rna7154, rna7154 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7154
Unique Name	rna7154
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2031
Alignment location	CM002470.1:578014..580322 -

Link to JBrowse

Properties


Property Name	Value
Product	recombinase a
Orig transcript id	gnl\|cribi\|Naga_100416g2.4406.mrna
Orig protein id	gnl\|cribi\|Naga_100416g2.4406
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:578014..580322 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100416g2	gene6916	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23537.1	cds7137	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7154	rna7154-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:578014..580322-
coding sequence from alignment at CM002470.1:578014..580322-

mRNA sequence

>rna7154 ID=rna7154|Name=rna7154|organism=Nannochloropsis gaditana|type=mRNA|length=2031bp
ATATGTAGGAATGGATGAGGCTATACTCACTCCCCACGCTCTTCCCGTCC
CTGACAGGCTTTCACATCCTTCCATCCGGCGCTGCAATCCCCTTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCTTCCGTCCCAATATGGTCCTCAAGTGC
GACCACGCCCTCCACGTATGTAAAGTCGGCCACCTCGCACGCTCCCCCGT
CTCCCTCGCCTTTTACCGGGCGGAGGGCGGGAAGGAGGGCGGGAAGGAGG
GCGGGAAGGAGGGCGGGAAGGAGGACTTGCAGGGCCTCTGGGAGCAGTCG
CGGGAAGCTGCCGTCACCCATATGGAGCATGACGCCACCCCTTCTCTGCG
CGTCGCGGGATACCCGGCAGACTTCGGCCCCGACCTTCGACTCGAGGGCC
CTCTGTTTGCTCGGCTGGCTCCCGTCTTGTCCCCTACCCCCCCTGTGCCT
CACTCAGGGGAAGGCAGTCCGTCCTACCACGCCGAACCCGAGAATACCAG
TACGGGAAAGCACCGGAACGACGGAAATCCTGCTTTCCACCGAGGCTGTC
TGCCCTTTTCGGAAGAAGAGGGGAAAGGTATGGTGGGACGTGTGGTTGTG
GTGGAGCGCGGCGGGTGTTCGTACCTGACCAAGGCCCGCCATGTGCAGGC
CGTGGGCGGGGTGGGGATGGTCGTTTTGGACCTGGCCCATGTCCCTGCTT
CCCCCGCCTCTGTTTCTGCCCCGCCGTCACCAGAGAGAGGTGGACAGGAC
CTTGGGGGTCCGAGCGGGCGGGTAGGAGGGAAAGGGGGGGGGGAGGAGGC
TGTCAAGTCCTTGTTCAAGGCGTGGGAGGTCATGGCACAGGACGGGAGCG
GGGGCGACATTACCATTCCCTCCCTCCTTTTGACCCGGGAAATGGCGCGA
AAAGTGCTCGACTCTGGGATTCTCCTCCATCCTAAGGAGGGGAGGAGGGA
AGACGACAAGGTGTGGGTGCGCCTCGGGTCCTTCAAGGCGATGGCGTTGG
AAGAGGAGAAGGAGCTTTTGGATTTGACCCCGTTGATAGGACCGGCCTCC
GGACGGAGGGAGGGAGAAAGGGCGGGAGTGAAGGAAGGAAAGCTAGCAAT
GAATTTTGAAGATCTCTTGGCTTCTGTGATGCAGGGGATGAAGGATATGC
TTGTGTCGGACGAGAAGGGCAACGGTCAGTCACCTGACGCGGAAGAAGAA
GCGGACGACGAGGAAGAGGACAGTGACGAAGAGGAGGAGGAAGAAAGCGA
CGTCGAGGAAGAGGAGGACGAGGACGAGGACGAGGAGGAGGACGAGGAGG
AGGAAGAAGAAGAAGAGGAGGATGGGGCGGAGTGGAATGATGACGATTGG
GGCGAGTGGGATATGGAGAGAGTTAGGGAGGGAGGGAGGGAGGGAAGAAG
ATAGAGAGCACACGGCAAGCTGATGCCGATCTGACTGTCCGGTGAAGGAT
TTTTAAAATTGTATCCGAGTAGGATATAGGGGAAATCTCTGAGCGTCAGG
GCTGAGTTTTGGAAGGTTTGCACAGTAGGGATAAATTTATTCTGAGCACA
CTACCAGTGCAGTCCTTTTTTGGCATAATCTATGTAGTCGCTAAAAAGTA
CACGCTTTGCCCGGCAGTAAGCCACGGGAATGTCGATGAGAAACAATAGG
TGATTCGAGAGAAGTCTGGAGTAAGGAGGAAATCGGAGACTTGCCCGCTA
AAATTTGATACAGAGGATAGTCAAGTCAGGTAAAGAGTAGAGTTCGCTGT
GTTCGAAAAACTAGAGAGGTTGCGGTGTTTTAAATACCTACTTAAGAGTC
CGTTCTTGCTTTTATCTTTCCTCCCGCTCGTTTTCCGCGAGCCTGACACC
CATCCATTCGTCCTCGTCAGAATATTTGGAAACATACTTGCTTTATTTGG
GCTCCTCAGAATCATATGGAACATATTGGTTTTAGACAGATAACTTCGTA
TAGAGCAAGACCTTTTTTAACAGTGCTGTGTCGTGGTTTCTTCTGCATAT
CCTGGACTGAGAGCTGATGAGAGCGACTATC

protein sequence of rna7154

>rna7154-protein ID=rna7154-protein|Name=rna7154|organism=Nannochloropsis gaditana|type=polypeptide|length=466bp
MIARLGEVFFRLPRPCMRLVRHQKVLEAHCALHFTVRSSLCRFNVVFATC
LVNMRSHFSTSEQTRCLASVIEGVRKEYGNRSLVRLGDMKCDQEPADVIS
TGIFALDQALGIGGLPRGHLVELCGRDDADVTAMALYMMGRAQGEGGTAV
LVNHHIALDLEHLRALKVDVENLYIGQPNTWEEALEMGTRLVASRVVDCV
VMDGTLAPYPTRRLQMTGVQKLPTAMSQWVRLNQALSRSRCLLLWLGRAH
GMPDLRDAREAREEGRTEVWASFPSLRLRCEEIDPLDRGEWSGRAGRKRG
GVSCRSSDDDHSLFRKRRGQPRYIRVGVVRNMLATPSGAVEVDLVNGTEH
DRSGATKEGERVKEQGGALAADGQAGTTMVAPLQGREDNPSISEHVDRGK
EQAEIEEPLRRASIHVPAWTSGGGGGGGDGVDLDIDYLTGEIGNAQAEAA
LTGSDAGRGKREGGTG

mRNA from alignment at CM002470.1:578014..580322-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7154 ID=rna7154|Name=rna7154|organism=Nannochloropsis gaditana|type=mRNA|length=2309bp|location=Sequence derived from alignment at CM002470.1:578014..580322- (Nannochloropsis gaditana)
CCTGTCCATCTCGACCTTTCTGGGATTTTAGGAGGGAAGTCCTATTTGTA
AGCCGCTTGGAATTGTTGAAGACTCATCTCGGGTATGATTTACCGATGGG
AGTACTTATTTCACTTATGTTTTCGTAATGAAACTCAAAGCTGACGTCAA
AGAGATCCTCTGCTCCTAGCAGGAAAAAAATGGATGCAAATAAGGTCACA
AAGACGGCTAATAGATCGACTTTTGTACGACATAGACTCAACATTGTGCC
GTCTCATCCGGGGTCTGGAAAGCCAGTATTACGCGTCATACCAGCATGGA
GCTTTGAGCTTTTGATAAGTATGAAGTTCACGCAGTGATTGCCTTGCCAG
AAAAAGGTGTCTACGCAAATGATCGCCCGGTTGGGCGAAGTGTTTTTCCG
ACTGCCGCGCCCGTGTATGCGTCTCGTCAGGCATCAGAAGGTCCTGGAGG
CCCATTGCGCCCTGCACTTTACGGTGCGGTCATCCCTTTGTCGTTTCAAC
GTGGTTTTCGCAACCTGCCTTGTAAACATGCGCTCCCATTTTTCCACCTC
GGAACAGACAAGATGTCTGGCCTCAGTTATCGAGGGCGTACGAAAAGAAT
ATGGAAATCGTTCCCTGGTCCGACTTGGAGACATGAAATGTGACCAAGAG
CCCGCCGACGTGATTTCAACAGGGATCTTTGCCCTCGATCAAGCACTAGG
TATTGGTGGGCTGCCCCGCGGGCATTTGGTAGAGCTCTGCGGCCGCGATG
ATGCGGACGTTACGGCAATGGCGCTTTACATGATGGGAAGGGCCCAGGGA
GAAGGAGGCACTGCCGTGCTTGTCAACCACCACATCGCCCTCGACCTGGA
ACATCTCCGTGCACTCAAGGTGGATGTGGAGAACCTCTATATCGGACAGC
CAAATACCTGGGAGGAAGCATTGGAGATGGGCACTCGCCTCGTCGCATCC
CGGGTGGTGGATTGCGTGGTCATGGACGGGACTTTGGCGCCTTACCCTAC
CCGGAGGTTGCAGATGACCGGCGTTCAAAAGCTTCCAACAGCCATGTCGC
AATGGGTGAGACTGAACCAGGCCCTGTCCCGATCTCGATGCCTGCTTCTG
TGGCTGGGGCGGGCCCATGGGATGCCCGACCTTCGGGACGCGAGGGAGGC
AAGGGAGGAAGGAAGGACCGAGGTATGGGCCAGCTTCCCCTCGCTTCGGT
TGCGATGCGAGGAGATCGATCCGCTGGATCGTGGAGAATGGAGTGGACGG
GCGGGACGGAAAAGGGGTGGGGTGTCTTGTCGAAGCTCGGACGACGACCA
TTCGCTGTTTCGCAAGCGCCGAGGGCAGCCCCGGTACATCCGGGTAGGCG
TGGTAAGAAACATGCTGGCGACCCCGTCTGGGGCAGTGGAGGTGGACCTC
GTGAACGGAACAGAGCATGACAGGTCAGGAGCGACGAAGGAAGGAGAGAG
GGTAAAAGAACAAGGAGGAGCACTGGCCGCGGATGGACAAGCAGGGACGA
CGATGGTTGCACCCCTGCAAGGAAGGGAGGATAATCCCTCGATCTCAGAG
CACGTCGACCGGGGAAAAGAACAGGCGGAAATCGAAGAGCCTTTGCGTCG
GGCTTCGATCCATGTGCCCGCATGGACGAGTGGGGGAGGAGGTGGAGGAG
GCGACGGCGTGGATCTAGATATCGATTATCTCACCGGCGAGATCGGCAAT
GCACAAGCAGAGGCAGCGCTGACGGGCTCCGACGCAGGAAGGGGAAAGAG
GGAAGGAGGGACGGGGTAGCGGGGCAGAAGAGGCCGGAGTGGATGCAATT
GAGAGAACAGTGAGCCACAGGAGAGCAACATGTTCTTTGCTTGGATGTAT
GGCTTGTGGGCCGAGCCCCAGTGGAGGAGGGTGCTAACGTTAACGTCTGT
GGCGTGTGACAAAGAATAATGCTCGCTCCCATCTTAAACCATGCTTGGGA
CTCGGCGCGGGATGATACTTGTTGTTACAGAGGGGAGATGGCGGCTGTGG
AAGGAAAAACAATGCTGTACCGACTTGATAACGGTTGCCTTGACCGAATG
AAGGTAGTTACGAGATTTGATAGTCGCTCTCATCAGCTCTCAGTCCAGGA
TATGCAGAAGAAACCACGACACAGCACTGTTAAAAAAGGTCTTGCTCTAT
ACGAAGTTATCTGTCTAAAACCAATATGTTCCATATGATTCTGAGGAGCC
CAAATAAAGCAAGTATGTTTCCAAATATTCTGACGAGGACGAATGGATGG
GTGTCAGGCTCGCGGAAAACGAGCGGGAGGAAAGATAAAAGCAAGAACGG
ACTCTTAAG

Coding sequence (CDS) from alignment at CM002470.1:578014..580322-

>rna7154 ID=rna7154|Name=rna7154|organism=Nannochloropsis gaditana|type=CDS|length=1401bp|location=Sequence derived from alignment at CM002470.1:578014..580322- (Nannochloropsis gaditana)
ATGATCGCCCGGTTGGGCGAAGTGTTTTTCCGACTGCCGCGCCCGTGTAT
GCGTCTCGTCAGGCATCAGAAGGTCCTGGAGGCCCATTGCGCCCTGCACT
TTACGGTGCGGTCATCCCTTTGTCGTTTCAACGTGGTTTTCGCAACCTGC
CTTGTAAACATGCGCTCCCATTTTTCCACCTCGGAACAGACAAGATGTCT
GGCCTCAGTTATCGAGGGCGTACGAAAAGAATATGGAAATCGTTCCCTGG
TCCGACTTGGAGACATGAAATGTGACCAAGAGCCCGCCGACGTGATTTCA
ACAGGGATCTTTGCCCTCGATCAAGCACTAGGTATTGGTGGGCTGCCCCG
CGGGCATTTGGTAGAGCTCTGCGGCCGCGATGATGCGGACGTTACGGCAA
TGGCGCTTTACATGATGGGAAGGGCCCAGGGAGAAGGAGGCACTGCCGTG
CTTGTCAACCACCACATCGCCCTCGACCTGGAACATCTCCGTGCACTCAA
GGTGGATGTGGAGAACCTCTATATCGGACAGCCAAATACCTGGGAGGAAG
CATTGGAGATGGGCACTCGCCTCGTCGCATCCCGGGTGGTGGATTGCGTG
GTCATGGACGGGACTTTGGCGCCTTACCCTACCCGGAGGTTGCAGATGAC
CGGCGTTCAAAAGCTTCCAACAGCCATGTCGCAATGGGTGAGACTGAACC
AGGCCCTGTCCCGATCTCGATGCCTGCTTCTGTGGCTGGGGCGGGCCCAT
GGGATGCCCGACCTTCGGGACGCGAGGGAGGCAAGGGAGGAAGGAAGGAC
CGAGGTATGGGCCAGCTTCCCCTCGCTTCGGTTGCGATGCGAGGAGATCG
ATCCGCTGGATCGTGGAGAATGGAGTGGACGGGCGGGACGGAAAAGGGGT
GGGGTGTCTTGTCGAAGCTCGGACGACGACCATTCGCTGTTTCGCAAGCG
CCGAGGGCAGCCCCGGTACATCCGGGTAGGCGTGGTAAGAAACATGCTGG
CGACCCCGTCTGGGGCAGTGGAGGTGGACCTCGTGAACGGAACAGAGCAT
GACAGGTCAGGAGCGACGAAGGAAGGAGAGAGGGTAAAAGAACAAGGAGG
AGCACTGGCCGCGGATGGACAAGCAGGGACGACGATGGTTGCACCCCTGC
AAGGAAGGGAGGATAATCCCTCGATCTCAGAGCACGTCGACCGGGGAAAA
GAACAGGCGGAAATCGAAGAGCCTTTGCGTCGGGCTTCGATCCATGTGCC
CGCATGGACGAGTGGGGGAGGAGGTGGAGGAGGCGACGGCGTGGATCTAG
ATATCGATTATCTCACCGGCGAGATCGGCAATGCACAAGCAGAGGCAGCG
CTGACGGGCTCCGACGCAGGAAGGGGAAAGAGGGAAGGAGGGACGGGGTA
G

Synonyms

Publications