rna7222, rna7222 (mRNA) Nannochloropsis gaditana

Overview
Namerna7222
Unique Namerna7222
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length411
Alignment locationCM002471.1:48624..49628 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100651g2.739.mrna
Orig protein idgnl|cribi|Naga_100651g2.739
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:48624..49628 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100651g2gene6985Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7222rna7222-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23469.1cds7205Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7222 ID=rna7222|Name=rna7222|organism=Nannochloropsis gaditana|type=mRNA|length=411bp
ATGGCATGTTCTCCGCCACAGCATGCCGACGTCAAAGCCGCCTCCACCAC
AAAATCCTCGTCTTCCTATCCTTCTCAGTCGACTGCTTCTTGCCCTCCCT
CATCCCGTCGCTCGTCCTTACCCACCATGACCCAGCTCCTTGCTGGCTTG
GACATGTTTCTTCACCTGTGCGCTCCCCCCGGGAAGTACAGGATCATAAG
AATACTGGGATTCTATTACATAACGGCCCGTATTTTTACTACGTTCATCG
TTGCACTGCTGTTTGCACAGCCACGCCTTGCGTCAATTGCACGCTTATTT
TTTCTATCTCTCTATCACAGTTCAGTGCAATTGGACAGCTTGTGCCCTCC
CTCAAGCCTAGATTGGCGGCAGCTTTGCTGGGAGGAGGCTGCGTTCCCAA
AGATAGCATGA
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protein sequence of rna7222

>rna7222-protein ID=rna7222-protein|Name=rna7222|organism=Nannochloropsis gaditana|type=polypeptide|length=300bp
MYAECFLLKCSLTRFLQARSFLSARAFLIVVGVSHLSWTVKKMWPTIKSR
VLLQCLTGFTAVLSPWQRNWRQFLVFLRHGCFPYTVKALISPARHTLQNY
GAQQYFCRPSHVVLYLPRRRPGGSARWSAWKGEGNPERPRQKKSFDFRII
WSTHPPIMELDKPSGMYPAPKSRPPVSSLSALSLSSCAPDSYVSPCSSVS
TVLPASPMSILSTESTTTSRGLDFIPEAPVLVRQNAYVGGRARYAAGERR
KVARRCRQTEFGDAFVQLTQDDKNEWCHVGDITSEKEEDNKEEGSRASDL
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mRNA from alignment at CM002471.1:48624..49628+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7222 ID=rna7222|Name=rna7222|organism=Nannochloropsis gaditana|type=mRNA|length=1005bp|location=Sequence derived from alignment at CM002471.1:48624..49628+ (Nannochloropsis gaditana)
ATGTATGCTGAATGTTTTCTACTGAAATGTTCACTCACTCGTACATGATG
TGTGTATTGGTCGTGGTGTCAAGATCTTGTCGAGATTGTTTTGTGTACGG
TCGGGAGCGTCGAATTGCCCCGGCATAAATAAGCAGCATAAGGTTTTCTT
CAGGCGCGTTCTTTTCTGTCAGCCAGGGCTTTTCTTATTGTTGTGGGTGT
CAGTCACTTATCCTGGACCGTGAAAAAGATGTGGCCCACCATTAAAAGTC
GTGTCCTGCTTCAATGCCTAACTGGCTTCACCGCCGTTTTGTCACCTTGG
CAGAGAAATTGGCGGCAATTTCTTGTGTTTCTCAGACACGGATGCTTCCC
ATATACTGTGAAAGCTTTAATAAGCCCCGCGCGGCACACCTTACAAAACT
ACGGTGCTCAGCAATATTTCTGTCGTCCTTCACACGTCGTACTTTATCTT
CCTAGGCGCCGGCCGGGGGGGTCGGCACGTTGGTCTGcgtggaaaggaga
gggcaacCCAGAGCGACCACGCCAAAAAAAAAGCTTCGATTTCCGAATCA
TTTGGAGCACACACCCGCCGATAATGGAGCTTGATAAACCCTCTGGCATG
TACCCTGCGCCCAAGAGCCGTcctcccgtctcctccctgtccgctctctc
tctctcgtctTGCGCCCCTGACTCCTACGTatccccctgctcctcggTTT
CCACCGTCCTGCCTGCTTCGCCCATGTCCATTCTTTCCACCGAGTCGACC
ACCACGAGCAGGGGACTGGATTTCATCCCGGAAGCGCCTGTGCTGGTACG
ACAGAATGCctacgtgggagggagggcgcgataTGCAgctggggagagga
ggaaagtggcgAGACGGTGCCGTCAGACTGAATTCGGGGACGCCTTTGTC
CAACTGACCCAGGACGATAAGAACGAGTGGTGCCATGTAGGAGACATTAC
gagcgagaaagaggaggacaacaAAGAGGAGGGCTCCAGGGCGAGCGATC
TTTAA
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Coding sequence (CDS) from alignment at CM002471.1:48624..49628+

>rna7222 ID=rna7222|Name=rna7222|organism=Nannochloropsis gaditana|type=CDS|length=1806bp|location=Sequence derived from alignment at CM002471.1:48624..49628+ (Nannochloropsis gaditana)
ATGTATGCTGAATGTTTTCTACTGAAATGTTCACTCACTCGTTTTCTTCA
GGCGCGTTCTTTTCTGTCAGCCAGGGCTTTTCTTATTGTTGTGGGTGTCA
GTCACTTATCCTGGACCGTGAAAAAGATGTGGCCCACCATTAAAAGTCGT
GTCCTGCTTCAATGCCTAACTGGCTTCACCGCCGTTTTGTCACCTTGGCA
GAGAAATTGGCGGCAATTTCTTGTGTTTCTCAGACACGGATGCTTCCCAT
ATACTGTGAAAGCTTTAATAAGCCCCGCGCGGCACACCTTACAAAACTAC
GGTGCTCAGCAATATTTCTGTCGTCCTTCACACGTCGTACTTTATCTTCC
TAGGCGCCGGCCGGGGGGGTCGGCACGTTGGTCTGcgtggaaaggagagg
gcaacCCAGAGCGACCACGCCAAAAAAAAAGCTTCGATTTCCGAATCATT
TGGAGCACACACCCGCCGATAATGGAGCTTGATAAACCCTCTGGCATGTA
CCCTGCGCCCAAGAGCCGTcctcccgtctcctccctgtccgctctctctc
tctcgtctTGCGCCCCTGACTCCTACGTatccccctgctcctcggTTTCC
ACCGTCCTGCCTGCTTCGCCCATGTCCATTCTTTCCACCGAGTCGACCAC
CACGAGCAGGGGACTGGATTTCATCCCGGAAGCGCCTGTGCTGGTACGAC
AGAATGCctacgtgggagggagggcgcgataTGCAgctggggagaggagg
aaagtggcgAGACGGTGCCGTCAGACTGAATTCGGGGACGCCTTTGTCCA
ACTGACCCAGGACGATAAGAACGAGTGGTGCCATGTAGGAGACATTACga
gcgagaaagaggaggacaacaAAGAGGAGGGCTCCAGGGCGAGCGATCTT
TAAATGTATGCTGAATGTTTTCTACTGAAATGTTCACTCACTCGTTTTCT
TCAGGCGCGTTCTTTTCTGTCAGCCAGGGCTTTTCTTATTGTTGTGGGTG
TCAGTCACTTATCCTGGACCGTGAAAAAGATGTGGCCCACCATTAAAAGT
CGTGTCCTGCTTCAATGCCTAACTGGCTTCACCGCCGTTTTGTCACCTTG
GCAGAGAAATTGGCGGCAATTTCTTGTGTTTCTCAGACACGGATGCTTCC
CATATACTGTGAAAGCTTTAATAAGCCCCGCGCGGCACACCTTACAAAAC
TACGGTGCTCAGCAATATTTCTGTCGTCCTTCACACGTCGTACTTTATCT
TCCTAGGCGCCGGCCGGGGGGGTCGGCACGTTGGTCTGcgtggaaaggag
agggcaacCCAGAGCGACCACGCCAAAAAAAAAGCTTCGATTTCCGAATC
ATTTGGAGCACACACCCGCCGATAATGGAGCTTGATAAACCCTCTGGCAT
GTACCCTGCGCCCAAGAGCCGTcctcccgtctcctccctgtccgctctct
ctctctcgtctTGCGCCCCTGACTCCTACGTatccccctgctcctcggTT
TCCACCGTCCTGCCTGCTTCGCCCATGTCCATTCTTTCCACCGAGTCGAC
CACCACGAGCAGGGGACTGGATTTCATCCCGGAAGCGCCTGTGCTGGTAC
GACAGAATGCctacgtgggagggagggcgcgataTGCAgctggggagagg
aggaaagtggcgAGACGGTGCCGTCAGACTGAATTCGGGGACGCCTTTGT
CCAACTGACCCAGGACGATAAGAACGAGTGGTGCCATGTAGGAGACATTA
CgagcgagaaagaggaggacaacaAAGAGGAGGGCTCCAGGGCGAGCGAT
CTTTAA
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Synonyms
Publications