rna722, rna722 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna722
Unique Name	rna722
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1233
Alignment location	CM002456.1:263801..265650 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100247g4.2331.mrna
Orig protein id	gnl\|cribi\|Naga_100247g4.2331
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:263801..265650 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100247g4	gene693	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna722	rna722-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29948.1	cds722	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:263801..265650-
coding sequence from alignment at CM002456.1:263801..265650-

mRNA sequence

>rna722 ID=rna722|Name=rna722|organism=Nannochloropsis gaditana|type=mRNA|length=1233bp
ATGGTCTGCATAAGAGCGTCTACCGTTCCAATAAAAGCAGCACGGCATTT
TGTGCTACTGGCCACCACCGCCACACTTTCGTTGGCAGCATGCGTTCTTA
ATCATCGTCCATATCGTTCATATCCAGCATTTGTATCGCGCAGCGCCCCT
CCTCGCGGCTTACTAGGCTCTATCAAGCATGAGCAAAACATCCCCGACCC
ATTCACCACCCGATGCCAACATTTCGTGCAATTTCCAGGGCATATCGAGG
GCAAAGATAGTCACAAAGACGTCCACATTAGACATAAGTTTGCTTGCAGG
TCGCATGCCGGGTCAGGCGCGAACCAGGAGAATGTAAATACGGGGGGGAC
AGACTTAGGCGGCCTCCCCCAGGCCCCAATTGTCGTCGACGCGAAGACCA
AAGAAGCCTGGCCTGACCTGCGACCTGCACAATGGAAGCAGATTGAGGCT
TTGGCCAACCTATTGGTTGAGATCAATACCAAAATCAATGTCATTTCACG
CAAGGATATTCAGAATGTCCTCCCAAACCACATCTTGCCCGCCCTGGGCC
TAGCAACCCTCCTTCGCAAAGCTCCCGCAGGGACCAGCGTCCTCGACATC
GGTACGGGCGGGGGCTTTCCCGGCCTCCCCCTTGCTATTGCCTGCCCCCA
ACTCAACCTCCTCCTCGTCGACGCCACCGGGAAAAAAATCCGGGCCGTTG
CCGCCATGTCCGCGCGTTTGAATTTGAAAAACGTGGCGACCCTGCACGCC
CGGATCGAGGAGGTACAGGGACAACGGTTCGATTACGTGGTGGGGAGGTC
CGTCACCGCCATTCCCCGTTTCTTAAGGTGGGCTCAGCCCAAGCTTAAGG
TGCCAAGGCAAGGCGGGAGGGGGAGGGAAAAGACGGGCGAAAGCGAGGAG
AAGGGGCCATTGGAGGATGAATTTGGAGTACCAGTTCCAGGCGTGCTTTA
TGTGACGGGTTTGGAGCCGACGCCGTCGACGAAAATGGCGAGGGGAGGAG
GGGAGGGAGGAAGGGAAGGGGGGGAGGGGGAGGAAGACGGGGAGGAGGAG
GAGGAGGAGGAACTGGCAGAATGTGTGCCCGACCACGTGTATCCGGTGCA
AGCATTGCTGGGGCCTGTGTACGAAGGGGACAAGCACGTCTTCCATTTCT
CCGCGGCAGCCTTGGTCAAGGGCCGGGTTTTCGTCCCCGAGTGGGAGGGA
GGGCGGGGGGGAAGGCGGGAGGGGAACGGGTAG

protein sequence of rna722

>rna722-protein ID=rna722-protein|Name=rna722|organism=Nannochloropsis gaditana|type=polypeptide|length=429bp
MSKIRRTQRDGRRQLTRLATSIVLIVSACPAVITDATRATLSFSILPRLF
ARRAGSSNGLHPLSSPSSATPTTTSLPATEINAPFPPPSEFPTSELGFSF
SPAGLLFPYHLGVASVLREKRLITDQVPLGGSSAGALVAVLIGSDISMKK
ALDACHTINNQWSGAMSFTGVITENLFNFDFGGGAADSHEEAVAAALAAG
VTLPPSLPPSYSTRLTNINGRRTLKALLEEVLDQVLPPDAHERLNARPGK
VTVGVTNLGWSGFRANFFLRPRAISSFASRADLIEVLLASCNVPVLFAGY
PSLPCRGLPSIDGYFSVPAHRFGCPYLAGAARTILVSPFPATAVMRGPGP
TAEEEGGREWLSPEVEEGWGEGGRKGMRELLRDAWSVNGREVVERYYELG
RRDAQAWVDKSEYMRRKLKGGGGLMIPFL

mRNA from alignment at CM002456.1:263801..265650-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna722 ID=rna722|Name=rna722|organism=Nannochloropsis gaditana|type=mRNA|length=1850bp|location=Sequence derived from alignment at CM002456.1:263801..265650- (Nannochloropsis gaditana)
AAAGTTGTATGTTCTATTCTTTCCGGTGGTATTTCGAGTCATAAAATATT
TTTCTTCTCTCTCGCTACTTGAAGAAGAACCGACTGTGCACGCGCAATAC
TGTCACCAAATATGGCCCCAGGGGTACTTCCAGCAAAAATGTTCTCAAAG
AATTGCCCCCATAAATCCATACACCATAAAATAATCACACAGTTTCTTGA
AGCAGCTGGGAGGGGGGCCTGGAGCCATGTCAAAAATAAGACGGACACAA
CGAGATGGTCGCCGGCAGTTGACACGTTTGGCTACCTCTATCGTTCTCAT
CGTTTCTGCCTGCCCTGCCGTCATCACGGACGCGACCCGGGCCACCCTGT
CGTTTTCCATCCTTCCTCGCCTCTTTGCACGACGTGCAGGCAGCAGCAAT
GGATTGCATCCTCTCTCTTCCCCTTCCTCCGCGACCCCCACCACCACTAG
CCTGCCTGCAACTGAAATCAATGCTCCTTTCCCCCCCCCTTCGGAATTTC
CAACCTCTGAGCTAGGCTTTTCCTTCAGTCCTGCAGGCTTACTTTTCCCC
TATCACCTGGGTGTCGCGTCTGTGCTTCGGGAAAAGCGTTTGATTACCGA
TCAAGTCCCCCTGGGAGGCTCGAGTGCCGGTGCCCTTGTGGCGGTTTTGA
TTGGCTCAGATATTTCGATGAAAAAAGCTCTCGATGCGTGCCACACCATC
AACAACCAATGGAGCGGGGCCATGTCTTTCACCGGAGTCATAACAGAAAA
TTTGTTCAACTTCGATTTTGGTGGGGGAGCAGCCGACTCGCATGAAGAGG
CAGTGGCGGCGGCCTTGGCAGCAGGGGTGACGCTCCCTCCCTCCCTCCCT
CCTTCCTACTCGACAAGGTTGACGAACATCAACGGTCGTCGCACCCTCAA
AGCCTTATTGGAGGAGGTACTGGACCAGGTCCTTCCCCCAGACGCCCACG
AGCGTTTGAACGCGCGGCCGGGGAAGGTAGGACGGGAGGGAGTCCAAGGG
CCTTCTCCTCCTTCACATCCTTCTTCCCTAACCACACCTGCGGCGATCCT
TCACATCTTTCTTCCCTAACCATCGCCCGCAATGATCCTCCTCTTTTTAT
CTTTCCCCCGCTCCCCGCCAGGTGACGGTCGGTGTCACGAACTTGGGCTG
GTCAGGTTTTCGCGCCAATTTTTTCCTTCGGCCCCGGGCAATTTCCTCCT
TTGCCTCCCGCGCCGACCTGATCGAAGTCCTCCTTGCCTCCTGCAACGTC
CCCGTCCTCTTTGCCGGGTATCCTTCGCTGCCCTGCCGGGGCCTCCCGTC
CATCGACGGCTACTTTAGCGTGCCTGCCCACCGGTTCGGCTGCCCTTACC
TTGCGGGCGCTGCCCGTACCATTTTGGTCTCACCCTTCCCGGCGACAGCT
GTCATGCGGGGCCCGGGGCCCACGGCGGAGGAGGAGGGTGGAAGGGAGTG
GTTGAGTCCGGAGGTGGAGGAGGGATGGGGGGAGGGAGGGAGGAAGGGGA
TGCGGGAGCTGTTGCGCGACGCGTGGTCGGTGAATGGGAGGGAGGTGGTG
GAGCGGTATTACGAGTTAGGAAGGAGGGATGCACAGGCATGGGTGGATAA
GAGCGAGTACATGAGGCGGAAGCTTAAAGGAGGGGGGGGCTTGATGATCC
CTTTCTTGTGATGAGAGGGGGAAGGAAGGAGAGAGGGAGGGAGAGAGGGG
AGGAATGGCAGCGATGGTGCGATGGCCAAAACTGTGACAACTGCGGTAAA
TCATTGTAACATCATCGAAGGCTCGACTGTATCCAATCAATACTGTACGC
GTGGTAAAATCAAAACGCAAAGACCAACAATTAAAGGAGGCCTCGTGGGA

Coding sequence (CDS) from alignment at CM002456.1:263801..265650-

>rna722 ID=rna722|Name=rna722|organism=Nannochloropsis gaditana|type=CDS|length=2580bp|location=Sequence derived from alignment at CM002456.1:263801..265650- (Nannochloropsis gaditana)
GTGACGGTCGGTGTCACGAACTTGGGCTGGTCAGGTTTTCGCGCCAATTT
TTTCCTTCGGCCCCGGGCAATTTCCTCCTTTGCCTCCCGCGCCGACCTGA
TCGAAGTCCTCCTTGCCTCCTGCAACGTCCCCGTCCTCTTTGCCGGGTAT
CCTTCGCTGCCCTGCCGGGGCCTCCCGTCCATCGACGGCTACTTTAGCGT
GCCTGCCCACCGGTTCGGCTGCCCTTACCTTGCGGGCGCTGCCCGTACCA
TTTTGGTCTCACCCTTCCCGGCGACAGCTGTCATGCGGGGCCCGGGGCCC
ACGGCGGAGGAGGAGGGTGGAAGGGAGTGGTTGAGTCCGGAGGTGGAGGA
GGGATGGGGGGAGGGAGGGAGGAAGGGGATGCGGGAGCTGTTGCGCGACG
CGTGGTCGGTGAATGGGAGGGAGGTGGTGGAGCGGTATTACGAGTTAGGA
AGGAGGGATGCACAGGCATGGGTGGATAAGAGCGAGTACATGAGGCGGAA
GCTTAAAGGAGGGGGGGGCTTGATGATCCCTTTCTTGTGAATGTCAAAAA
TAAGACGGACACAACGAGATGGTCGCCGGCAGTTGACACGTTTGGCTACC
TCTATCGTTCTCATCGTTTCTGCCTGCCCTGCCGTCATCACGGACGCGAC
CCGGGCCACCCTGTCGTTTTCCATCCTTCCTCGCCTCTTTGCACGACGTG
CAGGCAGCAGCAATGGATTGCATCCTCTCTCTTCCCCTTCCTCCGCGACC
CCCACCACCACTAGCCTGCCTGCAACTGAAATCAATGCTCCTTTCCCCCC
CCCTTCGGAATTTCCAACCTCTGAGCTAGGCTTTTCCTTCAGTCCTGCAG
GCTTACTTTTCCCCTATCACCTGGGTGTCGCGTCTGTGCTTCGGGAAAAG
CGTTTGATTACCGATCAAGTCCCCCTGGGAGGCTCGAGTGCCGGTGCCCT
TGTGGCGGTTTTGATTGGCTCAGATATTTCGATGAAAAAAGCTCTCGATG
CGTGCCACACCATCAACAACCAATGGAGCGGGGCCATGTCTTTCACCGGA
GTCATAACAGAAAATTTGTTCAACTTCGATTTTGGTGGGGGAGCAGCCGA
CTCGCATGAAGAGGCAGTGGCGGCGGCCTTGGCAGCAGGGGTGACGCTCC
CTCCCTCCCTCCCTCCTTCCTACTCGACAAGGTTGACGAACATCAACGGT
CGTCGCACCCTCAAAGCCTTATTGGAGGAGGTACTGGACCAGGTCCTTCC
CCCAGACGCCCACGAGCGTTTGAACGCGCGGCCGGGGAAGGTGACGGTCG
GTGTCACGAACTTGGGCTGGTCAGGTTTTCGCGCCAATTTTTTCCTTCGG
CCCCGGGCAATTTCCTCCTTTGCCTCCCGCGCCGACCTGATCGAAGTCCT
CCTTGCCTCCTGCAACGTCCCCGTCCTCTTTGCCGGGTATCCTTCGCTGC
CCTGCCGGGGCCTCCCGTCCATCGACGGCTACTTTAGCGTGCCTGCCCAC
CGGTTCGGCTGCCCTTACCTTGCGGGCGCTGCCCGTACCATTTTGGTCTC
ACCCTTCCCGGCGACAGCTGTCATGCGGGGCCCGGGGCCCACGGCGGAGG
AGGAGGGTGGAAGGGAGTGGTTGAGTCCGGAGGTGGAGGAGGGATGGGGG
GAGGGAGGGAGGAAGGGGATGCGGGAGCTGTTGCGCGACGCGTGGTCGGT
GAATGGGAGGGAGGTGGTGGAGCGGTATTACGAGTTAGGAAGGAGGGATG
CACAGGCATGGGTGGATAAGAGCGAGTACATGAGGCGGAAGCTTAAAGGA
GGGGGGGGCTTGATGATCCCTTTCTTGTGAATGTCAAAAATAAGACGGAC
ACAACGAGATGGTCGCCGGCAGTTGACACGTTTGGCTACCTCTATCGTTC
TCATCGTTTCTGCCTGCCCTGCCGTCATCACGGACGCGACCCGGGCCACC
CTGTCGTTTTCCATCCTTCCTCGCCTCTTTGCACGACGTGCAGGCAGCAG
CAATGGATTGCATCCTCTCTCTTCCCCTTCCTCCGCGACCCCCACCACCA
CTAGCCTGCCTGCAACTGAAATCAATGCTCCTTTCCCCCCCCCTTCGGAA
TTTCCAACCTCTGAGCTAGGCTTTTCCTTCAGTCCTGCAGGCTTACTTTT
CCCCTATCACCTGGGTGTCGCGTCTGTGCTTCGGGAAAAGCGTTTGATTA
CCGATCAAGTCCCCCTGGGAGGCTCGAGTGCCGGTGCCCTTGTGGCGGTT
TTGATTGGCTCAGATATTTCGATGAAAAAAGCTCTCGATGCGTGCCACAC
CATCAACAACCAATGGAGCGGGGCCATGTCTTTCACCGGAGTCATAACAG
AAAATTTGTTCAACTTCGATTTTGGTGGGGGAGCAGCCGACTCGCATGAA
GAGGCAGTGGCGGCGGCCTTGGCAGCAGGGGTGACGCTCCCTCCCTCCCT
CCCTCCTTCCTACTCGACAAGGTTGACGAACATCAACGGTCGTCGCACCC
TCAAAGCCTTATTGGAGGAGGTACTGGACCAGGTCCTTCCCCCAGACGCC
CACGAGCGTTTGAACGCGCGGCCGGGGAAG

Synonyms

Publications