rna7188, rna7188 (mRNA) Nannochloropsis gaditana

Overview
Namerna7188
Unique Namerna7188
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length228
Alignment locationCM002470.1:662120..663065 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100868g2.3651.mrna
Orig protein idgnl|cribi|Naga_100868g2.3651
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:662120..663065 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100868g2gene6951Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23502.1cds7171Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7188rna7188-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7188 ID=rna7188|Name=rna7188|organism=Nannochloropsis gaditana|type=mRNA|length=228bp
ATGTGTCGCAGCACTTCCTACACGGTGATGCCATCCGGCCGCCTCCAGTT
TATTTTCCGACCCCGCGCGGACTTTGTGTCCTACTCGCCCCCCACCTTCA
AGAGTCTGGGGGGAGGCATCGTCAGCACAGCCAAGGACTTCACACGTTTC
GGACAGATGCTTCTGAACGGCGGCACCTTGGACGGCGTGCGCATCCTTTC
CCCCCAGTCCCGACCCCAACACCGGTAA
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protein sequence of rna7188

>rna7188-protein ID=rna7188-protein|Name=rna7188|organism=Nannochloropsis gaditana|type=polypeptide|length=103bp
MNRTRRECAMSERISVGCHELTWAGICGGREHIQPVNNREVMPDPWLLRN
QGPRSERAYLLEVSGTTSPQGVGQGSVANTAWAVGGGGETWMQKSRGETP
AWL
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mRNA from alignment at CM002470.1:662120..663065-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7188 ID=rna7188|Name=rna7188|organism=Nannochloropsis gaditana|type=mRNA|length=946bp|location=Sequence derived from alignment at CM002470.1:662120..663065- (Nannochloropsis gaditana)
AGATGCGGGTTCTGAGGAGAGTGTTCGAAGTATCTTGTGTGTGTGACGGC
GGATATAAGATATGAAGTGGTGCGACGGAAGATGGTTCTCAACTGCAAGC
GACCCGATCGGACCCCGTCAATTTTGGCACCTTTCCAAAGGACATTATGA
GTTACACCAGGCGAATTCCTATGTAATGATATAGAATTTATAATTTGTGT
GACAGCGGGAGAAGGGATCCATGCTGCGGCTTCCTCGTGCAGGAGAAGAA
ATCACAGGAAAAAGAACAATTGAAGGGGGCATGGCTAAATTCGCATGAAT
AGAACAAGACGAGAATGTGCTATGTCTGAAAGAATATCCGTTGGCTGTCA
CGAGTTGACGTGGGCGGGGATATGTGGGGGGAGGGAGCATATACAGCCGG
TCAATAACAGGGAAGTCATGCCGGACCCTTGGCTTTTGAGAAATCAGGGG
CCAAGATCCGAGCGAGCGTACCTCCTGGAAGTGTCTGGTACAACATCTCC
GCAGGGTGTCGGTCAAGGAAGTGTGGCGAACACCGCTTGGGCAGTTGGAG
GTGGCGGAGAGACATGGATGCAAAAGTCCCGGGGGGAGACGCCTGCTTGG
CTCTAGGAAAGTAAAGTGTTGCCCCTCCGAACTTTTATTAAACACGTCTC
TTTGCCGAAATTACATCCCCACGCGGTGTGTTGTCGGTTCCCTGGCCGGC
ATGTCGCATCACAGGGCAAAGAAGAGGGCAATGGAGCCGTCCCAAGCCAT
GAGACGGGTATTTTCACTCCATGAAGAGGCATAGGAAAAAAACGAGGCCG
GAGAGGATAGAGAGGATTCCTTGAAAGAAGCCCGAATGTCTTTCCTTGTT
GGTTTTTTCTTCTTTAAAATACGCGATTTGCTTTGACATGTCCTGATGTA
TGGATTTCCCCGGAAGATTTAATTCAGCCCTAGTCATACCTCCCCC
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Coding sequence (CDS) from alignment at CM002470.1:662120..663065-

>rna7188 ID=rna7188|Name=rna7188|organism=Nannochloropsis gaditana|type=CDS|length=312bp|location=Sequence derived from alignment at CM002470.1:662120..663065- (Nannochloropsis gaditana)
ATGAATAGAACAAGACGAGAATGTGCTATGTCTGAAAGAATATCCGTTGG
CTGTCACGAGTTGACGTGGGCGGGGATATGTGGGGGGAGGGAGCATATAC
AGCCGGTCAATAACAGGGAAGTCATGCCGGACCCTTGGCTTTTGAGAAAT
CAGGGGCCAAGATCCGAGCGAGCGTACCTCCTGGAAGTGTCTGGTACAAC
ATCTCCGCAGGGTGTCGGTCAAGGAAGTGTGGCGAACACCGCTTGGGCAG
TTGGAGGTGGCGGAGAGACATGGATGCAAAAGTCCCGGGGGGAGACGCCT
GCTTGGCTCTAG
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Synonyms
Publications