rna7165, rna7165 (mRNA) Nannochloropsis gaditana

Overview
Namerna7165
Unique Namerna7165
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1658
Alignment locationCM002470.1:598631..599419 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100940g1.3589.mrna
Orig protein idgnl|cribi|Naga_100940g1.3589
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:598631..599419 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100940g1gene6927Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7165rna7165-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23525.1cds7148Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7165 ID=rna7165|Name=rna7165|organism=Nannochloropsis gaditana|type=mRNA|length=1658bp
TCATAACGTGCGTCATGCGTTGTGACTGTCACGAGGGATTTCCTTGATGC
AAGCCCTTCCAGTCTGATTGACCACCTAATGGCTGCGTTGTCGCAGGATC
TCTTTCCTTGGCGAGGCATTAGATCGTCGCTCCTGGCGGTGCATGCTCCC
ATGGTTTCGGGAAAATCCGAATAGCACAGGATGTGTTTTATCGCCACCAC
TCAACATCACAACAAGTAGGAACGTGGAAGCGTGACCGGGGAGGTAAGGG
GTAATTATAACAAGAGAAGTGATCGATTTGAGTCCTCATCGGATGGCTAC
CACTCAGTTCTTGCACCTTTAGCAGCTTCCAAGCCAGATTACTTAGGTTT
TAGAATTACATCCGCCTCCTCTCACGGCGTAATGTTACGTTTTCATACCT
CCAACACGTCAGGCAGGAGGTGGGAAAGGCCAAGGGCAAGCGCACGGCCA
GTTTTACCAAACAACCATACACATTGATATATGGAAAGCATTGAAGCCTT
GACCGATGTTGAGTGTAGGGCGGGCGAGGAAGCCTTAAAACGAAGATACT
GCCGGCGTGCGAACAGCAGCACCAGCACACCCGCGGGCCCCACGATTCAC
TGCACGCAGCCATGCTCCATGGCGATCATCCATGCGCATGGAAAGGGATC
ACGCACGACCACGCAAAAGACAACTGCTTCCCGAGACTGGACCATCCACA
AACGTCGTCTCCCCTCGGGCACATCGCGTCAGCGCAAACGGAGACGGCCC
TTCCTCCCGGCCATGCTCCTCCTCGCGGGGGCCTTCGGAAATACGGGACC
AGGCAGCGAGCCGGTCGAGGCCTTCATTCCCCCTAGGCACCAGGGCATCG
CCCCCTACCGGGAGCGAAGGCCACTCACACACACTCACCCAGGTCACTCT
CACCCGGTGTTCAGGACCACGGGCGTGTCAGGGCGGTCATGCCAAAGCTA
CCGCGACCACGGGCCTTTCAAGCGAGGCGGGGCCGTTGAGGACGGAGAGG
AGCCTGGGAGTACTGAGGACAAGACCACACCTTCTTTTTCGGAGGACAGC
GATGGATTCGCGGGCACAGGCCTCTCTCCCAAGGAAGCCCTTGTCACCAT
CCTGGGAGTCAATCCGCTCACCCTCCTCCTTGCCTTCCTGGCCGCCGGTA
TGCTGACAGCCAATGCTATCTTGGGACCTGGCTGGCTCCGTCCTTCTGTG
GGCTTAAAACCGACCACCTTCCAGTCGAGGAATTTGGTCTTGCCGTTGGA
TCAACCGGGCTTCCTCTTCCCAAAAGATGCGTCCTTATGGGGGGGGGACC
CGGAGTGAGAGGGTCTGTGGAAGTCGAAACTGTCCGACGCTAGGAGATAA
CCTGGTCCAACGAAACAGGACTGGGCTCCTATACCGAATTGTGAATAGGT
GTACTGGAGGGAGCCGGGGATTGTAAAGGGAGAGCAGGGCATGTAACTGG
CGAGGAGAGGGGGGAGGTTACTTTTTAAAAAGTTATCAGGATTCCCTACT
TCAGGCTTTTAAGAATCGTACCCATCCTGAAAACAAAAAAGCTACTATAT
TATGCCATGTTGTAATTGGAACTTTCGGGCACCACGTACTTGGGTATGGC
ACGAGCGACTTTTGAGTATTTTGGCTTGTCTGAACATTCCGTCTAGCTCC
CTCCGTCC
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protein sequence of rna7165

>rna7165-protein ID=rna7165-protein|Name=rna7165|organism=Nannochloropsis gaditana|type=polypeptide|length=114bp
MLTFVRSTTSSRTCRCAFCLVLAVTAARTPSFTSTPAAFSSFFPSPPRLR
LRPRPLPPVMEPPLSSFASYSSSSSSTSPSTHIKHGAALTPLTTSSSSSS
SSSSSSSSSSSSSS
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mRNA from alignment at CM002470.1:598631..599419+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7165 ID=rna7165|Name=rna7165|organism=Nannochloropsis gaditana|type=mRNA|length=789bp|location=Sequence derived from alignment at CM002470.1:598631..599419+ (Nannochloropsis gaditana)
GAAGGGGCTTCAGGATCAAGCTTGAGAGCGACACGAGGGAAAATTTGTGA
AAGCATCGCGACGTGTTGGTCACGAATAATTACGCTCGCAGCCGAGGGCA
GGGCCGCACTTTCAGCTTCGGGTTGCTAAGTGGCACCTTGCGTTGGCTGT
CAAAATCACCGCAGACTTCCACCCCCGACGGCGCTGCTGTGGCTTTTATG
CTGACCTTTGTCCGAAGCACTACCTCGTCTCGCACTTGCCGGTGTGCCTT
CTGCTTGGTCTTGGCGGTGGTAAGTGGAACAAGATCGGGGGGAAGCACGA
AGCCTCAATATTCCTCCCATTTAACCAGCCTTTATCTTCTTAGTCACGGA
CGTACTCATTCTTAGACCCGCACAAATGATGTATATTGGGAGTACAGGAC
GCCAGTCGAggcttttttttttaaaaagagAAAAGTTTGGACTCTTTTTT
GCCTTTAATAACTTGGTTCTTAGCTTACCCTTTCTCGCCCCaacctcctt
catctcccctccctcccagacGGCCGCCCGCACCCcgtccttcacctcca
cgccTGCTGCCTTCAGCTcgttttttccctcccccccccgacttCGTCTT
AGGCCACGGCCTCTACCTCCAGTGATGgagcctcccctttcctccttcgc
ttcctactcctcctcctcctcctccaccagcccttCCACGCACATCAAGC
ACGGCGCAGCCCTCACACCGCTcacaacttcctcctcctcctcctcctcc
tcctcctcctcctcctcctcctcctcctcctcctcctcc
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Coding sequence (CDS) from alignment at CM002470.1:598631..599419+

>rna7165 ID=rna7165|Name=rna7165|organism=Nannochloropsis gaditana|type=CDS|length=684bp|location=Sequence derived from alignment at CM002470.1:598631..599419+ (Nannochloropsis gaditana)
ATGCTGACCTTTGTCCGAAGCACTACCTCGTCTCGCACTTGCCGGTGTGC
CTTCTGCTTGGTCTTGGCGGTGacGGCCGCCCGCACCCcgtccttcacct
ccacgccTGCTGCCTTCAGCTcgttttttccctcccccccccgacttCGT
CTTAGGCCACGGCCTCTACCTCCAGTGATGgagcctcccctttcctcctt
cgcttcctactcctcctcctcctcctccaccagcccttCCACGCACATCA
AGCACGGCGCAGCCCTCACACCGCTcacaacttcctcctcctcctcctcc
tcctcctcctcctcctcctcctcctcctcctcctcctcctccATGCTGAC
CTTTGTCCGAAGCACTACCTCGTCTCGCACTTGCCGGTGTGCCTTCTGCT
TGGTCTTGGCGGTGacGGCCGCCCGCACCCcgtccttcacctccacgccT
GCTGCCTTCAGCTcgttttttccctcccccccccgacttCGTCTTAGGCC
ACGGCCTCTACCTCCAGTGATGgagcctcccctttcctccttcgcttcct
actcctcctcctcctcctccaccagcccttCCACGCACATCAAGCACGGC
GCAGCCCTCACACCGCTcacaacttcctcctcctcctcctcctcctcctc
ctcctcctcctcctcctcctcctcctcctcctcc
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Synonyms
Publications