rna7207, rna7207 (mRNA) Nannochloropsis gaditana

Overview
Namerna7207
Unique Namerna7207
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1590
Alignment locationCM002471.1:2816..3288 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100889g2.1685.mrna
Orig protein idgnl|cribi|Naga_100889g2.1685
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:2816..3288 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100889g2gene6970Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7207rna7207-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23484.1cds7190Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7207 ID=rna7207|Name=rna7207|organism=Nannochloropsis gaditana|type=mRNA|length=1590bp
TTCTACCCTTACTTATTGCAGATAGCAGCATCACCCAGAATTCATGTATA
GCTCGAGCTCATGTTTCCGCATTTTTTAACCATTCGATCCGTCGGAAGCT
TCCAAGCGAAATCCACAGGTGCCCTTTCAAGCACAGATTCAGCGTAACAG
AGTATGAAAATTTCCTCAAGCGCATTCCTTGTCGCCCTCCTGGGCTTCAC
AAGCATTTTGGCCACCGTCTCTCAAGAATGTCCGCGGCTTTTTCTCAAGG
CCAAAGTCAGGCCGAATGCGAAGCGCGGGATCCTGGCAGGGAAGGGCCAG
GCCAAGATTACCGTCACGCTAAAGAGCAAAGACCCCGTCGACAATCTGGA
GTTTCAACTGAACCTGCCAAATGGCTTATCGGTAGAGCGGACAGCAATGC
GCCCGTCCTCAAAGCCCTATGCGCCGCCGCAAATTGTTGAGGATACGGAT
GGAACGACTGCTATTTACTGGCTCGGCGTCGCCTTCACCAAAAGCAAGGG
AGGAAAGCGCCGCTTTCGCGTCAAGGTGAAGGCCGACGAGTGTGCCCCTG
ACACTTTGGCGGTGGACGCTTTCGCTTACCTAGTGAATGCTACAGATGCC
TCTTGCATCACGCCGCTGGCCAGCCCCGCCATCGTAAAAGTGCGATACTC
GAAACTCAAAAATGCCGCGACTTGCGCGCCGACGCCAGCTCCTACCATCA
ATCCTACGCAGCCTTTTGTGCTTCTCGGCGAGGGCCAGCGATTCTCTCAA
GGAGGGCGCCTGGCCCCCTTCCAGGACCGTCGTCTCTCGGCGCATCCGGG
ATCCAGCAAGCATGGAGGCATCATGAGTTTCGGCCGAGCTGGAGACCGAC
ACCTGCAGTCAATCGATACACCGGAGGCTTGCTATGAATACTGCTCACTG
AACTCGGGCGAGGTAGTACCGTTCCTCTTCAGCTGGAATACCGTGACCAG
CCAGTGCTTCTGCTGCGTCGGAGTGTGCACACCCCTGGTCTTCGATCCTG
ACTTCAACGTGTACGAAGCGCTCTTGCCTAAGACGTCTTCCCCGACTTCC
TTCCCTACTGCGATGCCCACCAAGTTGCCGACTGGCACGCCTACTGCCTC
GCCGACTGGGAAGCCCACTGCCTCGCCTACTGGAATGCCCACTGCCACAC
TCACTGCTGCGCCCACCGTGTCACCCACTGCGATCCCCACTGCCACACCC
ACTGCGATGCCCACTGTCACACCCACTGCGATGCCCACTGCCACACCCAC
TATGTCGCCGACAGCCACGCCCACTGCGATGCCCACTGCCACGCCCACTG
CGATGCCCACTGCCGCACCTACTACGTCGCCGACAGCCACACCGACTGCC
ACACCTACGACGTCGCCGACAGCCACACCGACTGCCACACCTACTATGTC
GCCGACAGCCACACCGACTGCCACACCTACTATGGCGCCGACACCCACAC
CCACCGCCACACCTACTATGTCGCCGACAGCCTCGCCCACCGCCACACCT
ACTACGTCGCCGACAGCCACACCCACCGCCACACCCACTATGTCGCCGAC
AGCCACACCCACTGCCACACCCACTATGTCGCCGACAGCC
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protein sequence of rna7207

>rna7207-protein ID=rna7207-protein|Name=rna7207|organism=Nannochloropsis gaditana|type=polypeptide|length=105bp
MKTSPFTPSHLSQMRHRCEACSNSSLGLHVHQGLQMPLSRLAGTYKGMNG
TNYYHCHRLFAIQCLRCHCRNMIDCYGKTTPSSTCRCMKGRNNIAETQFN
SDTDR
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mRNA from alignment at CM002471.1:2816..3288+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7207 ID=rna7207|Name=rna7207|organism=Nannochloropsis gaditana|type=mRNA|length=473bp|location=Sequence derived from alignment at CM002471.1:2816..3288+ (Nannochloropsis gaditana)
ATGAAGACATCACCATTTACGCCATCCCACCTCTCACAAATGAGGCATCG
TTGCGAGGCATGCTCCAATTCATCTTTGGGACTGCATGTCCACCAAGGTT
TGCAAATGCCTCTGTCAAGGCTAGCTGGAACATACAAAGGAATGAACGGG
ACGAATTATTATCACTGTCATCGCCTCTTCGCCATTCAATGTCTTCGTTG
TCATTGTCGGAACATGATTGACTGCTAGTTCCGTCACTACTGGTCAGGAT
AACGTGATCTGACAAGACTATCCCGTCCACCTCTTGCAGATGTATGAAAG
GCAGGAGCAATATTGACGAAACTCGATCGAGCACCAGATAGCTTGAATAC
AGATAATTCTTTTGGGTTATAAAACGACCGAGTGGCAAgaccaccccgtc
ctccacgtgcAGATGTATGAAAGGCAGGAACAACATTGCTGAAACTCAGT
TTAACAGTGATAcagatagatag
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Coding sequence (CDS) from alignment at CM002471.1:2816..3288+

>rna7207 ID=rna7207|Name=rna7207|organism=Nannochloropsis gaditana|type=CDS|length=636bp|location=Sequence derived from alignment at CM002471.1:2816..3288+ (Nannochloropsis gaditana)
ATGAAGACATCACCATTTACGCCATCCCACCTCTCACAAATGAGGCATCG
TTGCGAGGCATGCTCCAATTCATCTTTGGGACTGCATGTCCACCAAGGTT
TGCAAATGCCTCTGTCAAGGCTAGCTGGAACATACAAAGGAATGAACGGG
ACGAATTATTATCACTGTCATCGCCTCTTCGCCATTCAATGTCTTCGTTG
TCATTGTCGGAACATGATTGACTGCTATGGCAAgaccaccccgtcctcca
cgtgcAGATGTATGAAAGGCAGGAACAACATTGCTGAAACTCAGTTTAAC
AGTGATAcagatagatagATGAAGACATCACCATTTACGCCATCCCACCT
CTCACAAATGAGGCATCGTTGCGAGGCATGCTCCAATTCATCTTTGGGAC
TGCATGTCCACCAAGGTTTGCAAATGCCTCTGTCAAGGCTAGCTGGAACA
TACAAAGGAATGAACGGGACGAATTATTATCACTGTCATCGCCTCTTCGC
CATTCAATGTCTTCGTTGTCATTGTCGGAACATGATTGACTGCTATGGCA
AgaccaccccgtcctccacgtgcAGATGTATGAAAGGCAGGAACAACATT
GCTGAAACTCAGTTTAACAGTGATAcagatagatag
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Synonyms
Publications