rna7202, rna7202 (mRNA) Nannochloropsis gaditana

Overview
Namerna7202
Unique Namerna7202
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1146
Alignment locationCM002470.1:698430..700140 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100198g9.5728.mrna
Orig protein idgnl|cribi|Naga_100198g9.5728
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:698430..700140 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100198g9gene6965Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7202rna7202-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23486.1cds7185Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7202 ID=rna7202|Name=rna7202|organism=Nannochloropsis gaditana|type=mRNA|length=1146bp
CATTTTACACCACACAGCTGGTGTCTCTCCTATCCTCTTTTTACTATGCA
CCGTCTTTTGCAGCCAATTTTCACGCTCTAATCCCTCCTATGGAAACAGG
GCATCCATTCTTCCTCCCTTGACTCTTTTTTTGGGGGTCAGCGAGATCGC
ACTTAGAATGATGAGTCTACGACTGGTTTTATTTCTGGGAGCATGCGTCT
TGCTCTCAGTGACAGCGCAAAATCAGACTAAACCAGACATCGAGTTCGTT
GGTTTCAAGGTCAACAGAGAGCAACAAATAAAGGGCAGAAACATCATGCT
CACTGCCACTGCGAATATGAAATTGATGGGGATCAATGATCTTATCTACT
GCGGATTTAAAAACTTGAATACAACGGGCTCACCGCCTGTTGAGACGGCC
CTTGCCGCGGCAGGGATTCGATTCTCCCAACAGCGCACGATGGCAAAAGC
GAAATGGTTCATTAAAGAGAAACGGTCCGCTGGCCGAATTATCTGGGAGT
TTGATCCTCGTGGATATGCTTTGACTGAAGGAAGAATCTACACTTATCGC
ATGAGAAACAAAGTGGCCAGGGACACGATTCCTGATTCTGTCACATGGGC
ATTTTTCTGCGAGACAAAGCTCACAGGACAGCCCAATTATTACTCCTTCC
AGGAATCTATCACGGTCCCTCTTGTCATGAGGAGAAAGTAAGTCTATTTC
AGCATTCTTGCGGTCAAATATCACGACAGATCAGAAGTAGTTACATTTTA
CTAATACGTCGAAGGCAACGGATTCTACTAGATATCAATTTGGCAAGGAT
AGATAGAGATTTTTAGGGAATTTAACAGGCATATACAATGTTGGATGGGA
ATGAGCGATACAAAGGGGGGGAAAGCAAAAAAGAGCAGTGCTCATTATTC
TGACCGACTTGTTGCTTGTGATTTTTTAAAAATGTGGGGCTAGAGAAGGA
GGCTCTCGTTTCTTTCGTTTAAATCTTGAGTAGACTTTATTTCAATGGAT
CACTTGACAGCTCGTGTGGATTCAGTCGAAAGAATAAGTGAATAGTTTAA
CATGTATTCACAGGTAAAACTTAATTTTTTGAACGGCAGCTTCTGTACTC
TTTTATCCTTTTGCGTACCAGTAAGGGGAATGCCATTGCCGTAAGT
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protein sequence of rna7202

>rna7202-protein ID=rna7202-protein|Name=rna7202|organism=Nannochloropsis gaditana|type=polypeptide|length=493bp
MFADNAFSHRESATTPMIFLKRSWLSIRTKRRSLLRLLSTLLLLVSMLLL
KHRGDSASKEGLFSTRIPALVAHDISSEINISSSMNEKQISEGDIAPCWF
TVHNAGERLKALDFNMHLPFNSTKFLGSSVFPPQEKSAGQEVAYIDTDGA
FVVRWKGLTLAPGQSLVFNVDFRVISISETGPINIQGLVEVMDTEGIHDT
SELTITLTKRPKITQKLLSEQRAKRFGTNPVRSFSSGHQTFERCRRLQLI
PAKVEKCLNICQNEGQSCLGCGFDQRTGCVCKRKEGDDRLIESVFPQEAW
EDRSTKDSMLDLSDDRRCEILVFPSLLSEEQLSAMKSYLSDLVLEHSEQR
MILETKNTSSLHDLIRDILPMSNVQFEDYVTFSEENVEVQPHYDAIKGGE
SHKLLLFLDEIAGTRFWESQDDFERNHCPLVVKPSRGTIVIFPMSLYHDS
ARFEPRNSIKRTLGLRVRLPFFDMTEAGTIGLVQAPVQIQEKL
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mRNA from alignment at CM002470.1:698430..700140+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7202 ID=rna7202|Name=rna7202|organism=Nannochloropsis gaditana|type=mRNA|length=1711bp|location=Sequence derived from alignment at CM002470.1:698430..700140+ (Nannochloropsis gaditana)
GTGGCAATGACACAGAACTTAACATATGTTTGCGGATAACGCTTTCTCAC
ATAGGGAAAGCGCTACTACCCCAATGATTTTCCTAAAAAGGAGTTGGCTT
TCTATTCGTACCAAGAGGAGATCATTGCTGAGACTTCTTAGTACCTTGCT
CTTGCTTGTCTCCATGCTTCTTCTCAAACATAGAGGTGATAGCGCCTCAA
AGGAGGGCTTGTTCTCGACTAGGATTCCAGCTTTAGTAGCTCACGATATT
TCTTCTGAAATAAATATCTCATCGTCAATGAATGAGAAGCAAATATCAGA
GGGAGACATTGCGCCTTGTTGGTTTACAGTGCATAATGCAGGGGAAAGAC
TGAAAGCCCTCGACTTTAACATGCATCTCCCCTTCAATAGTACCAAATTC
CTCGGATCAAGTGTATTTCCGCCTCAAGAAAAGTCTGCTGGACAAGAAGT
CGCGTATATTGATACGGATGGCGCATTCGTAgtgaggtggaaggggttgA
CATTGGCTCCTGGACAATCGCTGGTCTTCAATGTCGATTTCAGAGTCATA
TCAATATCTGAGACAGGTCCAATTAATATCCAGGGCTTGGTGGAGGTAAT
GGACACAGAAGGGATCCATGACACTTCTGAGTTAACGATTACATTAACAA
AACGCCCTAAGATTACGCAGAAGCTCCTTAGCGAGCAGCGGGCAAAGCGA
TTTGGAACTAATCCCGTACGATCTTTTAGTTCTGGTCACCAGACTTTTGA
GCGATGCAGGAGATTGCAATTAATACCTGCCAAGGTGGAAAAATGCTTGA
ATATCTGCCAAAACGAAGGACAATCATGTTTGGGGTGTGGATTCGACCAG
CGTACTGGCTGTGTTTgcaaaaggaaggagggagatgacagACTAATAGA
AAGCGTCTTTCCACAGGAAGCTTGGGAGGACAGGAGTACCAAGGACTCGA
TGCTTGATTTATCTGATGATAGAAGATGTGAAATTTTGGTGTTTCCCAGC
CTTCTCTCTGAAGAACAGTTGAGTGCGATGAAATCTTACTTATCCGATTT
AGTGCTTGAGCACAGCGAACAACGGATGATATTGGAAACAAAAAATACAA
GTTCGCTTCACGACCTTATTCGAGACATTTTGCCGATGTCTAACGTGCAA
TTTGAGGACTACGTTACATTCTCTGAAGAGAACGTGGAGGTACAGCCGCA
CTATGACGCCATCAAAGGCGGGGAGTCGCATAAATTACTGCTTTTCTTGG
ATGAAATTGCAGGGACTCGGTTTTGGGAAAGCCAGGACGATTTTGAGAGG
AATCACTGTCCATTGGTGGTCAAACCATCGCGAGGGACTATTGTAATATT
TCCCATGTCACTGTATCACGATTCAGCGCGCTTCGAGCCTCGGAACAGTA
TTAAGCGCACCCTAGGTTTACGGGTAAGGCTACCTTTTTTCGATATGACA
GAAGCTGGTACAATTGGGCTTGTGCAAGCTCCAGTGCAAATCCAAGAGAA
GCTATAGTCAAGTATTTCTTCAAGGAATGAAGTATTTCTTCAAGAAAAAC
TTTCCTCTTAAAGTGGTGATAGATGCTTGGTGAGCTCCATGTATTCCTTT
TGGCTGGCAATTTCTCTCCCCATTGAAGCACTCCACCGAAATAACGACCA
TTGGTCAATGATTTGTGACGTGCCCAGTAGTGAAAGAATATAATGAGCAA
TTCCTTGGATA
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Coding sequence (CDS) from alignment at CM002470.1:698430..700140+

>rna7202 ID=rna7202|Name=rna7202|organism=Nannochloropsis gaditana|type=CDS|length=1482bp|location=Sequence derived from alignment at CM002470.1:698430..700140+ (Nannochloropsis gaditana)
ATGTTTGCGGATAACGCTTTCTCACATAGGGAAAGCGCTACTACCCCAAT
GATTTTCCTAAAAAGGAGTTGGCTTTCTATTCGTACCAAGAGGAGATCAT
TGCTGAGACTTCTTAGTACCTTGCTCTTGCTTGTCTCCATGCTTCTTCTC
AAACATAGAGGTGATAGCGCCTCAAAGGAGGGCTTGTTCTCGACTAGGAT
TCCAGCTTTAGTAGCTCACGATATTTCTTCTGAAATAAATATCTCATCGT
CAATGAATGAGAAGCAAATATCAGAGGGAGACATTGCGCCTTGTTGGTTT
ACAGTGCATAATGCAGGGGAAAGACTGAAAGCCCTCGACTTTAACATGCA
TCTCCCCTTCAATAGTACCAAATTCCTCGGATCAAGTGTATTTCCGCCTC
AAGAAAAGTCTGCTGGACAAGAAGTCGCGTATATTGATACGGATGGCGCA
TTCGTAgtgaggtggaaggggttgACATTGGCTCCTGGACAATCGCTGGT
CTTCAATGTCGATTTCAGAGTCATATCAATATCTGAGACAGGTCCAATTA
ATATCCAGGGCTTGGTGGAGGTAATGGACACAGAAGGGATCCATGACACT
TCTGAGTTAACGATTACATTAACAAAACGCCCTAAGATTACGCAGAAGCT
CCTTAGCGAGCAGCGGGCAAAGCGATTTGGAACTAATCCCGTACGATCTT
TTAGTTCTGGTCACCAGACTTTTGAGCGATGCAGGAGATTGCAATTAATA
CCTGCCAAGGTGGAAAAATGCTTGAATATCTGCCAAAACGAAGGACAATC
ATGTTTGGGGTGTGGATTCGACCAGCGTACTGGCTGTGTTTgcaaaagga
aggagggagatgacagACTAATAGAAAGCGTCTTTCCACAGGAAGCTTGG
GAGGACAGGAGTACCAAGGACTCGATGCTTGATTTATCTGATGATAGAAG
ATGTGAAATTTTGGTGTTTCCCAGCCTTCTCTCTGAAGAACAGTTGAGTG
CGATGAAATCTTACTTATCCGATTTAGTGCTTGAGCACAGCGAACAACGG
ATGATATTGGAAACAAAAAATACAAGTTCGCTTCACGACCTTATTCGAGA
CATTTTGCCGATGTCTAACGTGCAATTTGAGGACTACGTTACATTCTCTG
AAGAGAACGTGGAGGTACAGCCGCACTATGACGCCATCAAAGGCGGGGAG
TCGCATAAATTACTGCTTTTCTTGGATGAAATTGCAGGGACTCGGTTTTG
GGAAAGCCAGGACGATTTTGAGAGGAATCACTGTCCATTGGTGGTCAAAC
CATCGCGAGGGACTATTGTAATATTTCCCATGTCACTGTATCACGATTCA
GCGCGCTTCGAGCCTCGGAACAGTATTAAGCGCACCCTAGGTTTACGGGT
AAGGCTACCTTTTTTCGATATGACAGAAGCTGGTACAATTGGGCTTGTGC
AAGCTCCAGTGCAAATCCAAGAGAAGCTATAG
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Synonyms
Publications