rna7214, rna7214 (mRNA) Nannochloropsis gaditana

Overview
Namerna7214
Unique Namerna7214
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1382
Alignment locationCM002471.1:25824..26404 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101028g1.94.mrna
Orig protein idgnl|cribi|Naga_101028g1.94
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:25824..26404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101028g1gene6976Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7214rna7214-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23476.1cds7197Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7214 ID=rna7214|Name=rna7214|organism=Nannochloropsis gaditana|type=mRNA|length=1382bp
GTCGGACGGCGGAGACGACATAGCAGACTTTTACCCAAAGAGACTCGGGA
AGGACCCTCTCGTGAACACGTTGGCAATTGTAAGGAAACTTGTGCATGTA
CTTGGTCGTGATACGATGATAGATTCCTTTTTGACAGCAATGCACGCATT
TCTTATATAGATGGCGCAGGGCTGCCTGGTTGTGGAGGAGAAAGGGAAAA
GAAGAAATCTACCCCGGAAGGCGTATTTCCCCGCAAAAAGCTTCTGGCAT
TCCAGAATACCCATCATAATACATCTTATCTTCTTCCTGCTCTTCGTCGT
CGCGTGCTCTTCAGCGGATCCTCCCATCCAATGTGCTGCACAAAGCTCCG
AAGCAGCCTTGCCTCCTTCGGAAGATGCTGCGTGCGTCTGCGTGGACAAT
TGGACAGGACCGGAATGTCGTGTAAGCCAAATCATTCGGCAGAGGATGAG
CGGGTATATTTTCTTTGCATTTCGCTACGATAGGGAATGACGGTAGTCCC
TGATCCTTTGTTACAGAGACCACACGTCTGCTTCCTAGCATCTACATGCA
GGGTGCCTTATACGCGCGCTCTTTTCCTCGCCTCATCGCCCCACGTCTTC
CAGGTGTGCACAGATGACTCCGTGTGCGGTTCTGGGCAGCTGTGTCGACA
TGCACTGCCGATGTACCAGCGGCTCGAAGGGGTCTGCAACATCTTCACCA
AGGGTTTCGCGGATTTTTTGGGGGGAGCTGGAACCCTGGCGTTGCAAATG
GGCATGACCGACAGCGAAGGAGGTATATGGGCAGGGTGGAAGGTTCAGGA
AGGGGACGAGAAAAGGGAGAGGCAGCGTAGGGTCTGAGGGTCGTTGAGGG
GGTGGAGCGCTCTCGGAGACGGTCTGGGTGCCGTCCGGGCATTGCGACGA
CGCTCACGCTTCTGGGGAATTTTTCTCCACTTCTTGGAATTTTCCTCCCC
CCTCTCCTGCCTCCCTCAGCGACGCCTGCTCCGGATGCTGGCTTGCTCGA
CCTGACAGTCTTCGCGAACCCCTCCCCGGGTATCTTTCGACCAGTCTTCT
CGTGCGCGGGCCGCCAGTGCCTGCTCAGCAAGGAGAAGGACTCGCCAGGG
GCAGCGGGCGGGGCCCGTGTGGGCATGCAGTGCCAGCAGAGCTCCTGCAC
CGCCCTCTGCGACAAGGCTGAGGACGCGTTTTGCATCGATCTGATGCTCC
AGCTCTTGGCGAGCATCGGGGAGACCGGCACCCTGGACCTGATCTGCGAG
GCCGACGGCGACTCCTGCGTGATGCACGAGGCGGTGCTCGACGCCTACTT
CAAGGGCATTGTCTTCGACGAGTGCCGGTTGGGGGAGTGCGCGCCTAGGA
ACGCGGGGAACATGACGCTGCAAGAGCTGAGG
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protein sequence of rna7214

>rna7214-protein ID=rna7214-protein|Name=rna7214|organism=Nannochloropsis gaditana|type=polypeptide|length=154bp
MNETLALHSTGLSASTLSTRPRRPESDRPVRVLRGGSRSSLPGARPVREG
GAVGAQKGGGVGDGEGEGEKQGGGERVEGTSPRRTLVNIEREILKGVLPV
SPCGAGEEMHAHLGKEEGVKLARTTRGHGIQGQGEVEGGLRASLAFLART
RVKV
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mRNA from alignment at CM002471.1:25824..26404+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7214 ID=rna7214|Name=rna7214|organism=Nannochloropsis gaditana|type=mRNA|length=581bp|location=Sequence derived from alignment at CM002471.1:25824..26404+ (Nannochloropsis gaditana)
ATGAATGAGACCTTGGCTTTGCATTCCACGGGCCTTTCAGCCTCGACGTC
GCCTGATTTCTTGCGAGACAGAAGCATTTATCGCTCCAGCCATGCCCCCA
GCTATAACATCCTTCACCCTCTGAtaacccctccctccctccctccctcc
ctccctccctcaggcttTCGACCCGACCGCGTCGACCTGAATCTGACCGT
CCTGTTCGGGTACTTAGGGGCGGCTCTCGTAGTAGCCTACCTGGTGCTCG
CCCGgtgcgtgaaggaggagcggtAGGGGCccaaaaaggggggggagtgg
gggatggggagggcgagggagagaagcagggagggggagagcgcgtGGAG
GGAACGTCGCCAAGAAGGACGCTCGTCAACATTGAAAGGGAAATATTGAA
AGGGGTGCTGCCAGTCAGTCCATGTGGTGCCGGCGAGGAGATGCACGCAC
AtcttggaaaggaagagggcgtcAAATTGGCGCGAACGACACGTGGACAC
GGGATTCAAGGGCAGGGTGAAGTCGAGGGGGGGCTCAGAGCATCCCTCGC
TTTTCTGGCCCGGACGCGAGTAAAAGTGTAA
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Coding sequence (CDS) from alignment at CM002471.1:25824..26404+

>rna7214 ID=rna7214|Name=rna7214|organism=Nannochloropsis gaditana|type=CDS|length=930bp|location=Sequence derived from alignment at CM002471.1:25824..26404+ (Nannochloropsis gaditana)
ATGAATGAGACCTTGGCTTTGCATTCCACGGGCCTTTCAGCCTCGACgct
tTCGACCCGACCGCGTCGACCTGAATCTGACCGTCCTGTTCGGGTACTTA
GGGGCGGCTCTCGTAGTAGCCTACCTGGTGCTCGCCCGgtgcgtgaagga
ggagcggtAGGGGCccaaaaaggggggggagtgggggatggggagggcga
gggagagaagcagggagggggagagcgcgtGGAGGGAACGTCGCCAAGAA
GGACGCTCGTCAACATTGAAAGGGAAATATTGAAAGGGGTGCTGCCAGTC
AGTCCATGTGGTGCCGGCGAGGAGATGCACGCACAtcttggaaaggaaga
gggcgtcAAATTGGCGCGAACGACACGTGGACACGGGATTCAAGGGCAGG
GTGAAGTCGAGGGGGGGCTCAGAGCATCCCTCGCTTTTCTGGCCCGGACG
CGAGTAAAAGTGTAAATGAATGAGACCTTGGCTTTGCATTCCACGGGCCT
TTCAGCCTCGACgcttTCGACCCGACCGCGTCGACCTGAATCTGACCGTC
CTGTTCGGGTACTTAGGGGCGGCTCTCGTAGTAGCCTACCTGGTGCTCGC
CCGgtgcgtgaaggaggagcggtAGGGGCccaaaaaggggggggagtggg
ggatggggagggcgagggagagaagcagggagggggagagcgcgtGGAGG
GAACGTCGCCAAGAAGGACGCTCGTCAACATTGAAAGGGAAATATTGAAA
GGGGTGCTGCCAGTCAGTCCATGTGGTGCCGGCGAGGAGATGCACGCACA
tcttggaaaggaagagggcgtcAAATTGGCGCGAACGACACGTGGACACG
GGATTCAAGGGCAGGGTGAAGTCGAGGGGGGGCTCAGAGCATCCCTCGCT
TTTCTGGCCCGGACGCGAGTAAAAGTGTAA
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Synonyms
Publications