGAAGTCCTGCCAGGCGTTCTGTTTGTTTCCTTGTTCGAAGCCCTAAC
CTTACATTCGCGAATTTCGATCCCAATACTCTCCTGAAGTTATCATTCCT
GCGCTACTCTCTTATGTCATTTCGTATTTCTTTTGTTTGCGTGGCCCTCT
TTCTCAGAGTTTGCCCTCAAGCTTACCGACGACGAAAGTGTTTTGGTGCG
TATGCCGGATTGAAAAGGAATTTATTTCAGTTTACTATTTCATGGCTTAT
CTCCTCTTACGTTGCTCGCTTCTATATTCTCCCTCTTATTTATCAGgacc
tttccccttcccctcacaaAAACCATCGGAGGCCGCCaccctttccgtcc
ctccatttctcctcaGCCCTTCTTACTTGCCGCCTCCCtgcaaggaaagg
aacaagGCATGATCGCTCAACGCCAACTTCGCCCATTGCCTCTCCGCCCA
CCATTCCTCAGGAAAACGTTGCCCGCGCATCTCCATCTCCCGGATCACGT
TCCGCTCGATGTTCCGTGCCTTGTCCTTCACGTCCAACGGGCTTCGCGAC
GTCAGCACCGGCTTGGGACTGCGGTCATCGTACCCCTTCACCTTGACCCA
GATCAATGAGCGATGCTGCCCGAAGAGGGCCAGGCCTTGGAGCAGCCTCC
TTAACTCCATATCCGTCCAATTCAACGGCCGTCGCCGTTTCTTGCCCCGC
TCCGTCATCACAGGCACCAGCTcccgtttcccccctcctccctcgcccct
gaACAAGGCTCGCCCCGTCATCCCTGCGCCCGCCACTTTCCTGCAGTCCG
AGGCCAGATTCTGCGCAatttcctccgccaccgtcacCACGCCCGCGAAG
GGTCCGGGCCCCcggcccttcttcccttcctccccc
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Coding sequence (CDS) from alignment at CM002471.1:60296..61381+

>rna7227 ID=rna7227|Name=rna7227|organism=Nannochloropsis gaditana|type=CDS|length=696bp|location=Sequence derived from alignment at CM002471.1:60296..61381+ (Nannochloropsis gaditana)
ATGGCCATCCGAGTTATAATATTGTGTCATACAATCGGTCGCGGGGTGAG
ATCACGCCTTGAGCGACAATATTTCGCACGAATGTTCGACAGGCTGCTTA
GTCGAAGTCCTGCCAGGCGTTCTGTTTGTTTCCTTGTTCGAAGCCCTAAC
CTTACATTCGCGAATTTCGATCCCAATACTCTCCTGAAGTTATCATTCCT
GCGCTACTCTCTTATGTCATTTCGTATTTCTTTTGTTTGCGTGGCCCTCT
TTCTCAGAGTTTGCCCTCAAGCTTACCGACGACGAAAGTGTTTTGGTGCG
TATGCCGGATTGAAAAGGAATTTATTTCAGTTTACTATTTCATGGCTTAT
CTCCTCTTACGTTGCTCGCTTCTATATTCTCCCTCTTATTTATCAGgacc
tttccccttcccctcacaaAAACCATCGGAGGCCGCCaccctttccgtcc
ctccatttctcctcaGCCCTTCTTACTTGCCGCCTCCCtgcaaggaaagg
aacaagGCATGATCGCTCAACGCCAACTTCGCCCATTGCCTCTCCGCCCA
CCATTCCTCAGGAAAACGTTGCCCGCGCATCTCCATCTCCCGGATCACGT
TCCGCTCGATGTTCCGTGCCTTGTCCTTCACGTCCAACGGGCTTCGCGAC
GTCAGCACCGGCTTGGGACTGCGGTCATCGTACCCCTTCACCTTGA
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Synonyms
Publications