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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100581g3.1271.mrna |
| Orig protein id | gnl|cribi|Naga_100581g3.1271 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002470.1 | supercontig | CM002470.1:651466..654990 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna7183 ID=rna7183|Name=rna7183|organism=Nannochloropsis gaditana|type=mRNA|length=222bp
ATGGACCATGTGATTCTGAAATGCCAGTGGGTTCAGGAGGGGCCCTGGCT
GTTTTTATTTTTCAAAAAAATCGTTGTCAGCGTGGAATGTGTGACAATGC
GTTGTGCAATTTCATCTCTGTGTGTGCGTGGCATTTTTAGCTGTTCTCTC
GCTTTGTTCTATCGCGTTTACCGTGGCGACGTAAAATGTGGATTAAAAAT
CACGTTTCCATGCATTAAGTGA back to topprotein sequence of rna7183 >rna7183-protein ID=rna7183-protein|Name=rna7183|organism=Nannochloropsis gaditana|type=polypeptide|length=217bp
MTCNTRSCLASCLCPLIIHHTYRKHRTAPSKDMRFHATTCTFYLLLGALA
LVHGDTMNTPNLRRAQEASAETTVEKVQEPAAEASMPAVAAPDANTPNLR
MDMPMPGAMDGMNMEEGPPTEGDDNHRKLWWWNKYNNWGWNDPWAWKYGQ
KYGGWNNGWNNGWGNQWNNGWNNGWGNNNWNNGWNNGWNNGWNNNWNNGW
NNGGWNQWNNVNRWNWV back to topmRNA from alignment at CM002470.1:651466..654990+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7183 ID=rna7183|Name=rna7183|organism=Nannochloropsis gaditana|type=mRNA|length=3525bp|location=Sequence derived from alignment at CM002470.1:651466..654990+ (Nannochloropsis gaditana)
ACTCGTTGACAGTGTCGTGATTGTCTTCATTCAACGACTTTCCCTGTGTT
CTACTTCGTCGTCACTTcaatctcctttcctcctgcatcaCTTCACTTGT
TCCCGGAGATATAAAAGTGCACAAAGTTGAGCTCCCAATGGCAGCACTGT
ACTCATGACTTGTAACACTAGATCATGTTTAGCTTCATGTCTCTGCCCTT
TGATCATACATCACACTTATCGCAAACATAGAACAGCACCTTCCAAAGAT
ATGCGATTTCACGCCACCACCTGCACCTTCTATCTGCTCCTTGGCGCTTT
AGCCTTGGTCCATGGCGACACTATGAACACTCCCAACCTTCGCAGGGTAA
GTTTTATTCTTTTGGTTAGGGCTTGATTGTGTTCAGGAGACTGATCAGGC
AGGAAAGATCTCGCCCGGTCCCGATCACGTACTTTCGCCCATCATGAATC
TCATCTTCTATACGCTGACACACACAGGCGCAAGAAGCGTCGGCTGAGAC
CACAGTCGAGAAGGTACAAGAACCTGCGGCGGAGGCAAGCATGCCTGCGG
TGGCGGCTCCGGATGCCAACACACCGAACCTCCGCATGGTAGGAGCACCC
TCCGTGGGTAGCCGGGATGACGGGCGTGACTCGACCAGGCAAGGCTCACC
TCCACACTACCACTCTTGCATACGAACAGGATATGCCCATGCCTGGGGCG
ATGGACGGCATgaacatggaggagggccccCCCACAGAGGGAGATGATAA
CCATCGAAAGGTGCGTACGACCAGCGTTTTTTCGTGCCCGGCTGTTCTAG
TTTTCCTCTTGGATGCCTCTCTGTCGCAGTATCAGGGCCTGGTGGCTCTC
ATTCCGCTTGGCATTATATTGTGAACTCATTCGCACTGCACtaccttttc
ccttctcccatcgtccgccctctctctACCCCCTGGTACAGCTCTGGTGG
TGGAACAAGTACAACAACTGGGGCTGGAACGACCCGGTAAGTCCCATTTC
CATAGACCAGCGCTCATTGATAGACAGCTCATACATTTCCCTCCTGTATG
ACTTGGATCTCCACTCATCCACtgatcccaccctccctccctccctccct
ccctctcttgtaGTGGGCCTGGAAGTATGGCCAGAAGTACGGCGGCTGGA
ACAATGGCTGGAACAACGGCTGGGGCAACCAGGTGAGAGTTGCTCCCCCT
TATTCATAGCATCTCGTGCCCCCGCAAGCACTATGGACCTGTCTGTTCAA
ACCCGACGTGCCCCCGTATCCTGAATCCCGGCGCACGGAGAGCCAGTGGA
CGCGCGGTTTCCTCCCCGGACCTTCCAAGGAGGAAACCTCGGCCCTTTTT
AATAAGGATTCGCACTCACGCTCCCTCCtacgcttcccccctcccagtgG
AACAACGGCTGGAACAACGGCTGGGGCAACAACGTAAGCATCcatgtctt
ctcccctcattccctccttttcctgtgGGAGAGGtatcgtcctcccccag
aTGTGCCGCCTGGTCTCCTCGACACGGTTCTCAGTACTGTTCCTTCGGAC
TTACCCTtgttctcccccctctcgtaCCCTCGCAGTGGAACAACGGCTGG
AACAACGGCTGGAACAATGGCTGGGGCAACAACGTGAGTAGCGCGAAGGC
CTGCATCGAGAGATGGTTGTCTAGTGGTCCTTCTTGCATGGGCCCTCCTT
CTGATCTGATTTTTTATATCCCTCAGAACTGGAACAACGGCTGGAACAAC
GGCTGGAACAACGGCTGGAACAACAACGTGAGTGGTTTAGAGAGGTCGTT
TGACTAGTCCTttttttcgtcctcccctctctcctctgctTGTCAtagtt
ccccccccctccggctcgccctccctcccctcctcttgctcccgcaccac
cccctccactctTACtatcctccttgtcctttaAGCTTTTATCCCCGTGA
CCCCtcacttcccttcccccacctgcCAAATCCTAACATCaaatcctctt
ccccgccccctgcgtGACTCTCACCACTGTCTTCGTGACTGCTTTCACCC
TCATCGCGTGcaccccccctttcccttccataCCATgaaacctcctgccc
ccagTGGAACAACAATCAGGTTAGTCCGCACGGAGCACACCACTCGACCT
CGTCTTGCTCACCCCGATTACATTCACCTTGATCCACATCCCCCTATTCC
CCCATACACCCCTTTACtaccatgtcctcctcctcgtcctcccccttgcc
ctctccattctccacctccagtGGAATAAGAACGGACAGGGCCAGGTGAC
TAGGCCCGCGATCACAGAGCCCGCTTTCTTATGATGCTGTCATTTCTATC
TCCCTCAATATGACCGCAAAAATTGTCAGACACGAATCGCTCCCAATACT
TGTCTAGCTCGAGCCGCCACACATACATATATGCATCCAACCCTGCATTT
CTGTTTCTGATCGTACCTCGGTGGTTAAATTGACCTCCGCAAGCCGCTGC
CTCGCTCTCTACTGGCACTCACCGTcaactccctcttccccttttttccc
ttttgcAGTGGAACAACGGCTGGAACAACGGCGGATGGAACCAGGTAAGC
CCCACGTCCACattcggcccctccctcgtcctttccttcccttttccatc
acatcccCGCGTCATCGCGTGCGACTTGTCTCCGTGTATCCCTCATGAAA
CACACTTTCCTTATTGCATTCGCCAGTGCCTCCGAGAagctcctccccca
gacCTTGCCTTCTCACGTTCTCCCTCTcgattccccctcccctcctttct
gttAGTGGAACAACGTCAACCGTTGGAACTGGGTCTAAGCGTGCGTGCAT
CTGAAGATACCGCCGACTGTTCAGGCACCTAACTGTACAAAAAGGATGAT
TCACGCCTATGGTTCCgccctggaggtggaggaataATCGAATGGAGGAA
AACGTGTCGAGAGAGACCTTTGATCGGGTTTATGTGAGAAGTCTTGCACC
CTTTATCGGTGTTGTTAGTTTATGACTGCCCGCgatggggagagagagag
gatttGACTACATATACGTGTATTGTGACTCCCGCAAACCAGAACATGAT
TTATGGCGAAGCACCGGGGCCTATAGAGGAAGCGGAtgaggagagaagag
aaggcagCGGGAAAAGCTAGAAACGGGGATGGTGGAATGGAGATCCCATA
ACTGAAAGGCTTTGGTTCAGCAAAAGTTGGTTTTTAAAAGAGAAAAGTAA
GGACCGTTGAGTAACACGAAGTAGGCCAAAGGGATGAGTGGACGGGGACG
CAAAAATATCGGCGGTGagcgaagaaaggagacgGACTCTATTCAAGTGA
ATGGGAAACGACGCAGTGTTTGAGTACTTAACTTCGAAAGAAAAGTCATG
ACGAGCCGaatcctttccatccttttcgtTTTATGCGTTATATGTTCAGT
ACCTCTCTACAAGTTGTTCGGCCGTGCTACTTTGCCTTATGACAATCCAG
AACACAGGCTGCAAATACCGATTCA back to topCoding sequence (CDS) from alignment at CM002470.1:651466..654990+ >rna7183 ID=rna7183|Name=rna7183|organism=Nannochloropsis gaditana|type=CDS|length=5886bp|location=Sequence derived from alignment at CM002470.1:651466..654990+ (Nannochloropsis gaditana)
ATGACTTGTAACACTAGATCATGTTTAGCTTCATGTCTCTGCCCTTTGAT
CATACATCACACTTATCGCAAACATAGAACAGCACCTTCCAAAGATATGC
GATTTCACGCCACCACCTGCACCTTCTATCTGCTCCTTGGCGCTTTAGCC
TTGGTCCATGGCGACACTATGAACACTCCCAACCTTCGCAGGGCGCAAGA
AGCGTCGGCTGAGACCACAGTCGAGAAGGTACAAGAACCTGCGGCGGAGG
CAAGCATGCCTGCGGTGGCGGCTCCGGATGCCAACACACCGAACCTCCGC
ATGGATATGCCCATGCCTGGGGCGATGGACGGCATgaacatggaggaggg
ccccCCCACAGAGGGAGATGATAACCATCGAAAGCTCTGGTGGTGGAACA
AGTACAACAACTGGGGCTGGAACGACCCGTGGGCCTGGAAGTATGGCCAG
AAGTACGGCGGCTGGAACAATGGCTGGAACAACGGCTGGGGCAACCAGtg
GAACAACGGCTGGAACAACGGCTGGGGCAACAACAACTGGAACAACGGCT
GGAACAACGGCTGGAACAACGGCTGGAACAACAACTGGAACAACGGCTGG
AACAACGGCGGATGGAACCAGTGGAACAACGTCAACCGTTGGAACTGGGT
CTAAATGACTTGTAACACTAGATCATGTTTAGCTTCATGTCTCTGCCCTT
TGATCATACATCACACTTATCGCAAACATAGAACAGCACCTTCCAAAGAT
ATGCGATTTCACGCCACCACCTGCACCTTCTATCTGCTCCTTGGCGCTTT
AGCCTTGGTCCATGGCGACACTATGAACACTCCCAACCTTCGCAGGGCGC
AAGAAGCGTCGGCTGAGACCACAGTCGAGAAGGTACAAGAACCTGCGGCG
GAGGCAAGCATGCCTGCGGTGGCGGCTCCGGATGCCAACACACCGAACCT
CCGCATGGATATGCCCATGCCTGGGGCGATGGACGGCATgaacatggagg
agggccccCCCACAGAGGGAGATGATAACCATCGAAAGCTCTGGTGGTGG
AACAAGTACAACAACTGGGGCTGGAACGACCCGTGGGCCTGGAAGTATGG
CCAGAAGTACGGCGGCTGGAACAATGGCTGGAACAACGGCTGGGGCAACC
AGtgGAACAACGGCTGGAACAACGGCTGGGGCAACAACAACTGGAACAAC
GGCTGGAACAACGGCTGGAACAACGGCTGGAACAACAACTGGAACAACGG
CTGGAACAACGGCGGATGGAACCAGTGGAACAACGTCAACCGTTGGAACT
GGGTCTAAATGACTTGTAACACTAGATCATGTTTAGCTTCATGTCTCTGC
CCTTTGATCATACATCACACTTATCGCAAACATAGAACAGCACCTTCCAA
AGATATGCGATTTCACGCCACCACCTGCACCTTCTATCTGCTCCTTGGCG
CTTTAGCCTTGGTCCATGGCGACACTATGAACACTCCCAACCTTCGCAGG
GCGCAAGAAGCGTCGGCTGAGACCACAGTCGAGAAGGTACAAGAACCTGC
GGCGGAGGCAAGCATGCCTGCGGTGGCGGCTCCGGATGCCAACACACCGA
ACCTCCGCATGGATATGCCCATGCCTGGGGCGATGGACGGCATgaacatg
gaggagggccccCCCACAGAGGGAGATGATAACCATCGAAAGCTCTGGTG
GTGGAACAAGTACAACAACTGGGGCTGGAACGACCCGTGGGCCTGGAAGT
ATGGCCAGAAGTACGGCGGCTGGAACAATGGCTGGAACAACGGCTGGGGC
AACCAGtgGAACAACGGCTGGAACAACGGCTGGGGCAACAACAACTGGAA
CAACGGCTGGAACAACGGCTGGAACAACGGCTGGAACAACAACTGGAACA
ACGGCTGGAACAACGGCGGATGGAACCAGTGGAACAACGTCAACCGTTGG
AACTGGGTCTAAATGACTTGTAACACTAGATCATGTTTAGCTTCATGTCT
CTGCCCTTTGATCATACATCACACTTATCGCAAACATAGAACAGCACCTT
CCAAAGATATGCGATTTCACGCCACCACCTGCACCTTCTATCTGCTCCTT
GGCGCTTTAGCCTTGGTCCATGGCGACACTATGAACACTCCCAACCTTCG
CAGGGCGCAAGAAGCGTCGGCTGAGACCACAGTCGAGAAGGTACAAGAAC
CTGCGGCGGAGGCAAGCATGCCTGCGGTGGCGGCTCCGGATGCCAACACA
CCGAACCTCCGCATGGATATGCCCATGCCTGGGGCGATGGACGGCATgaa
catggaggagggccccCCCACAGAGGGAGATGATAACCATCGAAAGCTCT
GGTGGTGGAACAAGTACAACAACTGGGGCTGGAACGACCCGTGGGCCTGG
AAGTATGGCCAGAAGTACGGCGGCTGGAACAATGGCTGGAACAACGGCTG
GGGCAACCAGtgGAACAACGGCTGGAACAACGGCTGGGGCAACAACAACT
GGAACAACGGCTGGAACAACGGCTGGAACAACGGCTGGAACAACAACTGG
AACAACGGCTGGAACAACGGCGGATGGAACCAGTGGAACAACGTCAACCG
TTGGAACTGGGTCTAAATGACTTGTAACACTAGATCATGTTTAGCTTCAT
GTCTCTGCCCTTTGATCATACATCACACTTATCGCAAACATAGAACAGCA
CCTTCCAAAGATATGCGATTTCACGCCACCACCTGCACCTTCTATCTGCT
CCTTGGCGCTTTAGCCTTGGTCCATGGCGACACTATGAACACTCCCAACC
TTCGCAGGGCGCAAGAAGCGTCGGCTGAGACCACAGTCGAGAAGGTACAA
GAACCTGCGGCGGAGGCAAGCATGCCTGCGGTGGCGGCTCCGGATGCCAA
CACACCGAACCTCCGCATGGATATGCCCATGCCTGGGGCGATGGACGGCA
TgaacatggaggagggccccCCCACAGAGGGAGATGATAACCATCGAAAG
CTCTGGTGGTGGAACAAGTACAACAACTGGGGCTGGAACGACCCGTGGGC
CTGGAAGTATGGCCAGAAGTACGGCGGCTGGAACAATGGCTGGAACAACG
GCTGGGGCAACCAGtgGAACAACGGCTGGAACAACGGCTGGGGCAACAAC
AACTGGAACAACGGCTGGAACAACGGCTGGAACAACGGCTGGAACAACAA
CTGGAACAACGGCTGGAACAACGGCGGATGGAACCAGTGGAACAACGTCA
ACCGTTGGAACTGGGTCTAAATGACTTGTAACACTAGATCATGTTTAGCT
TCATGTCTCTGCCCTTTGATCATACATCACACTTATCGCAAACATAGAAC
AGCACCTTCCAAAGATATGCGATTTCACGCCACCACCTGCACCTTCTATC
TGCTCCTTGGCGCTTTAGCCTTGGTCCATGGCGACACTATGAACACTCCC
AACCTTCGCAGGGCGCAAGAAGCGTCGGCTGAGACCACAGTCGAGAAGGT
ACAAGAACCTGCGGCGGAGGCAAGCATGCCTGCGGTGGCGGCTCCGGATG
CCAACACACCGAACCTCCGCATGGATATGCCCATGCCTGGGGCGATGGAC
GGCATgaacatggaggagggccccCCCACAGAGGGAGATGATAACCATCG
AAAGCTCTGGTGGTGGAACAAGTACAACAACTGGGGCTGGAACGACCCGT
GGGCCTGGAAGTATGGCCAGAAGTACGGCGGCTGGAACAATGGCTGGAAC
AACGGCTGGGGCAACCAGtgGAACAACGGCTGGAACAACGGCTGGGGCAA
CAACAACTGGAACAACGGCTGGAACAACGGCTGGAACAACGGCTGGAACA
ACAACTGGAACAACGGCTGGAACAACGGCGGATGGAACCAGTGGAACAAC
GTCAACCGTTGGAACTGGGTCTAAATGACTTGTAACACTAGATCATGTTT
AGCTTCATGTCTCTGCCCTTTGATCATACATCACACTTATCGCAAACATA
GAACAGCACCTTCCAAAGATATGCGATTTCACGCCACCACCTGCACCTTC
TATCTGCTCCTTGGCGCTTTAGCCTTGGTCCATGGCGACACTATGAACAC
TCCCAACCTTCGCAGGGCGCAAGAAGCGTCGGCTGAGACCACAGTCGAGA
AGGTACAAGAACCTGCGGCGGAGGCAAGCATGCCTGCGGTGGCGGCTCCG
GATGCCAACACACCGAACCTCCGCATGGATATGCCCATGCCTGGGGCGAT
GGACGGCATgaacatggaggagggccccCCCACAGAGGGAGATGATAACC
ATCGAAAGCTCTGGTGGTGGAACAAGTACAACAACTGGGGCTGGAACGAC
CCGTGGGCCTGGAAGTATGGCCAGAAGTACGGCGGCTGGAACAATGGCTG
GAACAACGGCTGGGGCAACCAGtgGAACAACGGCTGGAACAACGGCTGGG
GCAACAACAACTGGAACAACGGCTGGAACAACGGCTGGAACAACGGCTGG
AACAACAACTGGAACAACGGCTGGAACAACGGCGGATGGAACCAGTGGAA
CAACGTCAACCGTTGGAACTGGGTCTAAATGACTTGTAACACTAGATCAT
GTTTAGCTTCATGTCTCTGCCCTTTGATCATACATCACACTTATCGCAAA
CATAGAACAGCACCTTCCAAAGATATGCGATTTCACGCCACCACCTGCAC
CTTCTATCTGCTCCTTGGCGCTTTAGCCTTGGTCCATGGCGACACTATGA
ACACTCCCAACCTTCGCAGGGCGCAAGAAGCGTCGGCTGAGACCACAGTC
GAGAAGGTACAAGAACCTGCGGCGGAGGCAAGCATGCCTGCGGTGGCGGC
TCCGGATGCCAACACACCGAACCTCCGCATGGATATGCCCATGCCTGGGG
CGATGGACGGCATgaacatggaggagggccccCCCACAGAGGGAGATGAT
AACCATCGAAAGCTCTGGTGGTGGAACAAGTACAACAACTGGGGCTGGAA
CGACCCGTGGGCCTGGAAGTATGGCCAGAAGTACGGCGGCTGGAACAATG
GCTGGAACAACGGCTGGGGCAACCAGtgGAACAACGGCTGGAACAACGGC
TGGGGCAACAACAACTGGAACAACGGCTGGAACAACGGCTGGAACAACGG
CTGGAACAACAACTGGAACAACGGCTGGAACAACGGCGGATGGAACCAGT
GGAACAACGTCAACCGTTGGAACTGGGTCTAAATGACTTGTAACACTAGA
TCATGTTTAGCTTCATGTCTCTGCCCTTTGATCATACATCACACTTATCG
CAAACATAGAACAGCACCTTCCAAAGATATGCGATTTCACGCCACCACCT
GCACCTTCTATCTGCTCCTTGGCGCTTTAGCCTTGGTCCATGGCGACACT
ATGAACACTCCCAACCTTCGCAGGGCGCAAGAAGCGTCGGCTGAGACCAC
AGTCGAGAAGGTACAAGAACCTGCGGCGGAGGCAAGCATGCCTGCGGTGG
CGGCTCCGGATGCCAACACACCGAACCTCCGCATGGATATGCCCATGCCT
GGGGCGATGGACGGCATgaacatggaggagggccccCCCACAGAGGGAGA
TGATAACCATCGAAAGCTCTGGTGGTGGAACAAGTACAACAACTGGGGCT
GGAACGACCCGTGGGCCTGGAAGTATGGCCAGAAGTACGGCGGCTGGAAC
AATGGCTGGAACAACGGCTGGGGCAACCAGtgGAACAACGGCTGGAACAA
CGGCTGGGGCAACAACAACTGGAACAACGGCTGGAACAACGGCTGGAACA
ACGGCTGGAACAACAACTGGAACAACGGCTGGAACAACGGCGGATGGAAC
CAGTGGAACAACGTCAACCGTTGGAACTGGGTCTAA back to top
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