rna7224, rna7224 (mRNA) Nannochloropsis gaditana

Overview
Namerna7224
Unique Namerna7224
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length824
Alignment locationCM002471.1:55203..57094 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101209g3.6887.mrna
Orig protein idgnl|cribi|Naga_101209g3.6887
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:55203..57094 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101209g3gene6987Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7224rna7224-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23465.1cds7207Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7224 ID=rna7224|Name=rna7224|organism=Nannochloropsis gaditana|type=mRNA|length=824bp
TACATACCCGGAGTCAAGAAAAAACGACTCTCGCCTGCCCGCCCTGTCGA
ACTAATGACGGCTAATTTAGAATTGAAGCCGTACAGTGGAATATTTGCTT
GCTTGATAGCTTCAAAATGTGTGCCATGCGTTTGTCACGGGCTCTAAGCT
GCACGTAATACGCGTTCCCGCTCTCGTCGTCGCTTTCGCGTTTCTCGCCC
ATATCGACAGCACGTCAACTTGCCTTGCTCCTGGAGGCTGAACAAGAATG
GAGCCGCAAGAACCACTTCCAACGTCCTATGGTCAGGGCTACGCGCACAG
TGGGCAGCATACACAATACCCCTCTCCGGCCTTCCCTGCTTTCCCCACCG
CCGCAAGCACGAGTCGCCCGTACCCCTCAACAACCTTCTCATCGATGCCG
GTTATACCCGAGGTGGAGCGTGAGAGTGAGGAGGATGCCGCAGGACGAGG
AAGAGGAGGCATATACTCTGGGATGGCGGGCGACGATGGAAGGCGGAAAC
CACAAATGTATCAAGACGGCTTTTTGGCGTCCAGTACCTCTCACACGATC
AATAAACACGAGGTCAGCATAGCCCAGCAGCAGCGGAGCCTCGCCGAGGA
GACGGCCATCCGGCGCAGGGAGATGGAGGAAGAAATCCAGGCGTTACACA
AGCGCATTTACGCCATCGACGAGAAGATCCAACGCACCGCGCGCGAACGA
GCATCGACAGCCTCACGTCTTCAACAGAAGATCGGATCGAGGGTGGAAGG
GTTGCAGAAGGAGTGGGAGGGGAAGGTGGAGGAGAACTTCGACTGGATTT
TGAAGGAGGTGACGGAGAGAGAGA
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protein sequence of rna7224

>rna7224-protein ID=rna7224-protein|Name=rna7224|organism=Nannochloropsis gaditana|type=polypeptide|length=149bp
MLGATRLHAEAVDPSGDGAGVPVPFSWRPAWMAVRPYSARPKLFLLSRGK
ECLVGRRRMESREWRARKGSPVAGGASPPVAEDVRGRKERGAREEKPGLQ
RPSCVGFKGGRTMWKGKEGERGEKGGKGGGRAGGREGKKSFPLRLPGLP
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mRNA from alignment at CM002471.1:55203..57094+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7224 ID=rna7224|Name=rna7224|organism=Nannochloropsis gaditana|type=mRNA|length=1892bp|location=Sequence derived from alignment at CM002471.1:55203..57094+ (Nannochloropsis gaditana)
TCAGCGACAAGGACAGGACTGGACCGCTTCCTCTCGCGCCGTCTTCtacc
gcgtcctccacctcttccgcgGGCACCctgacctcctccaggggTTCTCC
TACTTTCTCCCCGCCTGCTTGCAGGTACCCCACCCcgctcctcgctctcc
tcgcaGACCCTGCACCCCGTGCAGGGGGGTGGGCACCTCTTTGGGCTCAC
ACTTCCATCTCTTtgtccctttctcctcttcctctgtagGCAGAAGCCCA
GGAGCACGTGGTCGCTGCCGGTGTGCCTCGGCCGGTCGAGAGCCGACGAG
GCGATTTCCCGCGGGAACGATTGGCGATGGacgcgtgagggaggaaaaga
aggaggagggtggggggaagaacggggataggaaggaaaaggatttgggg
gggggcataCATTCTGTGACCTGAAGGCATATTGAGTACGCTGGCTTATG
ATGTGAGTATATAGtatcgtggtggaggaaggatgtGGACGGACGTGTCC
GGATCCCACGTCGGTTGAGGGGTAAGGTACGTGGGGAGGCTCGCACCCTA
CCCGGAGTTGCCTTTGCCTACGGTCTCTTGTCTGCCTTTGGTGGTTGGAA
ACCGGGAGATTCCCCGAGGACGGGGGGTCAGGGACCGAAAAagagcgacg
gagggaggcacaAGTCCGGCTCCAAGAGCCATGGGCATGGGGGTGGTGAG
ATGCGGATCCcggtggcaggaggggcggaaaggagagggcttgAGGTTCA
TTTGGAATCCGTCGCCGACTGAGGGCGGTGCCCACAGGCGGAGAGAGAAG
CGTGTGTGGAGTCGAACGGGCCCCAGGCAATGACGGCCGGGACAGTATGA
ATTCATgtgtgggaaagggaaaagagatagagagcgagagagagaaacAG
CGAGCAGGAAAGGGCGAGAAAGGCcgagagaggacggagacaaggggagg
CGTGCGGCTGGAAAGTTTTGCATAGCAGGAAACAGTGGGgcgagaaaaga
ggaaagggaagagtaGCGGTTTTGGAGTAACGGTTTTGGGTGGGCATCAA
GGGGAATGAAAAGGCGGAgagcggctggagggagcGCAGCATAAGCCGTA
TACAGTTGtgcatggagaaggaaaagattTCTGAGCGGggtgagagaagg
agcgCGTCATGTCCACACCGGAGGGGATGGCAATTGGCAGGGAAGCAAAG
GACAAGCGAGGGCGTCGGCAGACGACAAGGAGGTCACGAGCCGATCATTC
AAGGAGGCAGCTTTAACCGCTTGCTGGCGTCCGgaattttccctcctcgt
ccatgctTGGGGCCACACGCCTCCACGCAGAGGCCGTCGATCCCTCTGGT
GATGGGGCAGGCGTGCCAGTTCCTTTCTCTTGGCGACCTGCGTGGATGGC
GGTCCGTCCATACAGCGCGAGGCCaaagctttttctcctcagccgaggga
aggaatgcttggtagggaggaggaggatggagagcagggaatggagggcg
aggaaggggagtcCGGTCGCAGgaggcgcttccccccctgtgGCCGAGGa
cgtgagagggaggaaggaaaggggcgcgagggaggagaagcccgGGCTGC
AGCGCCCCTCTTGTGTCGGCttcaagggggggaggacgatgtggaaaggg
aaagaaggggaaagaggggaaaagggaggaaagggaggagggagggcggg
agggcgggaggggaagaaatctttccctctccgACTCCCGGGACTCCCAT
AGTtacaaggaagaaaaaatgtgCCACACTACAGCCAGCAGGCTGCACGG
AAGGAACGCGGGCATGTAACGAGAGAGAAGACACCGAGGCATCGTGCCCT
ACCCAAAAGATATTTTAAAACCGGATATTTACGGCCCTGATC
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Coding sequence (CDS) from alignment at CM002471.1:55203..57094+

>rna7224 ID=rna7224|Name=rna7224|organism=Nannochloropsis gaditana|type=CDS|length=450bp|location=Sequence derived from alignment at CM002471.1:55203..57094+ (Nannochloropsis gaditana)
atgctTGGGGCCACACGCCTCCACGCAGAGGCCGTCGATCCCTCTGGTGA
TGGGGCAGGCGTGCCAGTTCCTTTCTCTTGGCGACCTGCGTGGATGGCGG
TCCGTCCATACAGCGCGAGGCCaaagctttttctcctcagccgagggaag
gaatgcttggtagggaggaggaggatggagagcagggaatggagggcgag
gaaggggagtcCGGTCGCAGgaggcgcttccccccctgtgGCCGAGGacg
tgagagggaggaaggaaaggggcgcgagggaggagaagcccgGGCTGCAG
CGCCCCTCTTGTGTCGGCttcaagggggggaggacgatgtggaaagggaa
agaaggggaaagaggggaaaagggaggaaagggaggagggagggcgggag
ggcgggaggggaagaaatctttccctctccgACTCCCGGGACTCCCATAG
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Synonyms
Publications